Wall clock time and date at job start Tue Mar 31 2020 16:37:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50701 * 109.46713 * 2 1 4 4 C 1.38258 * 119.99881 * 269.97442 * 3 2 1 5 5 C 1.38211 * 119.99903 * 179.97438 * 4 3 2 6 6 C 1.38261 * 120.00044 * 359.86104 * 5 4 3 7 7 C 1.38211 * 120.00040 * 0.39678 * 6 5 4 8 8 C 1.50699 * 120.00354 * 179.80712 * 7 6 5 9 9 C 1.50694 * 109.47161 * 269.72844 * 8 7 6 10 10 O 1.21285 * 120.00392 * 359.97438 * 9 8 7 11 11 N 1.34781 * 119.99785 * 180.02562 * 9 8 7 12 12 C 1.46500 * 119.99919 * 180.02562 * 11 9 8 13 13 H 1.08997 * 109.46303 * 34.96696 * 12 11 9 14 14 C 1.53045 * 109.45791 * 274.99776 * 12 11 9 15 15 C 1.53192 * 109.33739 * 178.61356 * 14 12 11 16 16 N 1.46998 * 108.74154 * 54.62332 * 15 14 12 17 17 C 1.36930 * 120.61644 * 126.38326 * 16 15 14 18 18 H 1.07998 * 120.00280 * 207.68527 * 17 16 15 19 19 C 1.38815 * 119.99720 * 27.69315 * 17 16 15 20 20 N 1.31614 * 120.00332 * 17.34405 * 19 17 16 21 21 Si 1.86808 * 119.99812 * 197.34769 * 19 17 16 22 22 H 1.48504 * 109.46698 * 59.99692 * 21 19 17 23 23 H 1.48500 * 109.47100 * 179.97438 * 21 19 17 24 24 H 1.48497 * 109.46909 * 299.99973 * 21 19 17 25 25 C 1.46925 * 118.75135 * 306.40734 * 16 15 14 26 26 C 1.53043 * 109.45142 * 154.93823 * 12 11 9 27 27 H 1.09000 * 109.49796 * 61.42384 * 26 12 11 28 28 C 1.52999 * 109.49534 * 301.32807 * 26 12 11 29 29 C 1.38209 * 120.00211 * 90.00611 * 3 2 1 30 30 H 1.09000 * 109.46914 * 299.99663 * 1 2 3 31 31 H 1.08994 * 109.47188 * 59.99909 * 1 2 3 32 32 H 1.09001 * 109.47131 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.46914 * 240.00337 * 2 1 3 34 34 H 1.08994 * 109.47188 * 120.00091 * 2 1 3 35 35 H 1.07992 * 120.00233 * 0.02562 * 4 3 2 36 36 H 1.08005 * 120.00280 * 180.02562 * 5 4 3 37 37 H 1.08006 * 119.99992 * 180.20554 * 6 5 4 38 38 H 1.09000 * 109.46926 * 149.72584 * 8 7 6 39 39 H 1.09000 * 109.46961 * 29.72890 * 8 7 6 40 40 H 0.96996 * 120.00040 * 359.97438 * 11 9 8 41 41 H 1.09004 * 109.49855 * 298.57840 * 14 12 11 42 42 H 1.09000 * 109.49888 * 58.64311 * 14 12 11 43 43 H 1.09004 * 109.58473 * 174.44160 * 15 14 12 44 44 H 1.08995 * 109.58791 * 294.86074 * 15 14 12 45 45 H 0.97007 * 120.00009 * 179.97438 * 20 19 17 46 46 H 1.09004 * 109.58839 * 293.82233 * 25 16 15 47 47 H 1.08999 * 109.70556 * 173.46389 * 25 16 15 48 48 H 1.09004 * 109.47024 * 59.99622 * 28 26 12 49 49 H 1.08999 * 109.47353 * 179.97438 * 28 26 12 50 50 H 1.08996 * 109.47424 * 300.00332 * 28 26 12 51 51 H 1.08008 * 119.99771 * 359.96850 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 6 2.2631 2.0724 -1.1974 5 6 2.7232 3.3757 -1.1974 6 6 2.9499 4.0288 0.0000 7 6 2.7242 3.3757 1.1970 8 6 2.9753 4.0861 2.5021 9 6 4.3983 3.8485 2.9376 10 8 5.1358 3.1689 2.2556 11 7 4.8511 4.3905 4.0855 12 6 6.2346 4.1601 4.5086 13 1 6.8801 4.1164 3.6315 14 6 6.3206 2.8360 5.2713 15 6 7.7741 2.5809 5.6823 16 7 8.2632 3.7447 6.4355 17 6 8.8184 3.5885 7.6774 18 1 8.7668 4.3922 8.3970 19 6 9.4478 2.3972 8.0114 20 7 9.8162 1.5597 7.0653 21 14 9.7718 1.9826 9.8039 22 1 8.4830 1.9262 10.5395 23 1 10.4499 0.6644 9.8923 24 1 10.6394 3.0275 10.4045 25 6 8.1446 5.0785 5.8308 26 6 6.6868 5.3049 5.4181 27 1 6.0572 5.3335 6.3074 28 6 6.5693 6.6318 4.6655 29 6 2.2627 2.0724 1.1969 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8899 35 1 2.0832 1.5634 -2.1326 36 1 2.9032 3.8849 -2.1327 37 1 3.3063 5.0484 0.0000 38 1 2.2940 3.7024 3.2615 39 1 2.8090 5.1554 2.3716 40 1 4.2611 4.9338 4.6311 41 1 5.6944 2.8878 6.1620 42 1 5.9757 2.0242 4.6309 43 1 7.8256 1.6908 6.3095 44 1 8.3861 2.4386 4.7917 45 1 10.2564 0.7273 7.2988 46 1 8.7868 5.1398 4.9522 47 1 8.4416 5.8377 6.5543 48 1 5.5324 6.7910 4.3695 49 1 6.8910 7.4469 5.3137 50 1 7.2002 6.6028 3.7772 51 1 2.0823 1.5634 2.1323 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000942191184.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:37:56 Heat of formation + Delta-G solvation = -14.286284 kcal Electronic energy + Delta-G solvation = -28283.782741 eV Core-core repulsion = 24568.424564 eV Total energy + Delta-G solvation = -3715.358177 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -40.15415 -39.18917 -37.56504 -34.64659 -34.40960 -32.76888 -32.36083 -31.16660 -29.97451 -29.58292 -27.66877 -25.85878 -24.86474 -24.10032 -22.55633 -21.91362 -21.01481 -20.70087 -19.97506 -19.16061 -17.01715 -16.60994 -16.54922 -15.93524 -15.85855 -15.09699 -14.77765 -14.70203 -14.03208 -13.92567 -13.81996 -13.77240 -13.51764 -13.27568 -13.25201 -12.98408 -12.80298 -12.62415 -12.25655 -12.16910 -11.93396 -11.87787 -11.47989 -11.42192 -11.29634 -11.06204 -10.97806 -10.89905 -10.78072 -10.64677 -10.32536 -10.23447 -10.00078 -9.76837 -9.76564 -9.43821 -8.83598 -8.66537 -8.64823 -8.39976 -6.67866 -5.77523 -3.20222 1.26518 1.34442 2.85836 3.35508 3.39434 3.44869 3.45681 3.80207 4.49756 4.50512 4.56902 4.72832 4.93489 5.01186 5.01694 5.11113 5.14958 5.20543 5.29704 5.32308 5.32446 5.41761 5.43274 5.50334 5.51306 5.63167 5.69055 5.69275 5.90425 5.92438 5.98868 6.00419 6.03642 6.11846 6.26511 6.28942 6.38467 6.42030 6.46158 6.49060 6.54705 6.63549 6.68506 6.79989 6.94225 6.97368 6.98139 7.38982 7.68447 7.77717 7.80005 8.45283 8.48630 9.21577 9.85192 10.41890 11.30966 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.016756 B = 0.002504 C = 0.002283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1670.681795 B =11180.604743 C =12259.955111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.086 4.086 3 C -0.082 4.082 4 C -0.121 4.121 5 C -0.117 4.117 6 C -0.111 4.111 7 C -0.058 4.058 8 C -0.105 4.105 9 C 0.510 3.490 10 O -0.530 6.530 11 N -0.725 5.725 12 C 0.158 3.842 13 H 0.080 0.920 14 C -0.147 4.147 15 C 0.174 3.826 16 N -0.593 5.593 17 C -0.255 4.255 18 H 0.065 0.935 19 C 0.003 3.997 20 N -0.901 5.901 21 Si 0.902 3.098 22 H -0.284 1.284 23 H -0.290 1.290 24 H -0.283 1.283 25 C 0.155 3.845 26 C -0.114 4.114 27 H 0.070 0.930 28 C -0.141 4.141 29 C -0.102 4.102 30 H 0.055 0.945 31 H 0.054 0.946 32 H 0.056 0.944 33 H 0.071 0.929 34 H 0.072 0.928 35 H 0.118 0.882 36 H 0.120 0.880 37 H 0.118 0.882 38 H 0.100 0.900 39 H 0.099 0.901 40 H 0.394 0.606 41 H 0.054 0.946 42 H 0.052 0.948 43 H 0.089 0.911 44 H 0.020 0.980 45 H 0.255 0.745 46 H 0.020 0.980 47 H 0.057 0.943 48 H 0.046 0.954 49 H 0.053 0.947 50 H 0.051 0.949 51 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.540 4.852 -13.281 24.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.124 4.124 3 C -0.082 4.082 4 C -0.139 4.139 5 C -0.135 4.135 6 C -0.129 4.129 7 C -0.058 4.058 8 C -0.145 4.145 9 C 0.295 3.705 10 O -0.406 6.406 11 N -0.375 5.375 12 C 0.055 3.945 13 H 0.098 0.902 14 C -0.187 4.187 15 C 0.048 3.952 16 N -0.315 5.315 17 C -0.385 4.385 18 H 0.083 0.917 19 C -0.196 4.196 20 N -0.545 5.545 21 Si 0.732 3.268 22 H -0.211 1.211 23 H -0.216 1.216 24 H -0.209 1.209 25 C 0.027 3.973 26 C -0.135 4.135 27 H 0.089 0.911 28 C -0.199 4.199 29 C -0.120 4.120 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.075 0.925 33 H 0.089 0.911 34 H 0.091 0.909 35 H 0.136 0.864 36 H 0.138 0.862 37 H 0.136 0.864 38 H 0.118 0.882 39 H 0.118 0.882 40 H 0.227 0.773 41 H 0.073 0.927 42 H 0.071 0.929 43 H 0.107 0.893 44 H 0.038 0.962 45 H 0.065 0.935 46 H 0.037 0.963 47 H 0.076 0.924 48 H 0.065 0.935 49 H 0.072 0.928 50 H 0.071 0.929 51 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -18.873 4.182 -13.745 23.719 hybrid contribution -0.034 0.023 1.191 1.192 sum -18.907 4.205 -12.553 23.081 Atomic orbital electron populations 1.21741 0.94816 1.01608 1.02090 1.20546 0.96027 0.92780 1.02998 1.19822 0.99181 0.96068 0.93096 1.20968 1.00574 0.95011 0.97344 1.21048 0.99676 0.94986 0.97794 1.20940 0.99913 0.99986 0.92021 1.19256 0.98567 0.94357 0.93662 1.20710 0.95320 1.02228 0.96198 1.20416 0.89113 0.79921 0.81054 1.90743 1.57965 1.38040 1.53890 1.46303 1.14551 1.53122 1.23533 1.21028 0.80762 0.95496 0.97256 0.90158 1.22566 1.01874 0.95625 0.98646 1.20770 0.87376 0.91982 0.95118 1.44108 1.69338 1.00544 1.17491 1.19125 1.29704 1.00818 0.88811 0.91693 1.25049 0.97889 0.99216 0.97457 1.70030 1.42008 1.11756 1.30721 0.86375 0.77902 0.77441 0.85071 1.21072 1.21633 1.20877 1.20885 0.90959 0.89167 0.96239 1.21965 1.01032 0.93002 0.97546 0.91119 1.21765 1.00737 0.97179 1.00231 1.20840 0.99601 0.93932 0.97620 0.92569 0.92676 0.92471 0.91078 0.90928 0.86420 0.86220 0.86399 0.88207 0.88248 0.77293 0.92744 0.92884 0.89261 0.96204 0.93521 0.96261 0.92430 0.93483 0.92794 0.92949 0.86366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 9.89 37.16 0.37 -0.69 16 2 C -0.09 -0.76 6.06 -27.88 -0.17 -0.93 16 3 C -0.08 -0.89 5.13 -104.62 -0.54 -1.43 16 4 C -0.12 -1.26 9.70 -39.58 -0.38 -1.64 16 5 C -0.12 -1.23 10.05 -39.58 -0.40 -1.63 16 6 C -0.11 -1.25 9.70 -39.58 -0.38 -1.64 16 7 C -0.06 -0.69 4.37 -104.62 -0.46 -1.14 16 8 C -0.10 -1.06 5.83 -29.04 -0.17 -1.23 16 9 C 0.51 7.34 7.79 -10.99 -0.09 7.25 16 10 O -0.53 -10.18 15.70 5.55 0.09 -10.09 16 11 N -0.72 -9.83 4.36 -53.76 -0.23 -10.06 16 12 C 0.16 2.74 1.88 -67.88 -0.13 2.61 16 13 H 0.08 1.60 7.58 -51.93 -0.39 1.21 16 14 C -0.15 -2.95 5.65 -26.61 -0.15 -3.10 16 15 C 0.17 4.27 5.31 -3.67 -0.02 4.25 16 16 N -0.59 -14.84 3.00 -172.26 -0.52 -15.36 16 17 C -0.26 -6.97 9.59 -15.06 -0.14 -7.12 16 18 H 0.07 1.73 7.89 -52.49 -0.41 1.31 16 19 C 0.00 0.08 4.91 -17.43 -0.09 -0.01 16 20 N -0.90 -26.47 11.19 55.49 0.62 -25.85 16 21 Si 0.90 21.71 29.59 -169.99 -5.03 16.68 16 22 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 23 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 24 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 25 C 0.15 3.19 5.80 -3.71 -0.02 3.17 16 26 C -0.11 -1.88 2.46 -90.50 -0.22 -2.10 16 27 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 28 C -0.14 -1.86 9.03 37.16 0.34 -1.52 16 29 C -0.10 -1.20 9.36 -39.58 -0.37 -1.57 16 30 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 32 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.07 0.57 8.09 -51.93 -0.42 0.15 16 34 H 0.07 0.65 8.08 -51.93 -0.42 0.23 16 35 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 36 H 0.12 0.99 8.06 -52.48 -0.42 0.57 16 37 H 0.12 1.16 8.06 -52.48 -0.42 0.73 16 38 H 0.10 0.81 8.09 -51.93 -0.42 0.39 16 39 H 0.10 0.76 8.08 -51.93 -0.42 0.34 16 40 H 0.39 4.12 8.31 -40.82 -0.34 3.79 16 41 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 42 H 0.05 1.09 8.14 -51.93 -0.42 0.66 16 43 H 0.09 2.45 6.04 -51.93 -0.31 2.13 16 44 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 46 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 47 H 0.06 1.15 7.94 -51.93 -0.41 0.74 16 48 H 0.05 0.52 7.36 -51.93 -0.38 0.14 16 49 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 50 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 51 H 0.12 1.28 8.06 -52.48 -0.42 0.86 16 LS Contribution 407.07 15.07 6.13 6.13 Total: -1.00 -32.74 407.07 -10.95 -43.68 By element: Atomic # 1 Polarization: 12.32 SS G_CDS: -8.99 Total: 3.33 kcal Atomic # 6 Polarization: -5.45 SS G_CDS: -3.02 Total: -8.47 kcal Atomic # 7 Polarization: -51.14 SS G_CDS: -0.13 Total: -51.27 kcal Atomic # 8 Polarization: -10.18 SS G_CDS: 0.09 Total: -10.09 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.03 Total: 16.68 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -32.74 -10.95 -43.68 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942191184.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.398 kcal (2) G-P(sol) polarization free energy of solvation -32.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds