Wall clock time and date at job start Tue Mar 31 2020 16:38:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50702 * 109.46820 * 2 1 4 4 C 1.38236 * 119.99703 * 90.00464 * 3 2 1 5 5 C 1.38234 * 119.99766 * 179.97438 * 4 3 2 6 6 C 1.38235 * 119.99848 * 359.97438 * 5 4 3 7 7 C 1.50700 * 120.00054 * 180.02562 * 6 5 4 8 8 C 1.50696 * 109.47128 * 89.99846 * 7 6 5 9 9 O 1.21282 * 120.00312 * 0.02562 * 8 7 6 10 10 N 1.34784 * 120.00167 * 180.02562 * 8 7 6 11 11 C 1.46496 * 119.99983 * 180.02562 * 10 8 7 12 12 H 1.09001 * 109.45189 * 325.02772 * 11 10 8 13 13 C 1.53044 * 109.46318 * 84.99810 * 11 10 8 14 14 C 1.53195 * 109.30923 * 58.65299 * 13 11 10 15 15 N 1.46921 * 108.89316 * 54.56851 * 14 13 11 16 16 C 1.36934 * 120.63215 * 126.46549 * 15 14 13 17 17 H 1.07998 * 119.99994 * 331.92264 * 16 15 14 18 18 C 1.38810 * 120.00388 * 151.92430 * 16 15 14 19 19 N 1.31626 * 119.99638 * 343.17136 * 18 16 15 20 20 Si 1.86793 * 120.00463 * 163.16956 * 18 16 15 21 21 H 1.48503 * 109.47141 * 90.00030 * 20 18 16 22 22 H 1.48500 * 109.47595 * 209.99829 * 20 18 16 23 23 H 1.48503 * 109.47257 * 330.00288 * 20 18 16 24 24 C 1.46960 * 118.71677 * 306.63540 * 15 14 13 25 25 C 1.53042 * 109.45932 * 205.06443 * 11 10 8 26 26 H 1.08996 * 109.50041 * 181.38854 * 25 11 10 27 27 C 1.53004 * 109.49428 * 61.29459 * 25 11 10 28 28 C 1.38236 * 120.00288 * 0.27489 * 6 5 4 29 29 C 1.38234 * 119.99720 * 359.51437 * 28 6 5 30 30 H 1.09003 * 109.47034 * 299.99666 * 1 2 3 31 31 H 1.09001 * 109.47173 * 60.00174 * 1 2 3 32 32 H 1.09007 * 109.46829 * 179.97438 * 1 2 3 33 33 H 1.09003 * 109.47034 * 240.00334 * 2 1 3 34 34 H 1.09001 * 109.47173 * 119.99826 * 2 1 3 35 35 H 1.07996 * 120.00445 * 359.96907 * 4 3 2 36 36 H 1.07995 * 120.00038 * 179.97438 * 5 4 3 37 37 H 1.09008 * 109.47122 * 330.00236 * 7 6 5 38 38 H 1.09003 * 109.47655 * 210.00268 * 7 6 5 39 39 H 0.97001 * 119.99738 * 359.97438 * 10 8 7 40 40 H 1.09001 * 109.49638 * 298.70092 * 13 11 10 41 41 H 1.08998 * 109.52210 * 178.62350 * 13 11 10 42 42 H 1.08998 * 109.57751 * 174.42300 * 14 13 11 43 43 H 1.08996 * 109.58755 * 294.70417 * 14 13 11 44 44 H 0.97000 * 119.99586 * 180.02562 * 19 18 16 45 45 H 1.09000 * 109.46633 * 293.57614 * 24 15 14 46 46 H 1.08996 * 109.71718 * 173.28868 * 24 15 14 47 47 H 1.09003 * 109.47265 * 60.00395 * 27 25 11 48 48 H 1.09002 * 109.46801 * 180.02562 * 27 25 11 49 49 H 1.09004 * 109.47397 * 299.99899 * 27 25 11 50 50 H 1.07999 * 120.00138 * 179.72892 * 28 6 5 51 51 H 1.07999 * 120.00068 * 180.27256 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2627 2.0724 1.1972 5 6 2.7239 3.3756 1.1972 6 6 2.9552 4.0269 0.0000 7 6 3.4585 5.4473 0.0000 8 6 4.9655 5.4462 0.0006 9 8 5.5712 4.3955 0.0005 10 7 5.6403 6.6130 0.0011 11 6 7.1053 6.6119 0.0011 12 1 7.4676 5.7691 0.5898 13 6 7.6151 6.4864 -1.4365 14 6 7.0756 7.6538 -2.2690 15 7 7.4367 8.9158 -1.6088 16 6 8.0989 9.8979 -2.2958 17 1 8.7460 9.6377 -3.1203 18 6 7.9387 11.2280 -1.9323 19 7 6.9258 11.5847 -1.1712 20 14 9.1603 12.5115 -2.5233 21 1 8.7030 13.0695 -3.8213 22 1 9.2550 13.6033 -1.5212 23 1 10.4941 11.8823 -2.6974 24 6 7.0767 9.1019 -0.1962 25 6 7.6161 7.9183 0.6131 26 1 8.7058 7.9288 0.5909 27 6 7.1331 8.0271 2.0608 28 6 2.7198 3.3770 -1.1971 29 6 2.2628 2.0724 -1.1972 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 2.0823 1.5635 2.1325 36 1 2.9036 3.8848 2.1325 37 1 3.0953 5.9616 0.8899 38 1 3.0959 5.9614 -0.8901 39 1 5.1559 7.4534 0.0008 40 1 7.2703 5.5448 -1.8638 41 1 8.7048 6.5101 -1.4398 42 1 7.5143 7.6246 -3.2663 43 1 5.9909 7.5782 -2.3445 44 1 6.8136 12.5142 -0.9175 45 1 5.9918 9.1458 -0.1006 46 1 7.5140 10.0284 0.1757 47 1 7.5148 7.1833 2.6356 48 1 7.4968 8.9579 2.4961 49 1 6.0433 8.0180 2.0820 50 1 2.8964 3.8874 -2.1324 51 1 2.0831 1.5632 -2.1324 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000943209315.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:38:06 Heat of formation + Delta-G solvation = -13.328430 kcal Electronic energy + Delta-G solvation = -28511.555299 eV Core-core repulsion = 24796.238658 eV Total energy + Delta-G solvation = -3715.316641 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.13426 -39.24070 -37.55425 -34.73663 -34.15415 -32.29386 -31.85621 -31.22297 -30.94751 -29.53921 -27.28722 -25.89278 -25.15932 -23.49656 -22.77466 -22.14321 -21.09188 -20.84986 -20.09965 -18.53949 -17.08353 -16.70939 -16.26809 -15.91883 -15.40242 -15.01464 -14.86738 -14.61810 -14.01582 -13.98199 -13.84964 -13.68956 -13.56206 -13.37655 -13.23551 -13.06223 -12.91666 -12.67903 -12.13470 -12.08572 -11.92115 -11.80606 -11.46437 -11.35268 -11.21652 -11.04616 -10.95647 -10.91499 -10.90307 -10.71434 -10.40068 -10.14451 -9.97141 -9.79586 -9.55200 -9.43068 -8.91233 -8.60259 -8.52986 -8.46680 -6.69947 -5.83778 -3.25474 1.28799 1.41471 2.94969 3.34558 3.42032 3.44624 3.46820 3.88347 4.46374 4.55648 4.66742 4.75323 4.91970 4.96972 5.12277 5.13723 5.25695 5.28881 5.31195 5.35819 5.42400 5.43535 5.51649 5.54834 5.59368 5.64308 5.67625 5.75211 5.85215 5.90321 6.03350 6.05549 6.07762 6.15963 6.21460 6.34099 6.38286 6.46180 6.55478 6.56212 6.56367 6.59775 6.65849 6.78896 6.92822 6.98971 7.04993 7.26923 7.56524 7.76008 7.91638 8.40759 8.57742 9.16990 9.80209 10.36899 11.24792 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.026891 B = 0.002330 C = 0.002276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.009730 B =12015.135351 C =12297.385703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.084 4.084 3 C -0.088 4.088 4 C -0.118 4.118 5 C -0.103 4.103 6 C -0.061 4.061 7 C -0.107 4.107 8 C 0.513 3.487 9 O -0.543 6.543 10 N -0.713 5.713 11 C 0.161 3.839 12 H 0.071 0.929 13 C -0.145 4.145 14 C 0.149 3.851 15 N -0.592 5.592 16 C -0.251 4.251 17 H 0.064 0.936 18 C 0.002 3.998 19 N -0.903 5.903 20 Si 0.902 3.098 21 H -0.287 1.287 22 H -0.290 1.290 23 H -0.280 1.280 24 C 0.179 3.821 25 C -0.128 4.128 26 H 0.077 0.923 27 C -0.138 4.138 28 C -0.102 4.102 29 C -0.117 4.117 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.070 0.930 34 H 0.069 0.931 35 H 0.118 0.882 36 H 0.119 0.881 37 H 0.100 0.900 38 H 0.102 0.898 39 H 0.403 0.597 40 H 0.055 0.945 41 H 0.065 0.935 42 H 0.051 0.949 43 H 0.016 0.984 44 H 0.253 0.747 45 H 0.015 0.985 46 H 0.090 0.910 47 H 0.043 0.957 48 H 0.054 0.946 49 H 0.049 0.951 50 H 0.120 0.880 51 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.181 -16.853 5.345 20.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.122 4.122 3 C -0.088 4.088 4 C -0.136 4.136 5 C -0.121 4.121 6 C -0.062 4.062 7 C -0.146 4.146 8 C 0.299 3.701 9 O -0.420 6.420 10 N -0.365 5.365 11 C 0.057 3.943 12 H 0.089 0.911 13 C -0.185 4.185 14 C 0.022 3.978 15 N -0.314 5.314 16 C -0.380 4.380 17 H 0.082 0.918 18 C -0.196 4.196 19 N -0.548 5.548 20 Si 0.731 3.269 21 H -0.214 1.214 22 H -0.216 1.216 23 H -0.205 1.205 24 C 0.053 3.947 25 C -0.149 4.149 26 H 0.095 0.905 27 C -0.196 4.196 28 C -0.120 4.120 29 C -0.135 4.135 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.136 0.864 36 H 0.137 0.863 37 H 0.118 0.882 38 H 0.120 0.880 39 H 0.239 0.761 40 H 0.074 0.926 41 H 0.084 0.916 42 H 0.070 0.930 43 H 0.034 0.966 44 H 0.063 0.937 45 H 0.033 0.967 46 H 0.108 0.892 47 H 0.062 0.938 48 H 0.073 0.927 49 H 0.068 0.932 50 H 0.138 0.862 51 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -10.771 -17.412 5.381 21.169 hybrid contribution 0.439 1.245 -0.312 1.357 sum -10.332 -16.166 5.069 19.844 Atomic orbital electron populations 1.21748 0.94856 1.01507 1.02212 1.20527 0.96036 0.92893 1.02714 1.19839 0.99614 0.96057 0.93289 1.20917 1.00540 0.94793 0.97357 1.20943 0.98907 0.94867 0.97378 1.19282 0.98590 0.94801 0.93500 1.20711 0.93322 0.95348 1.05265 1.20390 0.89321 0.84050 0.76389 1.90687 1.70261 1.31294 1.49807 1.46186 1.07852 1.08365 1.74067 1.20850 0.78767 0.98100 0.96581 0.91096 1.22373 1.00827 0.99290 0.96050 1.20841 0.96214 0.85990 0.94708 1.44044 1.67079 1.13785 1.06522 1.19164 1.19138 0.85618 1.14111 0.91779 1.25026 0.97142 0.97136 1.00319 1.70012 1.27973 1.16476 1.40328 0.86313 0.81294 0.81314 0.77951 1.21425 1.21576 1.20509 1.20777 0.95966 0.95031 0.82927 1.22131 1.01150 0.96730 0.94877 0.90499 1.21712 1.00793 1.00876 0.96201 1.20981 0.98654 0.94845 0.97499 1.20934 1.00424 0.94765 0.97391 0.92590 0.92565 0.92568 0.91164 0.91195 0.86399 0.86340 0.88182 0.87986 0.76113 0.92637 0.91589 0.93038 0.96572 0.93660 0.96663 0.89230 0.93756 0.92662 0.93185 0.86197 0.86341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.01 9.89 37.16 0.37 -0.64 16 2 C -0.08 -0.68 6.06 -27.88 -0.17 -0.85 16 3 C -0.09 -0.93 5.13 -104.62 -0.54 -1.47 16 4 C -0.12 -1.28 9.70 -39.58 -0.38 -1.67 16 5 C -0.10 -1.22 9.70 -39.58 -0.38 -1.60 16 6 C -0.06 -0.77 4.37 -104.62 -0.46 -1.22 16 7 C -0.11 -1.25 5.83 -29.04 -0.17 -1.42 16 8 C 0.51 7.84 7.79 -10.98 -0.09 7.76 16 9 O -0.54 -10.21 15.70 5.56 0.09 -10.12 16 10 N -0.71 -11.04 3.60 -53.76 -0.19 -11.23 16 11 C 0.16 2.77 2.21 -67.89 -0.15 2.61 16 12 H 0.07 1.26 7.57 -51.93 -0.39 0.87 16 13 C -0.15 -2.65 5.77 -26.61 -0.15 -2.80 16 14 C 0.15 3.08 6.25 -3.71 -0.02 3.05 16 15 N -0.59 -14.13 3.00 -172.30 -0.52 -14.65 16 16 C -0.25 -6.68 9.58 -15.06 -0.14 -6.83 16 17 H 0.06 1.70 7.88 -52.49 -0.41 1.29 16 18 C 0.00 0.06 4.92 -17.43 -0.09 -0.03 16 19 N -0.90 -25.13 11.20 55.49 0.62 -24.51 16 20 Si 0.90 21.25 29.59 -169.99 -5.03 16.22 16 21 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 22 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 23 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 24 C 0.18 3.92 4.28 -3.69 -0.02 3.90 16 25 C -0.13 -2.29 2.67 -90.50 -0.24 -2.53 16 26 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 27 C -0.14 -2.10 9.05 37.16 0.34 -1.76 16 28 C -0.10 -1.24 9.70 -39.58 -0.38 -1.63 16 29 C -0.12 -1.30 9.70 -39.58 -0.38 -1.69 16 30 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 32 H 0.06 0.32 8.14 -51.92 -0.42 -0.11 16 33 H 0.07 0.52 8.09 -51.93 -0.42 0.10 16 34 H 0.07 0.51 8.09 -51.93 -0.42 0.09 16 35 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 36 H 0.12 1.24 8.06 -52.49 -0.42 0.81 16 37 H 0.10 0.96 8.09 -51.92 -0.42 0.54 16 38 H 0.10 1.06 8.08 -51.93 -0.42 0.64 16 39 H 0.40 6.08 6.73 -40.82 -0.27 5.81 16 40 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 41 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 42 H 0.05 1.07 7.93 -51.93 -0.41 0.66 16 43 H 0.02 0.34 7.74 -51.93 -0.40 -0.06 16 44 H 0.25 6.86 8.31 -40.82 -0.34 6.52 16 45 H 0.02 0.34 6.64 -51.93 -0.34 0.00 16 46 H 0.09 2.25 6.07 -51.93 -0.32 1.94 16 47 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 48 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 49 H 0.05 0.72 7.54 -51.93 -0.39 0.33 16 50 H 0.12 1.34 8.06 -52.49 -0.42 0.92 16 51 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 LS Contribution 403.18 15.07 6.08 6.08 Total: -1.00 -30.56 403.18 -10.86 -41.42 By element: Atomic # 1 Polarization: 14.42 SS G_CDS: -8.84 Total: 5.59 kcal Atomic # 6 Polarization: -5.73 SS G_CDS: -3.07 Total: -8.80 kcal Atomic # 7 Polarization: -50.30 SS G_CDS: -0.09 Total: -50.39 kcal Atomic # 8 Polarization: -10.21 SS G_CDS: 0.09 Total: -10.12 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.03 Total: 16.22 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -30.56 -10.86 -41.42 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000943209315.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.090 kcal (2) G-P(sol) polarization free energy of solvation -30.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds