Wall clock time and date at job start Tue Mar 31 2020 16:37:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50696 * 109.47313 * 2 1 4 4 C 1.38248 * 120.00062 * 269.97356 * 3 2 1 5 5 C 1.38218 * 120.00119 * 179.78854 * 4 3 2 6 6 C 1.38257 * 119.99535 * 0.47130 * 5 4 3 7 7 C 1.38210 * 120.00181 * 359.51373 * 6 5 4 8 8 C 1.50703 * 119.99932 * 180.25644 * 7 6 5 9 9 C 1.50700 * 109.47423 * 89.99583 * 8 7 6 10 10 O 1.21285 * 119.99943 * 359.97438 * 9 8 7 11 11 N 1.34772 * 120.00424 * 179.97438 * 9 8 7 12 12 C 1.46495 * 120.00581 * 180.02562 * 11 9 8 13 13 H 1.09005 * 109.46119 * 325.00068 * 12 11 9 14 14 C 1.53043 * 109.46170 * 84.96923 * 12 11 9 15 15 C 1.53159 * 109.32460 * 58.64354 * 14 12 11 16 16 N 1.46932 * 108.76993 * 54.64749 * 15 14 12 17 17 C 1.36934 * 120.63136 * 126.36103 * 16 15 14 18 18 H 1.08003 * 120.00466 * 331.84735 * 17 16 15 19 19 C 1.38813 * 119.99600 * 151.84475 * 17 16 15 20 20 N 1.31620 * 119.99986 * 343.08118 * 19 17 16 21 21 Si 1.86800 * 120.00028 * 163.08408 * 19 17 16 22 22 H 1.48501 * 109.47051 * 59.99471 * 21 19 17 23 23 H 1.48498 * 109.47285 * 179.97438 * 21 19 17 24 24 H 1.48499 * 109.46925 * 299.99907 * 21 19 17 25 25 C 1.46923 * 118.73586 * 306.39004 * 16 15 14 26 26 C 1.53042 * 109.46433 * 205.02850 * 12 11 9 27 27 H 1.08998 * 109.49543 * 181.35948 * 26 12 11 28 28 C 1.52998 * 109.49609 * 61.29124 * 26 12 11 29 29 C 1.38223 * 119.99944 * 90.00339 * 3 2 1 30 30 H 1.09003 * 109.47108 * 300.00461 * 1 2 3 31 31 H 1.09003 * 109.47004 * 59.99274 * 1 2 3 32 32 H 1.08998 * 109.47813 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.46675 * 239.99810 * 2 1 3 34 34 H 1.09002 * 109.46463 * 120.00188 * 2 1 3 35 35 H 1.07996 * 120.00338 * 0.02562 * 4 3 2 36 36 H 1.07997 * 120.00234 * 180.26141 * 5 4 3 37 37 H 1.08006 * 119.99687 * 179.78481 * 6 5 4 38 38 H 1.08998 * 109.46831 * 209.99636 * 8 7 6 39 39 H 1.09002 * 109.46931 * 329.99466 * 8 7 6 40 40 H 0.97002 * 119.99819 * 0.02562 * 11 9 8 41 41 H 1.09000 * 109.49500 * 178.60807 * 14 12 11 42 42 H 1.09000 * 109.49416 * 298.70813 * 14 12 11 43 43 H 1.08996 * 109.59782 * 294.85819 * 15 14 12 44 44 H 1.09006 * 109.70473 * 174.49903 * 15 14 12 45 45 H 0.97003 * 119.99750 * 180.02562 * 20 19 17 46 46 H 1.08999 * 109.58280 * 293.82052 * 25 16 15 47 47 H 1.08991 * 109.58721 * 173.39722 * 25 16 15 48 48 H 1.08997 * 109.47050 * 60.00306 * 28 26 12 49 49 H 1.08998 * 109.46810 * 180.02562 * 28 26 12 50 50 H 1.09004 * 109.47459 * 300.00172 * 28 26 12 51 51 H 1.07999 * 119.99765 * 359.97089 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2633 2.0723 -1.1973 5 6 2.7199 3.3769 -1.1973 6 6 2.9550 4.0269 0.0001 7 6 2.7238 3.3757 1.1970 8 6 2.9745 4.0863 2.5021 9 6 1.7187 4.7973 2.9364 10 8 0.7187 4.7337 2.2531 11 7 1.7068 5.5038 4.0840 12 6 0.4859 6.1945 4.5065 13 1 -0.0430 6.5666 3.6289 14 6 -0.4141 5.2190 5.2684 15 6 0.3441 4.6717 6.4814 16 7 0.8266 5.8019 7.2868 17 6 0.5363 5.8810 8.6226 18 1 -0.3652 5.4270 9.0072 19 6 1.4006 6.5445 9.4826 20 7 2.6342 6.8044 9.1045 21 14 0.8128 7.0686 11.1765 22 1 0.3900 5.8711 11.9462 23 1 1.9182 7.7530 11.8942 24 1 -0.3369 7.9979 11.0359 25 6 1.6260 6.8460 6.6314 26 6 0.8533 7.3689 5.4164 27 1 -0.0560 7.8686 5.7504 28 6 1.7262 8.3599 4.6438 29 6 2.2628 2.0723 1.1971 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5140 -0.8899 32 1 -0.3635 -1.0276 -0.0005 33 1 1.8932 -0.5139 -0.8900 34 1 1.8932 -0.5139 0.8900 35 1 2.0833 1.5633 -2.1326 36 1 2.8963 3.8873 -2.1325 37 1 3.3151 5.0452 0.0001 38 1 3.2618 3.3596 3.2620 39 1 3.7768 4.8126 2.3721 40 1 2.5067 5.5550 4.6303 41 1 -1.3115 5.7387 5.6044 42 1 -0.6944 4.3947 4.6127 43 1 1.1918 4.0753 6.1440 44 1 -0.3219 4.0526 7.0825 45 1 3.2383 7.2678 9.7056 46 1 2.5782 6.4268 6.3061 47 1 1.8039 7.6629 7.3306 48 1 1.1770 8.7294 3.7778 49 1 1.9879 9.1959 5.2923 50 1 2.6359 7.8601 4.3109 51 1 2.0824 1.5633 2.1323 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000942191183.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:37:52 Heat of formation + Delta-G solvation = -27.551320 kcal Electronic energy + Delta-G solvation = -28783.784360 eV Core-core repulsion = 25067.850968 eV Total energy + Delta-G solvation = -3715.933392 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.34095 -40.27272 -38.97125 -35.91149 -35.28435 -33.80622 -33.52238 -33.16006 -31.33140 -30.36333 -28.56951 -27.50789 -26.81437 -24.79376 -24.00077 -23.08128 -22.58695 -22.00807 -20.86346 -20.06880 -18.74004 -18.12416 -17.39041 -16.85967 -16.79289 -16.55377 -16.06231 -15.75290 -15.68689 -15.34695 -15.01441 -14.78281 -14.70530 -14.50279 -14.41504 -14.25884 -13.88982 -13.83822 -13.57342 -13.12142 -12.96453 -12.91316 -12.83633 -12.75377 -12.58657 -12.52674 -12.46485 -12.20679 -12.12313 -11.79465 -11.70004 -11.67726 -11.60989 -11.44804 -11.12304 -10.83977 -10.53034 -9.91494 -9.64973 -9.46420 -8.64589 -7.86783 -5.30912 0.46047 0.54187 1.47759 1.49673 1.56039 1.74458 2.32909 2.51930 2.94432 3.27927 3.67370 3.71254 3.82293 3.85473 4.01860 4.04670 4.14249 4.21096 4.25866 4.30248 4.35008 4.40457 4.51156 4.58591 4.59566 4.62834 4.69120 4.71971 4.75356 4.79549 4.87136 4.97077 5.01500 5.04443 5.06976 5.10401 5.17722 5.22960 5.25043 5.30993 5.35841 5.37765 5.52808 5.60308 5.65078 5.67936 5.70497 5.76371 5.78148 6.17621 6.40766 6.66599 7.17063 7.34582 7.86945 8.38394 9.18675 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.019614 B = 0.002648 C = 0.002502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1427.207221 B =10572.466386 C =11187.627393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.082 4.082 3 C -0.092 4.092 4 C -0.129 4.129 5 C -0.123 4.123 6 C -0.126 4.126 7 C -0.072 4.072 8 C -0.100 4.100 9 C 0.516 3.484 10 O -0.577 6.577 11 N -0.709 5.709 12 C 0.169 3.831 13 H 0.072 0.928 14 C -0.134 4.134 15 C 0.151 3.849 16 N -0.608 5.608 17 C -0.266 4.266 18 H 0.060 0.940 19 C -0.043 4.043 20 N -0.927 5.927 21 Si 0.961 3.039 22 H -0.279 1.279 23 H -0.292 1.292 24 H -0.281 1.281 25 C 0.189 3.811 26 C -0.116 4.116 27 H 0.066 0.934 28 C -0.131 4.131 29 C -0.123 4.123 30 H 0.038 0.962 31 H 0.053 0.947 32 H 0.072 0.928 33 H 0.087 0.913 34 H 0.074 0.926 35 H 0.139 0.861 36 H 0.141 0.859 37 H 0.128 0.872 38 H 0.115 0.885 39 H 0.125 0.875 40 H 0.406 0.594 41 H 0.063 0.937 42 H 0.058 0.942 43 H 0.018 0.982 44 H 0.045 0.955 45 H 0.251 0.749 46 H 0.011 0.989 47 H 0.055 0.945 48 H 0.061 0.939 49 H 0.053 0.947 50 H 0.059 0.941 51 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.200 -7.333 -19.744 21.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.119 4.119 3 C -0.092 4.092 4 C -0.146 4.146 5 C -0.141 4.141 6 C -0.144 4.144 7 C -0.072 4.072 8 C -0.140 4.140 9 C 0.303 3.697 10 O -0.457 6.457 11 N -0.361 5.361 12 C 0.064 3.936 13 H 0.090 0.910 14 C -0.174 4.174 15 C 0.026 3.974 16 N -0.331 5.331 17 C -0.396 4.396 18 H 0.078 0.922 19 C -0.239 4.239 20 N -0.573 5.573 21 Si 0.790 3.210 22 H -0.205 1.205 23 H -0.219 1.219 24 H -0.207 1.207 25 C 0.063 3.937 26 C -0.136 4.136 27 H 0.085 0.915 28 C -0.189 4.189 29 C -0.141 4.141 30 H 0.058 0.942 31 H 0.072 0.928 32 H 0.091 0.909 33 H 0.105 0.895 34 H 0.092 0.908 35 H 0.157 0.843 36 H 0.159 0.841 37 H 0.146 0.854 38 H 0.133 0.867 39 H 0.143 0.857 40 H 0.243 0.757 41 H 0.081 0.919 42 H 0.077 0.923 43 H 0.036 0.964 44 H 0.063 0.937 45 H 0.060 0.940 46 H 0.029 0.971 47 H 0.074 0.926 48 H 0.080 0.920 49 H 0.073 0.927 50 H 0.078 0.922 51 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 1.609 -7.311 -20.103 21.451 hybrid contribution 0.036 0.449 1.642 1.703 sum 1.645 -6.862 -18.461 19.763 Atomic orbital electron populations 1.21730 0.94822 1.02267 1.01440 1.20570 0.96051 0.91652 1.03660 1.20133 0.98726 0.97314 0.93004 1.21280 1.00091 0.95249 0.98018 1.21379 0.99163 0.95173 0.98411 1.21198 1.00894 1.00044 0.92247 1.19439 0.99371 0.94199 0.94213 1.20728 0.95982 1.00972 0.96274 1.20926 0.90286 0.78364 0.80099 1.90673 1.36876 1.62938 1.55209 1.46123 1.15169 1.51327 1.23443 1.20664 0.85429 0.91701 0.95823 0.90952 1.22226 0.98628 0.99270 0.97280 1.20870 0.95575 0.89538 0.91455 1.44268 1.62139 1.21539 1.05135 1.19400 1.02364 1.33274 0.84549 0.92249 1.25668 0.94777 1.02591 1.00833 1.70126 1.04502 1.45111 1.37526 0.85442 0.77026 0.78180 0.80371 1.20495 1.21851 1.20721 1.20602 0.90566 0.91326 0.91167 1.21931 1.00210 0.95189 0.96293 0.91511 1.21648 0.99525 0.98299 0.99411 1.21035 1.00013 0.94827 0.98204 0.94230 0.92800 0.90867 0.89463 0.90751 0.84312 0.84093 0.85375 0.86718 0.85690 0.75740 0.91852 0.92322 0.96401 0.93680 0.94016 0.97118 0.92612 0.92034 0.92748 0.92244 0.86501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.45 9.89 71.98 0.71 -1.73 16 2 C -0.08 -1.34 6.06 29.85 0.18 -1.16 16 3 C -0.09 -1.94 5.13 -19.87 -0.10 -2.04 16 4 C -0.13 -2.49 9.70 22.27 0.22 -2.27 16 5 C -0.12 -2.44 10.05 22.27 0.22 -2.21 16 6 C -0.13 -2.80 9.70 22.27 0.22 -2.58 16 7 C -0.07 -1.73 4.37 -19.87 -0.09 -1.82 16 8 C -0.10 -2.20 5.83 29.10 0.17 -2.03 16 9 C 0.52 15.13 7.79 87.66 0.68 15.81 16 10 O -0.58 -21.17 15.70 -3.04 -0.05 -21.22 16 11 N -0.71 -21.07 3.60 -442.41 -1.59 -22.66 16 12 C 0.17 5.62 2.21 45.02 0.10 5.72 16 13 H 0.07 2.46 7.58 -2.38 -0.02 2.44 16 14 C -0.13 -4.82 5.77 30.66 0.18 -4.64 16 15 C 0.15 6.25 6.26 86.35 0.54 6.79 16 16 N -0.61 -29.24 2.99 -699.16 -2.09 -31.33 16 17 C -0.27 -14.31 9.58 84.03 0.81 -13.50 16 18 H 0.06 3.18 7.89 -2.91 -0.02 3.16 16 19 C -0.04 -2.31 4.92 84.86 0.42 -1.89 16 20 N -0.93 -52.21 11.20 21.65 0.24 -51.96 16 21 Si 0.96 43.98 29.59 68.60 2.03 46.00 16 22 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 23 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 24 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 25 C 0.19 8.31 4.29 86.36 0.37 8.69 16 26 C -0.12 -4.05 2.67 -10.71 -0.03 -4.08 16 27 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 28 C -0.13 -3.78 9.05 71.98 0.65 -3.12 16 29 C -0.12 -2.96 9.36 22.27 0.21 -2.75 16 30 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.09 1.10 8.09 -2.39 -0.02 1.08 16 34 H 0.07 1.15 8.09 -2.39 -0.02 1.13 16 35 H 0.14 1.98 8.06 -2.91 -0.02 1.95 16 36 H 0.14 2.04 8.06 -2.91 -0.02 2.02 16 37 H 0.13 2.46 8.06 -2.91 -0.02 2.44 16 38 H 0.11 2.22 8.09 -2.39 -0.02 2.20 16 39 H 0.13 2.11 8.09 -2.39 -0.02 2.09 16 40 H 0.41 11.75 6.73 -92.71 -0.62 11.13 16 41 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 42 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 43 H 0.02 0.74 7.74 -2.39 -0.02 0.72 16 44 H 0.04 1.89 7.93 -2.38 -0.02 1.87 16 45 H 0.25 13.76 8.31 -92.71 -0.77 12.99 16 46 H 0.01 0.48 6.64 -2.39 -0.02 0.47 16 47 H 0.06 2.85 6.06 -2.39 -0.01 2.84 16 48 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 49 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 50 H 0.06 1.60 7.54 -2.38 -0.02 1.58 16 51 H 0.12 2.71 8.06 -2.91 -0.02 2.69 16 Total: -1.00 -65.27 403.15 4.27 -61.01 By element: Atomic # 1 Polarization: 28.72 SS G_CDS: 0.27 Total: 28.99 kcal Atomic # 6 Polarization: -14.29 SS G_CDS: 5.45 Total: -8.83 kcal Atomic # 7 Polarization: -102.52 SS G_CDS: -3.44 Total: -105.96 kcal Atomic # 8 Polarization: -21.17 SS G_CDS: -0.05 Total: -21.22 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.00 kcal Total: -65.27 4.27 -61.01 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942191183.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.456 kcal (2) G-P(sol) polarization free energy of solvation -65.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds