Wall clock time and date at job start Tue Mar 31 2020 16:37:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50701 * 109.46713 * 2 1 4 4 C 1.38258 * 119.99881 * 269.97442 * 3 2 1 5 5 C 1.38211 * 119.99903 * 179.97438 * 4 3 2 6 6 C 1.38261 * 120.00044 * 359.86104 * 5 4 3 7 7 C 1.38211 * 120.00040 * 0.39678 * 6 5 4 8 8 C 1.50699 * 120.00354 * 179.80712 * 7 6 5 9 9 C 1.50694 * 109.47161 * 269.72844 * 8 7 6 10 10 O 1.21285 * 120.00392 * 359.97438 * 9 8 7 11 11 N 1.34781 * 119.99785 * 180.02562 * 9 8 7 12 12 C 1.46500 * 119.99919 * 180.02562 * 11 9 8 13 13 H 1.08997 * 109.46303 * 34.96696 * 12 11 9 14 14 C 1.53045 * 109.45791 * 274.99776 * 12 11 9 15 15 C 1.53192 * 109.33739 * 178.61356 * 14 12 11 16 16 N 1.46998 * 108.74154 * 54.62332 * 15 14 12 17 17 C 1.36930 * 120.61644 * 126.38326 * 16 15 14 18 18 H 1.07998 * 120.00280 * 207.68527 * 17 16 15 19 19 C 1.38815 * 119.99720 * 27.69315 * 17 16 15 20 20 N 1.31614 * 120.00332 * 17.34405 * 19 17 16 21 21 Si 1.86808 * 119.99812 * 197.34769 * 19 17 16 22 22 H 1.48504 * 109.46698 * 59.99692 * 21 19 17 23 23 H 1.48500 * 109.47100 * 179.97438 * 21 19 17 24 24 H 1.48497 * 109.46909 * 299.99973 * 21 19 17 25 25 C 1.46925 * 118.75135 * 306.40734 * 16 15 14 26 26 C 1.53043 * 109.45142 * 154.93823 * 12 11 9 27 27 H 1.09000 * 109.49796 * 61.42384 * 26 12 11 28 28 C 1.52999 * 109.49534 * 301.32807 * 26 12 11 29 29 C 1.38209 * 120.00211 * 90.00611 * 3 2 1 30 30 H 1.09000 * 109.46914 * 299.99663 * 1 2 3 31 31 H 1.08994 * 109.47188 * 59.99909 * 1 2 3 32 32 H 1.09001 * 109.47131 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.46914 * 240.00337 * 2 1 3 34 34 H 1.08994 * 109.47188 * 120.00091 * 2 1 3 35 35 H 1.07992 * 120.00233 * 0.02562 * 4 3 2 36 36 H 1.08005 * 120.00280 * 180.02562 * 5 4 3 37 37 H 1.08006 * 119.99992 * 180.20554 * 6 5 4 38 38 H 1.09000 * 109.46926 * 149.72584 * 8 7 6 39 39 H 1.09000 * 109.46961 * 29.72890 * 8 7 6 40 40 H 0.96996 * 120.00040 * 359.97438 * 11 9 8 41 41 H 1.09004 * 109.49855 * 298.57840 * 14 12 11 42 42 H 1.09000 * 109.49888 * 58.64311 * 14 12 11 43 43 H 1.09004 * 109.58473 * 174.44160 * 15 14 12 44 44 H 1.08995 * 109.58791 * 294.86074 * 15 14 12 45 45 H 0.97007 * 120.00009 * 179.97438 * 20 19 17 46 46 H 1.09004 * 109.58839 * 293.82233 * 25 16 15 47 47 H 1.08999 * 109.70556 * 173.46389 * 25 16 15 48 48 H 1.09004 * 109.47024 * 59.99622 * 28 26 12 49 49 H 1.08999 * 109.47353 * 179.97438 * 28 26 12 50 50 H 1.08996 * 109.47424 * 300.00332 * 28 26 12 51 51 H 1.08008 * 119.99771 * 359.96850 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 6 2.2631 2.0724 -1.1974 5 6 2.7232 3.3757 -1.1974 6 6 2.9499 4.0288 0.0000 7 6 2.7242 3.3757 1.1970 8 6 2.9753 4.0861 2.5021 9 6 4.3983 3.8485 2.9376 10 8 5.1358 3.1689 2.2556 11 7 4.8511 4.3905 4.0855 12 6 6.2346 4.1601 4.5086 13 1 6.8801 4.1164 3.6315 14 6 6.3206 2.8360 5.2713 15 6 7.7741 2.5809 5.6823 16 7 8.2632 3.7447 6.4355 17 6 8.8184 3.5885 7.6774 18 1 8.7668 4.3922 8.3970 19 6 9.4478 2.3972 8.0114 20 7 9.8162 1.5597 7.0653 21 14 9.7718 1.9826 9.8039 22 1 8.4830 1.9262 10.5395 23 1 10.4499 0.6644 9.8923 24 1 10.6394 3.0275 10.4045 25 6 8.1446 5.0785 5.8308 26 6 6.6868 5.3049 5.4181 27 1 6.0572 5.3335 6.3074 28 6 6.5693 6.6318 4.6655 29 6 2.2627 2.0724 1.1969 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8899 35 1 2.0832 1.5634 -2.1326 36 1 2.9032 3.8849 -2.1327 37 1 3.3063 5.0484 0.0000 38 1 2.2940 3.7024 3.2615 39 1 2.8090 5.1554 2.3716 40 1 4.2611 4.9338 4.6311 41 1 5.6944 2.8878 6.1620 42 1 5.9757 2.0242 4.6309 43 1 7.8256 1.6908 6.3095 44 1 8.3861 2.4386 4.7917 45 1 10.2564 0.7273 7.2988 46 1 8.7868 5.1398 4.9522 47 1 8.4416 5.8377 6.5543 48 1 5.5324 6.7910 4.3695 49 1 6.8910 7.4469 5.3137 50 1 7.2002 6.6028 3.7772 51 1 2.0823 1.5634 2.1323 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000942191184.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:37:55 Heat of formation + Delta-G solvation = -32.167289 kcal Electronic energy + Delta-G solvation = -28284.558120 eV Core-core repulsion = 24568.424564 eV Total energy + Delta-G solvation = -3716.133555 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.25671 -40.21647 -39.04314 -36.18072 -35.30234 -34.19984 -33.31523 -32.92459 -31.61599 -30.37074 -28.66030 -27.41955 -26.58571 -24.79295 -24.03387 -22.92185 -22.64825 -21.74441 -21.20872 -20.51895 -18.76170 -17.91236 -17.51842 -17.13702 -16.76163 -16.70386 -15.92215 -15.80876 -15.61568 -15.44155 -15.03340 -14.68189 -14.60494 -14.58901 -14.46716 -14.24900 -13.96076 -13.75866 -13.59247 -13.10419 -13.02310 -12.92376 -12.80995 -12.72503 -12.59304 -12.56836 -12.33305 -12.13516 -12.08316 -12.04046 -11.69823 -11.66799 -11.62334 -11.56736 -11.27493 -10.83253 -10.56944 -9.94125 -9.66125 -9.47439 -8.73062 -7.88508 -5.34864 0.44531 0.53114 1.46631 1.49476 1.56335 1.73766 2.26970 2.50661 2.92903 3.27036 3.61636 3.69662 3.76568 3.83937 4.00187 4.03515 4.12640 4.17661 4.24654 4.30081 4.38157 4.41379 4.50733 4.58971 4.60006 4.63037 4.70616 4.72420 4.76161 4.80179 4.85663 4.91366 5.01560 5.03221 5.08661 5.11132 5.16018 5.21586 5.24540 5.30401 5.37922 5.38418 5.51330 5.59024 5.60539 5.62907 5.68027 5.68701 5.74874 6.16573 6.36384 6.68707 7.11356 7.39201 7.82463 8.35642 9.18407 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.016756 B = 0.002504 C = 0.002283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1670.681795 B =11180.604743 C =12259.955111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.087 4.087 3 C -0.093 4.093 4 C -0.131 4.131 5 C -0.126 4.126 6 C -0.126 4.126 7 C -0.075 4.075 8 C -0.093 4.093 9 C 0.509 3.491 10 O -0.584 6.584 11 N -0.709 5.709 12 C 0.171 3.829 13 H 0.050 0.950 14 C -0.131 4.131 15 C 0.183 3.817 16 N -0.609 5.609 17 C -0.263 4.263 18 H 0.074 0.926 19 C -0.055 4.055 20 N -0.939 5.939 21 Si 0.970 3.030 22 H -0.276 1.276 23 H -0.297 1.297 24 H -0.272 1.272 25 C 0.148 3.852 26 C -0.099 4.099 27 H 0.081 0.919 28 C -0.133 4.133 29 C -0.123 4.123 30 H 0.052 0.948 31 H 0.058 0.942 32 H 0.068 0.932 33 H 0.077 0.923 34 H 0.066 0.934 35 H 0.136 0.864 36 H 0.140 0.860 37 H 0.131 0.869 38 H 0.125 0.875 39 H 0.133 0.867 40 H 0.415 0.585 41 H 0.062 0.938 42 H 0.043 0.957 43 H 0.055 0.945 44 H -0.015 1.015 45 H 0.249 0.751 46 H 0.006 0.994 47 H 0.065 0.935 48 H 0.075 0.925 49 H 0.069 0.931 50 H 0.043 0.957 51 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.037 6.937 -12.946 26.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.124 4.124 3 C -0.093 4.093 4 C -0.149 4.149 5 C -0.143 4.143 6 C -0.144 4.144 7 C -0.076 4.076 8 C -0.132 4.132 9 C 0.297 3.703 10 O -0.463 6.463 11 N -0.361 5.361 12 C 0.066 3.934 13 H 0.069 0.931 14 C -0.171 4.171 15 C 0.057 3.943 16 N -0.332 5.332 17 C -0.393 4.393 18 H 0.092 0.908 19 C -0.250 4.250 20 N -0.585 5.585 21 Si 0.798 3.202 22 H -0.202 1.202 23 H -0.224 1.224 24 H -0.198 1.198 25 C 0.022 3.978 26 C -0.120 4.120 27 H 0.099 0.901 28 C -0.191 4.191 29 C -0.141 4.141 30 H 0.071 0.929 31 H 0.077 0.923 32 H 0.087 0.913 33 H 0.096 0.904 34 H 0.085 0.915 35 H 0.154 0.846 36 H 0.158 0.842 37 H 0.149 0.851 38 H 0.143 0.857 39 H 0.151 0.849 40 H 0.252 0.748 41 H 0.081 0.919 42 H 0.062 0.938 43 H 0.074 0.926 44 H 0.003 0.997 45 H 0.058 0.942 46 H 0.024 0.976 47 H 0.084 0.916 48 H 0.094 0.906 49 H 0.088 0.912 50 H 0.062 0.938 51 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -21.423 6.331 -13.395 26.047 hybrid contribution 0.779 -0.628 1.007 1.419 sum -20.644 5.703 -12.388 24.742 Atomic orbital electron populations 1.21702 0.93561 1.02394 1.02093 1.20585 0.97098 0.91692 1.03032 1.20130 0.99007 0.97006 0.93179 1.21271 1.00318 0.95274 0.97999 1.21387 0.99142 0.95215 0.98591 1.21229 1.00097 1.00826 0.92250 1.19518 0.98814 0.94611 0.94627 1.20731 0.92156 1.04328 0.96014 1.21200 0.90432 0.78454 0.80247 1.90734 1.59767 1.40340 1.55461 1.46004 1.13105 1.53203 1.23760 1.20579 0.82696 0.94332 0.95814 0.93134 1.22311 0.98453 0.97299 0.99060 1.20467 0.89735 0.91187 0.92940 1.44358 1.69500 1.02067 1.17303 1.19535 1.28823 1.00984 0.89911 0.90830 1.25886 0.98317 0.99351 1.01445 1.70213 1.43477 1.12050 1.32793 0.85298 0.77941 0.76804 0.80156 1.20167 1.22379 1.19790 1.21096 0.93864 0.87142 0.95674 1.21754 0.97757 0.94401 0.98069 0.90051 1.21710 1.02556 0.95191 0.99629 1.21055 1.00462 0.94440 0.98126 0.92873 0.92335 0.91287 0.90398 0.91536 0.84616 0.84236 0.85118 0.85677 0.84858 0.74776 0.91923 0.93841 0.92638 0.99718 0.94172 0.97578 0.91624 0.90567 0.91217 0.93824 0.86244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.87 9.89 71.98 0.71 -1.16 16 2 C -0.09 -1.47 6.06 29.85 0.18 -1.29 16 3 C -0.09 -1.98 5.13 -19.87 -0.10 -2.08 16 4 C -0.13 -2.59 9.70 22.27 0.22 -2.37 16 5 C -0.13 -2.48 10.05 22.27 0.22 -2.26 16 6 C -0.13 -2.67 9.70 22.27 0.22 -2.46 16 7 C -0.08 -1.67 4.37 -19.87 -0.09 -1.76 16 8 C -0.09 -1.62 5.83 29.10 0.17 -1.45 16 9 C 0.51 13.82 7.79 87.65 0.68 14.50 16 10 O -0.58 -22.52 15.70 -3.04 -0.05 -22.57 16 11 N -0.71 -17.55 4.36 -442.39 -1.93 -19.48 16 12 C 0.17 5.81 1.88 45.02 0.08 5.90 16 13 H 0.05 2.06 7.58 -2.39 -0.02 2.04 16 14 C -0.13 -5.36 5.65 30.67 0.17 -5.19 16 15 C 0.18 9.47 5.31 86.35 0.46 9.93 16 16 N -0.61 -31.15 3.00 -698.92 -2.09 -33.24 16 17 C -0.26 -14.48 9.59 84.04 0.81 -13.68 16 18 H 0.07 3.86 7.89 -2.91 -0.02 3.84 16 19 C -0.05 -3.12 4.91 84.86 0.42 -2.70 16 20 N -0.94 -57.48 11.19 21.65 0.24 -57.24 16 21 Si 0.97 45.19 29.59 68.60 2.03 47.22 16 22 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 23 H -0.30 -14.06 7.11 99.48 0.71 -13.36 16 24 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 25 C 0.15 6.07 5.80 86.36 0.50 6.57 16 26 C -0.10 -3.07 2.46 -10.72 -0.03 -3.09 16 27 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 28 C -0.13 -3.06 9.03 71.98 0.65 -2.41 16 29 C -0.12 -2.83 9.36 22.27 0.21 -2.62 16 30 H 0.05 0.73 8.14 -2.39 -0.02 0.72 16 31 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 33 H 0.08 1.18 8.09 -2.39 -0.02 1.16 16 34 H 0.07 1.18 8.08 -2.39 -0.02 1.16 16 35 H 0.14 2.06 8.06 -2.91 -0.02 2.04 16 36 H 0.14 2.06 8.06 -2.91 -0.02 2.04 16 37 H 0.13 2.30 8.06 -2.91 -0.02 2.28 16 38 H 0.13 1.58 8.09 -2.39 -0.02 1.56 16 39 H 0.13 1.45 8.08 -2.39 -0.02 1.43 16 40 H 0.42 6.97 8.31 -92.71 -0.77 6.20 16 41 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 42 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 43 H 0.06 3.22 6.04 -2.38 -0.01 3.20 16 44 H -0.02 -0.87 8.14 -2.39 -0.02 -0.89 16 45 H 0.25 14.82 8.31 -92.70 -0.77 14.05 16 46 H 0.01 0.27 8.14 -2.38 -0.02 0.25 16 47 H 0.07 2.55 7.94 -2.39 -0.02 2.53 16 48 H 0.08 1.34 7.36 -2.39 -0.02 1.32 16 49 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 50 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 51 H 0.12 2.57 8.06 -2.91 -0.02 2.54 16 Total: -1.00 -75.12 407.07 3.81 -71.31 By element: Atomic # 1 Polarization: 21.49 SS G_CDS: 0.12 Total: 21.61 kcal Atomic # 6 Polarization: -13.09 SS G_CDS: 5.48 Total: -7.61 kcal Atomic # 7 Polarization: -106.17 SS G_CDS: -3.78 Total: -109.96 kcal Atomic # 8 Polarization: -22.52 SS G_CDS: -0.05 Total: -22.57 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 2.03 Total: 47.22 kcal Total: -75.12 3.81 -71.31 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942191184.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.143 kcal (2) G-P(sol) polarization free energy of solvation -75.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.310 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds