Wall clock time and date at job start Tue Mar 31 2020 16:38:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50702 * 109.46820 * 2 1 4 4 C 1.38236 * 119.99703 * 90.00464 * 3 2 1 5 5 C 1.38234 * 119.99766 * 179.97438 * 4 3 2 6 6 C 1.38235 * 119.99848 * 359.97438 * 5 4 3 7 7 C 1.50700 * 120.00054 * 180.02562 * 6 5 4 8 8 C 1.50696 * 109.47128 * 89.99846 * 7 6 5 9 9 O 1.21282 * 120.00312 * 0.02562 * 8 7 6 10 10 N 1.34784 * 120.00167 * 180.02562 * 8 7 6 11 11 C 1.46496 * 119.99983 * 180.02562 * 10 8 7 12 12 H 1.09001 * 109.45189 * 325.02772 * 11 10 8 13 13 C 1.53044 * 109.46318 * 84.99810 * 11 10 8 14 14 C 1.53195 * 109.30923 * 58.65299 * 13 11 10 15 15 N 1.46921 * 108.89316 * 54.56851 * 14 13 11 16 16 C 1.36934 * 120.63215 * 126.46549 * 15 14 13 17 17 H 1.07998 * 119.99994 * 331.92264 * 16 15 14 18 18 C 1.38810 * 120.00388 * 151.92430 * 16 15 14 19 19 N 1.31626 * 119.99638 * 343.17136 * 18 16 15 20 20 Si 1.86793 * 120.00463 * 163.16956 * 18 16 15 21 21 H 1.48503 * 109.47141 * 90.00030 * 20 18 16 22 22 H 1.48500 * 109.47595 * 209.99829 * 20 18 16 23 23 H 1.48503 * 109.47257 * 330.00288 * 20 18 16 24 24 C 1.46960 * 118.71677 * 306.63540 * 15 14 13 25 25 C 1.53042 * 109.45932 * 205.06443 * 11 10 8 26 26 H 1.08996 * 109.50041 * 181.38854 * 25 11 10 27 27 C 1.53004 * 109.49428 * 61.29459 * 25 11 10 28 28 C 1.38236 * 120.00288 * 0.27489 * 6 5 4 29 29 C 1.38234 * 119.99720 * 359.51437 * 28 6 5 30 30 H 1.09003 * 109.47034 * 299.99666 * 1 2 3 31 31 H 1.09001 * 109.47173 * 60.00174 * 1 2 3 32 32 H 1.09007 * 109.46829 * 179.97438 * 1 2 3 33 33 H 1.09003 * 109.47034 * 240.00334 * 2 1 3 34 34 H 1.09001 * 109.47173 * 119.99826 * 2 1 3 35 35 H 1.07996 * 120.00445 * 359.96907 * 4 3 2 36 36 H 1.07995 * 120.00038 * 179.97438 * 5 4 3 37 37 H 1.09008 * 109.47122 * 330.00236 * 7 6 5 38 38 H 1.09003 * 109.47655 * 210.00268 * 7 6 5 39 39 H 0.97001 * 119.99738 * 359.97438 * 10 8 7 40 40 H 1.09001 * 109.49638 * 298.70092 * 13 11 10 41 41 H 1.08998 * 109.52210 * 178.62350 * 13 11 10 42 42 H 1.08998 * 109.57751 * 174.42300 * 14 13 11 43 43 H 1.08996 * 109.58755 * 294.70417 * 14 13 11 44 44 H 0.97000 * 119.99586 * 180.02562 * 19 18 16 45 45 H 1.09000 * 109.46633 * 293.57614 * 24 15 14 46 46 H 1.08996 * 109.71718 * 173.28868 * 24 15 14 47 47 H 1.09003 * 109.47265 * 60.00395 * 27 25 11 48 48 H 1.09002 * 109.46801 * 180.02562 * 27 25 11 49 49 H 1.09004 * 109.47397 * 299.99899 * 27 25 11 50 50 H 1.07999 * 120.00138 * 179.72892 * 28 6 5 51 51 H 1.07999 * 120.00068 * 180.27256 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2627 2.0724 1.1972 5 6 2.7239 3.3756 1.1972 6 6 2.9552 4.0269 0.0000 7 6 3.4585 5.4473 0.0000 8 6 4.9655 5.4462 0.0006 9 8 5.5712 4.3955 0.0005 10 7 5.6403 6.6130 0.0011 11 6 7.1053 6.6119 0.0011 12 1 7.4676 5.7691 0.5898 13 6 7.6151 6.4864 -1.4365 14 6 7.0756 7.6538 -2.2690 15 7 7.4367 8.9158 -1.6088 16 6 8.0989 9.8979 -2.2958 17 1 8.7460 9.6377 -3.1203 18 6 7.9387 11.2280 -1.9323 19 7 6.9258 11.5847 -1.1712 20 14 9.1603 12.5115 -2.5233 21 1 8.7030 13.0695 -3.8213 22 1 9.2550 13.6033 -1.5212 23 1 10.4941 11.8823 -2.6974 24 6 7.0767 9.1019 -0.1962 25 6 7.6161 7.9183 0.6131 26 1 8.7058 7.9288 0.5909 27 6 7.1331 8.0271 2.0608 28 6 2.7198 3.3770 -1.1971 29 6 2.2628 2.0724 -1.1972 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 2.0823 1.5635 2.1325 36 1 2.9036 3.8848 2.1325 37 1 3.0953 5.9616 0.8899 38 1 3.0959 5.9614 -0.8901 39 1 5.1559 7.4534 0.0008 40 1 7.2703 5.5448 -1.8638 41 1 8.7048 6.5101 -1.4398 42 1 7.5143 7.6246 -3.2663 43 1 5.9909 7.5782 -2.3445 44 1 6.8136 12.5142 -0.9175 45 1 5.9918 9.1458 -0.1006 46 1 7.5140 10.0284 0.1757 47 1 7.5148 7.1833 2.6356 48 1 7.4968 8.9579 2.4961 49 1 6.0433 8.0180 2.0820 50 1 2.8964 3.8874 -2.1324 51 1 2.0831 1.5632 -2.1324 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000943209315.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:38:05 Heat of formation + Delta-G solvation = -27.732780 kcal Electronic energy + Delta-G solvation = -28512.179918 eV Core-core repulsion = 24796.238658 eV Total energy + Delta-G solvation = -3715.941261 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.33106 -40.26816 -38.97959 -35.92896 -35.44291 -33.72727 -33.51730 -32.23823 -31.77758 -31.11732 -28.23051 -27.50547 -26.80924 -24.38515 -23.69504 -23.60797 -22.61065 -21.95054 -21.13545 -20.06818 -18.75243 -18.12456 -17.20728 -16.84896 -16.79958 -16.41953 -16.06128 -15.79996 -15.68546 -15.33888 -14.99374 -14.71052 -14.64988 -14.58757 -14.48142 -14.25925 -14.12522 -13.69495 -13.58145 -13.12587 -12.95052 -12.89958 -12.88408 -12.75016 -12.53170 -12.51634 -12.46264 -12.18556 -12.03805 -11.79222 -11.69566 -11.67342 -11.62846 -11.44738 -11.11742 -10.82759 -10.53504 -9.91101 -9.76223 -9.37871 -8.64147 -7.86809 -5.30626 0.43345 0.56213 1.46559 1.49094 1.57759 1.74991 2.33142 2.51869 2.94174 3.28132 3.67492 3.73356 3.82672 3.91355 3.97534 4.05682 4.15017 4.17939 4.21635 4.23081 4.35225 4.49464 4.53030 4.59156 4.61154 4.63802 4.69379 4.75233 4.76765 4.79737 4.87456 4.97378 5.04107 5.07645 5.10240 5.10693 5.16979 5.21749 5.25925 5.31143 5.36079 5.40433 5.52906 5.54878 5.65451 5.68350 5.72624 5.76443 5.78467 6.16991 6.40912 6.67161 7.17145 7.35137 7.87050 8.38546 9.18911 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.026891 B = 0.002330 C = 0.002276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.009730 B =12015.135351 C =12297.385703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.084 4.084 3 C -0.092 4.092 4 C -0.127 4.127 5 C -0.116 4.116 6 C -0.080 4.080 7 C -0.099 4.099 8 C 0.515 3.485 9 O -0.578 6.578 10 N -0.709 5.709 11 C 0.169 3.831 12 H 0.072 0.928 13 C -0.134 4.134 14 C 0.151 3.849 15 N -0.608 5.608 16 C -0.263 4.263 17 H 0.060 0.940 18 C -0.044 4.044 19 N -0.927 5.927 20 Si 0.961 3.039 21 H -0.287 1.287 22 H -0.291 1.291 23 H -0.275 1.275 24 C 0.189 3.811 25 C -0.116 4.116 26 H 0.067 0.933 27 C -0.131 4.131 28 C -0.119 4.119 29 C -0.128 4.128 30 H 0.053 0.947 31 H 0.051 0.949 32 H 0.070 0.930 33 H 0.075 0.925 34 H 0.077 0.923 35 H 0.136 0.864 36 H 0.129 0.871 37 H 0.124 0.876 38 H 0.116 0.884 39 H 0.406 0.594 40 H 0.059 0.941 41 H 0.063 0.937 42 H 0.045 0.955 43 H 0.019 0.981 44 H 0.250 0.750 45 H 0.011 0.989 46 H 0.055 0.945 47 H 0.061 0.939 48 H 0.053 0.947 49 H 0.058 0.942 50 H 0.122 0.878 51 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.866 -18.043 6.012 22.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.121 4.121 3 C -0.092 4.092 4 C -0.145 4.145 5 C -0.134 4.134 6 C -0.081 4.081 7 C -0.139 4.139 8 C 0.303 3.697 9 O -0.458 6.458 10 N -0.361 5.361 11 C 0.064 3.936 12 H 0.090 0.910 13 C -0.174 4.174 14 C 0.025 3.975 15 N -0.331 5.331 16 C -0.393 4.393 17 H 0.077 0.923 18 C -0.240 4.240 19 N -0.573 5.573 20 Si 0.790 3.210 21 H -0.213 1.213 22 H -0.217 1.217 23 H -0.200 1.200 24 C 0.063 3.937 25 C -0.137 4.137 26 H 0.085 0.915 27 C -0.189 4.189 28 C -0.138 4.138 29 C -0.146 4.146 30 H 0.072 0.928 31 H 0.070 0.930 32 H 0.089 0.911 33 H 0.094 0.906 34 H 0.096 0.904 35 H 0.154 0.846 36 H 0.147 0.853 37 H 0.142 0.858 38 H 0.134 0.866 39 H 0.243 0.757 40 H 0.077 0.923 41 H 0.081 0.919 42 H 0.063 0.937 43 H 0.036 0.964 44 H 0.060 0.940 45 H 0.029 0.971 46 H 0.074 0.926 47 H 0.080 0.920 48 H 0.072 0.928 49 H 0.078 0.922 50 H 0.140 0.860 51 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -11.467 -18.614 6.048 22.684 hybrid contribution 0.626 1.544 -0.557 1.757 sum -10.841 -17.069 5.491 20.954 Atomic orbital electron populations 1.21723 0.93956 1.02397 1.01930 1.20580 0.96735 0.91373 1.03406 1.20185 0.98815 0.97227 0.93006 1.21221 1.00168 0.94707 0.98379 1.21191 0.99040 0.95475 0.97660 1.19438 0.99458 0.95270 0.93911 1.20719 0.90366 0.95691 1.07083 1.20952 0.90673 0.83092 0.74972 1.90671 1.71308 1.32418 1.51372 1.46133 1.07087 1.08811 1.74070 1.20659 0.79921 0.97435 0.95579 0.90964 1.22232 1.00577 0.98128 0.96474 1.20875 0.96301 0.85592 0.94714 1.44268 1.67189 1.14183 1.07455 1.19408 1.19188 0.86570 1.14157 0.92272 1.25678 0.98629 0.98743 1.00993 1.70134 1.29218 1.16473 1.41448 0.85376 0.79471 0.78941 0.77220 1.21340 1.21738 1.20022 1.20604 0.95434 0.95170 0.82482 1.21934 1.00426 0.95247 0.96059 0.91480 1.21648 1.01401 1.01593 0.94224 1.21186 0.99272 0.95570 0.97724 1.21200 1.00315 0.94644 0.98451 0.92770 0.92959 0.91102 0.90606 0.90392 0.84568 0.85309 0.85764 0.86631 0.75729 0.92275 0.91861 0.93679 0.96357 0.94047 0.97113 0.92643 0.92028 0.92754 0.92246 0.85965 0.84903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.69 9.89 71.98 0.71 -0.98 16 2 C -0.08 -1.18 6.06 29.85 0.18 -1.00 16 3 C -0.09 -1.82 5.13 -19.87 -0.10 -1.92 16 4 C -0.13 -2.57 9.70 22.27 0.22 -2.35 16 5 C -0.12 -2.58 9.70 22.27 0.22 -2.37 16 6 C -0.08 -1.92 4.37 -19.87 -0.09 -2.01 16 7 C -0.10 -2.16 5.83 29.10 0.17 -1.99 16 8 C 0.52 15.06 7.79 87.65 0.68 15.74 16 9 O -0.58 -21.15 15.70 -3.03 -0.05 -21.20 16 10 N -0.71 -21.02 3.60 -442.40 -1.59 -22.62 16 11 C 0.17 5.61 2.21 45.02 0.10 5.71 16 12 H 0.07 2.45 7.57 -2.39 -0.02 2.44 16 13 C -0.13 -4.81 5.77 30.67 0.18 -4.63 16 14 C 0.15 6.22 6.25 86.36 0.54 6.76 16 15 N -0.61 -29.22 3.00 -699.03 -2.10 -31.31 16 16 C -0.26 -14.15 9.58 84.03 0.81 -13.34 16 17 H 0.06 3.17 7.88 -2.91 -0.02 3.15 16 18 C -0.04 -2.41 4.92 84.86 0.42 -1.99 16 19 N -0.93 -52.20 11.20 21.65 0.24 -51.95 16 20 Si 0.96 44.01 29.59 68.60 2.03 46.04 16 21 H -0.29 -13.00 7.11 99.48 0.71 -12.29 16 22 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 23 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 24 C 0.19 8.30 4.28 86.36 0.37 8.67 16 25 C -0.12 -4.06 2.67 -10.71 -0.03 -4.09 16 26 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 27 C -0.13 -3.77 9.05 71.98 0.65 -3.11 16 28 C -0.12 -2.83 9.70 22.27 0.22 -2.62 16 29 C -0.13 -2.73 9.70 22.27 0.22 -2.51 16 30 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.07 0.64 8.14 -2.38 -0.02 0.62 16 33 H 0.08 0.99 8.09 -2.39 -0.02 0.97 16 34 H 0.08 0.98 8.09 -2.39 -0.02 0.96 16 35 H 0.14 2.14 8.06 -2.91 -0.02 2.11 16 36 H 0.13 2.48 8.06 -2.91 -0.02 2.45 16 37 H 0.12 2.09 8.09 -2.38 -0.02 2.07 16 38 H 0.12 2.20 8.08 -2.39 -0.02 2.18 16 39 H 0.41 11.72 6.73 -92.71 -0.62 11.09 16 40 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 41 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 42 H 0.04 1.88 7.93 -2.39 -0.02 1.86 16 43 H 0.02 0.75 7.74 -2.39 -0.02 0.74 16 44 H 0.25 13.71 8.31 -92.71 -0.77 12.94 16 45 H 0.01 0.48 6.64 -2.39 -0.02 0.47 16 46 H 0.06 2.83 6.07 -2.39 -0.01 2.82 16 47 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 48 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 49 H 0.06 1.59 7.54 -2.38 -0.02 1.58 16 50 H 0.12 2.69 8.06 -2.91 -0.02 2.67 16 51 H 0.13 2.30 8.06 -2.91 -0.02 2.27 16 Total: -1.00 -65.20 403.18 4.26 -60.94 By element: Atomic # 1 Polarization: 27.86 SS G_CDS: 0.27 Total: 28.14 kcal Atomic # 6 Polarization: -13.49 SS G_CDS: 5.45 Total: -8.04 kcal Atomic # 7 Polarization: -102.44 SS G_CDS: -3.45 Total: -105.88 kcal Atomic # 8 Polarization: -21.15 SS G_CDS: -0.05 Total: -21.20 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 2.03 Total: 46.04 kcal Total: -65.20 4.26 -60.94 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000943209315.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.211 kcal (2) G-P(sol) polarization free energy of solvation -65.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.944 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds