Wall clock time and date at job start Tue Mar 31 2020 16:37:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50698 * 109.46835 * 2 1 4 4 C 1.38256 * 119.99940 * 269.97407 * 3 2 1 5 5 C 1.38213 * 119.99975 * 179.97438 * 4 3 2 6 6 C 1.38258 * 119.99904 * 359.79342 * 5 4 3 7 7 C 1.38211 * 119.99860 * 0.48002 * 6 5 4 8 8 C 1.50710 * 119.99884 * 179.76922 * 7 6 5 9 9 C 1.50702 * 109.46655 * 269.73006 * 8 7 6 10 10 O 1.21284 * 120.00344 * 359.97438 * 9 8 7 11 11 N 1.34777 * 119.99689 * 180.02562 * 9 8 7 12 12 C 1.46497 * 120.00003 * 180.02562 * 11 9 8 13 13 H 1.08997 * 109.46387 * 35.02185 * 12 11 9 14 14 C 1.53039 * 109.44612 * 275.05419 * 12 11 9 15 15 C 1.53189 * 109.31545 * 301.35338 * 14 12 11 16 16 N 1.46927 * 108.77733 * 305.36270 * 15 14 12 17 17 C 1.36936 * 120.63241 * 233.58639 * 16 15 14 18 18 H 1.08007 * 119.99801 * 151.83235 * 17 16 15 19 19 C 1.38813 * 120.00005 * 331.83410 * 17 16 15 20 20 N 1.31615 * 119.99942 * 343.07472 * 19 17 16 21 21 Si 1.86799 * 119.99873 * 163.07730 * 19 17 16 22 22 H 1.48507 * 109.47204 * 359.97438 * 21 19 17 23 23 H 1.48496 * 109.47370 * 119.99983 * 21 19 17 24 24 H 1.48501 * 109.46966 * 239.99949 * 21 19 17 25 25 C 1.46931 * 118.73334 * 53.60640 * 16 15 14 26 26 C 1.53041 * 109.46166 * 154.99806 * 12 11 9 27 27 H 1.09003 * 109.50192 * 178.58930 * 26 12 11 28 28 C 1.52998 * 109.49557 * 298.68613 * 26 12 11 29 29 C 1.38211 * 120.00009 * 90.00287 * 3 2 1 30 30 H 1.08997 * 109.47506 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47507 * 300.00434 * 1 2 3 32 32 H 1.09007 * 109.47110 * 59.99785 * 1 2 3 33 33 H 1.08995 * 109.47183 * 239.99953 * 2 1 3 34 34 H 1.08999 * 109.46854 * 119.99952 * 2 1 3 35 35 H 1.08001 * 120.00248 * 0.02562 * 4 3 2 36 36 H 1.08008 * 119.99891 * 180.02562 * 5 4 3 37 37 H 1.07997 * 119.99965 * 180.25660 * 6 5 4 38 38 H 1.08998 * 109.46886 * 149.73134 * 8 7 6 39 39 H 1.08998 * 109.46924 * 29.72641 * 8 7 6 40 40 H 0.97006 * 120.00114 * 359.97438 * 11 9 8 41 41 H 1.08999 * 109.50013 * 181.40096 * 14 12 11 42 42 H 1.09003 * 109.49846 * 61.30620 * 14 12 11 43 43 H 1.09004 * 109.58810 * 185.57510 * 15 14 12 44 44 H 1.09003 * 109.58627 * 65.15012 * 15 14 12 45 45 H 0.96999 * 119.99981 * 179.97438 * 20 19 17 46 46 H 1.09004 * 109.58647 * 66.18352 * 25 16 15 47 47 H 1.09004 * 109.58046 * 186.46145 * 25 16 15 48 48 H 1.09005 * 109.47493 * 179.83666 * 28 26 12 49 49 H 1.08997 * 109.47369 * 299.83807 * 28 26 12 50 50 H 1.09001 * 109.47547 * 59.84100 * 28 26 12 51 51 H 1.08000 * 120.00089 * 359.97086 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2632 2.0724 -1.1973 5 6 2.7233 3.3757 -1.1974 6 6 2.9486 4.0292 0.0000 7 6 2.7232 3.3760 1.1969 8 6 2.9737 4.0866 2.5021 9 6 4.3969 3.8500 2.9377 10 8 5.1349 3.1708 2.2557 11 7 4.8493 4.3923 4.0856 12 6 6.2329 4.1628 4.5087 13 1 6.8787 4.1205 3.6317 14 6 6.3197 2.8382 5.2702 15 6 5.3848 2.8885 6.4827 16 7 5.7188 4.0707 7.2887 17 6 5.9923 3.9496 8.6250 18 1 6.6483 4.6585 9.1083 19 6 5.4264 2.9157 9.3583 20 7 4.3895 2.2608 8.8806 21 14 6.1367 2.4539 11.0231 22 1 7.2917 3.3354 11.3304 23 1 5.0953 2.6192 12.0687 24 1 6.5883 1.0395 10.9935 25 6 5.7533 5.3854 6.6335 26 6 6.6841 5.3071 5.4194 27 1 7.7050 5.1243 5.7548 28 6 6.6282 6.6267 4.6471 29 6 2.2626 2.0723 1.1969 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3634 0.5139 -0.8900 33 1 1.8933 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 2.0832 1.5633 -2.1327 36 1 2.9033 3.8848 -2.1327 37 1 3.3042 5.0490 0.0000 38 1 2.2927 3.7025 3.2615 39 1 2.8067 5.1558 2.3715 40 1 4.2589 4.9353 4.6312 41 1 7.3440 2.6785 5.6070 42 1 6.0206 2.0209 4.6139 43 1 5.5160 1.9881 7.0830 44 1 4.3509 2.9571 6.1443 45 1 3.9944 1.5381 9.3929 46 1 4.7494 5.6577 6.3075 47 1 6.1252 6.1331 7.3342 48 1 6.9468 7.4418 5.2969 49 1 7.2905 6.5705 3.7833 50 1 5.6073 6.8080 4.3109 51 1 2.0823 1.5634 2.1323 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000942191185.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:37:58 Heat of formation + Delta-G solvation = -28.172510 kcal Electronic energy + Delta-G solvation = -28746.131106 eV Core-core repulsion = 25030.170777 eV Total energy + Delta-G solvation = -3715.960329 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.34752 -40.28239 -38.97977 -35.97806 -35.29889 -33.98524 -33.29026 -32.86918 -31.71241 -30.37283 -28.59643 -27.38730 -26.79582 -24.79376 -23.94520 -23.09795 -22.71788 -22.01873 -20.88289 -20.06013 -18.70798 -18.13287 -17.39380 -16.90405 -16.76948 -16.57875 -16.04534 -15.76941 -15.69502 -15.40313 -15.05596 -14.73581 -14.66128 -14.59232 -14.43632 -14.22927 -13.96104 -13.74861 -13.51702 -13.17544 -13.01029 -12.92439 -12.81048 -12.70405 -12.59261 -12.53760 -12.36942 -12.16999 -12.12273 -11.94564 -11.70330 -11.64970 -11.62181 -11.45652 -11.10683 -10.85323 -10.53692 -9.92993 -9.66017 -9.46949 -8.65601 -7.86933 -5.31854 0.45329 0.53320 1.44985 1.48184 1.57400 1.73857 2.33016 2.51049 2.93903 3.28406 3.66963 3.70420 3.79779 3.83815 4.00518 4.08172 4.11347 4.15810 4.24655 4.29513 4.39950 4.42411 4.50309 4.58928 4.61076 4.62108 4.68012 4.70884 4.78484 4.80191 4.83769 4.98834 5.02367 5.03383 5.08124 5.12229 5.20448 5.21989 5.24265 5.32240 5.37582 5.43992 5.52641 5.59444 5.62638 5.67024 5.69474 5.74792 5.75731 6.16863 6.39259 6.66296 7.15213 7.35148 7.86858 8.37944 9.18770 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.014475 B = 0.002913 C = 0.002533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1933.915144 B = 9608.143562 C =11050.573075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.086 4.086 3 C -0.092 4.092 4 C -0.128 4.128 5 C -0.122 4.122 6 C -0.124 4.124 7 C -0.072 4.072 8 C -0.099 4.099 9 C 0.514 3.486 10 O -0.579 6.579 11 N -0.707 5.707 12 C 0.169 3.831 13 H 0.072 0.928 14 C -0.143 4.143 15 C 0.190 3.810 16 N -0.608 5.608 17 C -0.259 4.259 18 H 0.068 0.932 19 C -0.049 4.049 20 N -0.932 5.932 21 Si 0.962 3.038 22 H -0.266 1.266 23 H -0.292 1.292 24 H -0.295 1.295 25 C 0.150 3.850 26 C -0.106 4.106 27 H 0.073 0.927 28 C -0.132 4.132 29 C -0.126 4.126 30 H 0.069 0.931 31 H 0.047 0.953 32 H 0.060 0.940 33 H 0.082 0.918 34 H 0.063 0.937 35 H 0.140 0.860 36 H 0.144 0.856 37 H 0.133 0.867 38 H 0.110 0.890 39 H 0.131 0.869 40 H 0.407 0.593 41 H 0.057 0.943 42 H 0.043 0.957 43 H 0.044 0.956 44 H 0.004 0.996 45 H 0.248 0.752 46 H 0.026 0.974 47 H 0.058 0.942 48 H 0.067 0.933 49 H 0.058 0.942 50 H 0.061 0.939 51 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.529 4.895 -19.341 20.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.124 4.124 3 C -0.092 4.092 4 C -0.146 4.146 5 C -0.140 4.140 6 C -0.142 4.142 7 C -0.072 4.072 8 C -0.139 4.139 9 C 0.302 3.698 10 O -0.459 6.459 11 N -0.359 5.359 12 C 0.064 3.936 13 H 0.090 0.910 14 C -0.183 4.183 15 C 0.064 3.936 16 N -0.331 5.331 17 C -0.389 4.389 18 H 0.085 0.915 19 C -0.245 4.245 20 N -0.578 5.578 21 Si 0.791 3.209 22 H -0.191 1.191 23 H -0.219 1.219 24 H -0.222 1.222 25 C 0.024 3.976 26 C -0.127 4.127 27 H 0.091 0.909 28 C -0.190 4.190 29 C -0.144 4.144 30 H 0.088 0.912 31 H 0.067 0.933 32 H 0.079 0.921 33 H 0.101 0.899 34 H 0.082 0.918 35 H 0.157 0.843 36 H 0.162 0.838 37 H 0.150 0.850 38 H 0.128 0.872 39 H 0.149 0.851 40 H 0.244 0.756 41 H 0.076 0.924 42 H 0.062 0.938 43 H 0.062 0.938 44 H 0.022 0.978 45 H 0.057 0.943 46 H 0.044 0.956 47 H 0.076 0.924 48 H 0.086 0.914 49 H 0.077 0.923 50 H 0.080 0.920 51 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -5.081 4.318 -19.714 20.811 hybrid contribution 0.070 -0.586 1.611 1.715 sum -5.011 3.732 -18.103 19.151 Atomic orbital electron populations 1.21710 0.93747 1.02399 1.02000 1.20582 0.96969 0.91735 1.03064 1.20109 0.98974 0.97014 0.93073 1.21278 1.00190 0.95294 0.97856 1.21399 0.98958 0.95112 0.98518 1.21205 1.00135 1.00790 0.92031 1.19448 0.98893 0.94479 0.94408 1.20729 0.92790 1.04215 0.96127 1.20962 0.90138 0.78481 0.80252 1.90673 1.59447 1.40251 1.55556 1.46056 1.13679 1.52870 1.23292 1.20667 0.82877 0.94143 0.95864 0.91020 1.22393 1.00623 0.97476 0.97857 1.20370 0.93243 0.90631 0.89307 1.44273 1.81561 1.02051 1.05179 1.19521 1.21129 1.12498 0.85765 0.91468 1.25739 0.96463 1.01235 1.01061 1.70175 1.22584 1.25154 1.39874 0.85291 0.78002 0.77491 0.80161 1.19055 1.21911 1.22189 1.21091 0.96176 0.87223 0.93095 1.21785 1.00280 0.94974 0.95615 0.90868 1.21684 1.02360 0.95298 0.99651 1.21028 1.00736 0.94603 0.98064 0.91223 0.93339 0.92091 0.89924 0.91822 0.84255 0.83818 0.84952 0.87170 0.85095 0.75639 0.92425 0.93790 0.93761 0.97826 0.94315 0.95637 0.92372 0.91423 0.92330 0.91977 0.87094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.21 9.89 71.98 0.71 -1.50 16 2 C -0.09 -1.61 6.06 29.85 0.18 -1.43 16 3 C -0.09 -2.11 5.13 -19.87 -0.10 -2.21 16 4 C -0.13 -2.61 9.70 22.27 0.22 -2.39 16 5 C -0.12 -2.45 10.05 22.27 0.22 -2.23 16 6 C -0.12 -2.78 9.70 22.27 0.22 -2.56 16 7 C -0.07 -1.81 4.37 -19.86 -0.09 -1.90 16 8 C -0.10 -2.27 5.83 29.11 0.17 -2.10 16 9 C 0.51 15.70 7.79 87.66 0.68 16.39 16 10 O -0.58 -22.32 15.70 -3.04 -0.05 -22.37 16 11 N -0.71 -21.07 3.59 -442.41 -1.59 -22.66 16 12 C 0.17 5.65 2.21 45.02 0.10 5.75 16 13 H 0.07 2.45 7.58 -2.39 -0.02 2.43 16 14 C -0.14 -5.81 5.77 30.67 0.18 -5.63 16 15 C 0.19 9.14 5.04 86.36 0.44 9.57 16 16 N -0.61 -29.10 2.99 -699.07 -2.09 -31.19 16 17 C -0.26 -13.85 9.58 84.03 0.81 -13.05 16 18 H 0.07 3.50 7.89 -2.91 -0.02 3.48 16 19 C -0.05 -2.73 4.92 84.86 0.42 -2.31 16 20 N -0.93 -54.52 11.20 21.65 0.24 -54.28 16 21 Si 0.96 44.63 29.59 68.60 2.03 46.66 16 22 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 23 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 24 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 25 C 0.15 5.55 5.50 86.36 0.48 6.02 16 26 C -0.11 -3.25 2.67 -10.72 -0.03 -3.28 16 27 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 28 C -0.13 -3.02 9.05 71.98 0.65 -2.36 16 29 C -0.13 -3.33 9.36 22.27 0.21 -3.12 16 30 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.06 0.87 8.14 -2.38 -0.02 0.85 16 33 H 0.08 1.31 8.08 -2.39 -0.02 1.29 16 34 H 0.06 1.28 8.09 -2.39 -0.02 1.26 16 35 H 0.14 2.11 8.06 -2.91 -0.02 2.08 16 36 H 0.14 2.07 8.06 -2.91 -0.02 2.04 16 37 H 0.13 2.46 8.06 -2.91 -0.02 2.43 16 38 H 0.11 2.36 8.09 -2.39 -0.02 2.34 16 39 H 0.13 2.13 8.08 -2.39 -0.02 2.11 16 40 H 0.41 11.09 6.73 -92.70 -0.62 10.47 16 41 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 42 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 43 H 0.04 2.48 6.06 -2.38 -0.01 2.46 16 44 H 0.00 0.18 7.74 -2.39 -0.02 0.17 16 45 H 0.25 14.14 8.31 -92.71 -0.77 13.36 16 46 H 0.03 0.90 6.64 -2.39 -0.02 0.89 16 47 H 0.06 2.13 7.93 -2.39 -0.02 2.11 16 48 H 0.07 1.39 8.14 -2.38 -0.02 1.37 16 49 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 50 H 0.06 1.30 7.53 -2.39 -0.02 1.28 16 51 H 0.11 2.97 8.06 -2.91 -0.02 2.94 16 Total: -1.00 -68.56 403.14 4.27 -64.29 By element: Atomic # 1 Polarization: 27.61 SS G_CDS: 0.27 Total: 27.88 kcal Atomic # 6 Polarization: -13.79 SS G_CDS: 5.45 Total: -8.33 kcal Atomic # 7 Polarization: -104.69 SS G_CDS: -3.44 Total: -108.13 kcal Atomic # 8 Polarization: -22.32 SS G_CDS: -0.05 Total: -22.37 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.66 kcal Total: -68.56 4.27 -64.29 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942191185.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.119 kcal (2) G-P(sol) polarization free energy of solvation -68.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.292 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds