Wall clock time and date at job start Tue Mar 31 2020 16:38:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.50695 * 109.47133 * 2 1 4 4 C 1.38234 * 120.00067 * 90.00193 * 3 2 1 5 5 C 1.38234 * 120.00144 * 179.97438 * 4 3 2 6 6 C 1.38226 * 120.00111 * 0.02562 * 5 4 3 7 7 C 1.50708 * 120.00160 * 179.97438 * 6 5 4 8 8 C 1.50696 * 109.46977 * 89.99948 * 7 6 5 9 9 O 1.21280 * 120.00245 * 0.02562 * 8 7 6 10 10 N 1.34777 * 120.00018 * 179.97438 * 8 7 6 11 11 C 1.46499 * 120.00079 * 179.97438 * 10 8 7 12 12 H 1.09001 * 109.45211 * 34.96906 * 11 10 8 13 13 C 1.53037 * 109.46120 * 275.00182 * 11 10 8 14 14 C 1.53189 * 109.31353 * 178.61456 * 13 11 10 15 15 N 1.46926 * 108.77599 * 54.63845 * 14 13 11 16 16 C 1.36932 * 120.63353 * 126.36889 * 15 14 13 17 17 H 1.08001 * 120.00252 * 207.69479 * 16 15 14 18 18 C 1.38810 * 120.00298 * 27.70100 * 16 15 14 19 19 N 1.31622 * 119.99938 * 17.34781 * 18 16 15 20 20 Si 1.86796 * 120.00412 * 197.35145 * 18 16 15 21 21 H 1.48498 * 109.47213 * 59.99735 * 20 18 16 22 22 H 1.48506 * 109.47488 * 179.97438 * 20 18 16 23 23 H 1.48504 * 109.47250 * 299.99792 * 20 18 16 24 24 C 1.46934 * 118.73623 * 306.39038 * 15 14 13 25 25 C 1.53046 * 109.45916 * 154.93419 * 11 10 8 26 26 H 1.09004 * 109.49623 * 61.43783 * 25 11 10 27 27 C 1.52996 * 109.49712 * 301.34141 * 25 11 10 28 28 C 1.38239 * 120.00160 * 0.25681 * 6 5 4 29 29 C 1.38238 * 120.00076 * 270.02251 * 3 2 1 30 30 H 1.09004 * 109.47214 * 60.00447 * 1 2 3 31 31 H 1.09005 * 109.47329 * 179.97438 * 1 2 3 32 32 H 1.08991 * 109.47364 * 299.99801 * 1 2 3 33 33 H 1.09003 * 109.47029 * 240.00233 * 2 1 3 34 34 H 1.08996 * 109.47257 * 120.00212 * 2 1 3 35 35 H 1.08000 * 120.00038 * 359.97438 * 4 3 2 36 36 H 1.08003 * 119.99870 * 179.97438 * 5 4 3 37 37 H 1.08996 * 109.46628 * 330.00133 * 7 6 5 38 38 H 1.09006 * 109.47037 * 210.00066 * 7 6 5 39 39 H 0.96999 * 119.99790 * 0.02562 * 10 8 7 40 40 H 1.08999 * 109.50088 * 58.66651 * 13 11 10 41 41 H 1.09001 * 109.50156 * 298.56544 * 13 11 10 42 42 H 1.08999 * 109.58920 * 294.84822 * 14 13 11 43 43 H 1.09003 * 109.58946 * 174.42353 * 14 13 11 44 44 H 0.96995 * 120.00764 * 180.02562 * 19 18 16 45 45 H 1.08998 * 109.58226 * 173.39589 * 24 15 14 46 46 H 1.09001 * 109.58425 * 293.82094 * 24 15 14 47 47 H 1.09003 * 109.46669 * 300.15651 * 27 25 11 48 48 H 1.08994 * 109.47327 * 60.15744 * 27 25 11 49 49 H 1.09001 * 109.47041 * 180.16367 * 27 25 11 50 50 H 1.07998 * 120.00184 * 179.73158 * 28 6 5 51 51 H 1.07997 * 120.00000 * 0.02562 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 6 2.2627 2.0724 1.1971 5 6 2.7240 3.3755 1.1971 6 6 2.9543 4.0272 0.0001 7 6 3.4567 5.4480 0.0001 8 6 4.9636 5.4480 0.0001 9 8 5.5701 4.3977 -0.0004 10 7 5.6376 6.6152 -0.0004 11 6 7.1026 6.6152 0.0001 12 1 7.4657 5.7725 -0.5883 13 6 7.6119 6.4903 1.4378 14 6 9.1434 6.4558 1.4315 15 7 9.6402 7.6390 0.7161 16 6 10.5478 8.4795 1.3034 17 1 10.5806 9.5213 1.0208 18 6 11.4258 7.9924 2.2618 19 7 11.6321 6.6967 2.3675 20 14 12.3146 9.1756 3.4017 21 1 11.3190 9.9484 4.1870 22 1 13.1877 8.4097 4.3272 23 1 13.1434 10.1093 2.5976 24 6 9.1441 7.9036 -0.6414 25 6 7.6126 7.9219 -0.6119 26 1 7.2704 8.7636 -0.0098 27 6 7.0760 8.0616 -2.0379 28 6 2.7183 3.3776 -1.1971 29 6 2.2622 2.0726 -1.1972 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3633 0.5137 0.8899 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8899 35 1 2.0823 1.5634 2.1324 36 1 2.9036 3.8847 2.1325 37 1 3.0934 5.9618 0.8901 38 1 3.0933 5.9619 -0.8899 39 1 5.1526 7.4552 -0.0004 40 1 7.2292 5.5709 1.8809 41 1 7.2697 7.3455 2.0206 42 1 9.4865 5.5527 0.9267 43 1 9.5134 6.4667 2.4568 44 1 12.2453 6.3562 3.0374 45 1 9.5146 8.8698 -0.9839 46 1 9.4873 7.1186 -1.3153 47 1 7.4176 7.2188 -2.6388 48 1 5.9863 8.0745 -2.0163 49 1 7.4419 8.9910 -2.4744 50 1 2.8942 3.8882 -2.1324 51 1 2.0815 1.5638 -2.1325 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000943209316.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:38:09 Heat of formation + Delta-G solvation = -14.335899 kcal Electronic energy + Delta-G solvation = -28116.965832 eV Core-core repulsion = 24401.605503 eV Total energy + Delta-G solvation = -3715.360328 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.14286 -39.19674 -37.57893 -34.81650 -34.42755 -32.66696 -31.51659 -31.10519 -30.99230 -29.76829 -27.39125 -25.85954 -24.92917 -23.45960 -22.82500 -22.12412 -21.00373 -20.76048 -20.08262 -19.21034 -17.01237 -16.55919 -16.43797 -15.96402 -15.72464 -15.11740 -14.78972 -14.68972 -13.98192 -13.95201 -13.86665 -13.80517 -13.56057 -13.39901 -13.24072 -12.97200 -12.81107 -12.69386 -12.24081 -12.17719 -11.94520 -11.84604 -11.47385 -11.38826 -11.29407 -11.05985 -10.98148 -10.94675 -10.77969 -10.64632 -10.32314 -10.23366 -9.99896 -9.76532 -9.75960 -9.42724 -8.95516 -8.64695 -8.57688 -8.39742 -6.67652 -5.77342 -3.20123 1.23686 1.37099 2.86298 3.35408 3.39442 3.44933 3.45728 3.80383 4.49840 4.50161 4.62893 4.68126 4.86434 4.92446 5.01814 5.10382 5.17496 5.20423 5.29356 5.31874 5.32552 5.41903 5.42437 5.50577 5.51469 5.62838 5.63744 5.71634 5.86911 5.92539 5.98625 6.00339 6.00919 6.12015 6.26741 6.29143 6.33539 6.42306 6.46335 6.52288 6.53436 6.63779 6.68729 6.80077 6.94168 6.97512 6.98375 7.39162 7.68661 7.78104 7.80114 8.45524 8.49063 9.21791 9.85350 10.42038 11.31100 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.020996 B = 0.002280 C = 0.002143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1333.238115 B =12275.948240 C =13061.591130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.085 4.085 3 C -0.086 4.086 4 C -0.117 4.117 5 C -0.101 4.101 6 C -0.065 4.065 7 C -0.104 4.104 8 C 0.510 3.490 9 O -0.531 6.531 10 N -0.725 5.725 11 C 0.158 3.842 12 H 0.080 0.920 13 C -0.147 4.147 14 C 0.173 3.827 15 N -0.592 5.592 16 C -0.255 4.255 17 H 0.065 0.935 18 C 0.002 3.998 19 N -0.901 5.901 20 Si 0.903 3.097 21 H -0.284 1.284 22 H -0.291 1.291 23 H -0.283 1.283 24 C 0.155 3.845 25 C -0.115 4.115 26 H 0.070 0.930 27 C -0.141 4.141 28 C -0.103 4.103 29 C -0.117 4.117 30 H 0.055 0.945 31 H 0.056 0.944 32 H 0.055 0.945 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.119 0.881 36 H 0.119 0.881 37 H 0.100 0.900 38 H 0.099 0.901 39 H 0.394 0.606 40 H 0.052 0.948 41 H 0.054 0.946 42 H 0.020 0.980 43 H 0.089 0.911 44 H 0.255 0.745 45 H 0.057 0.943 46 H 0.020 0.980 47 H 0.051 0.949 48 H 0.046 0.954 49 H 0.053 0.947 50 H 0.118 0.882 51 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.335 -5.842 -6.365 24.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.123 4.123 3 C -0.086 4.086 4 C -0.135 4.135 5 C -0.120 4.120 6 C -0.066 4.066 7 C -0.144 4.144 8 C 0.295 3.705 9 O -0.407 6.407 10 N -0.375 5.375 11 C 0.055 3.945 12 H 0.098 0.902 13 C -0.187 4.187 14 C 0.047 3.953 15 N -0.314 5.314 16 C -0.384 4.384 17 H 0.083 0.917 18 C -0.197 4.197 19 N -0.545 5.545 20 Si 0.733 3.267 21 H -0.211 1.211 22 H -0.217 1.217 23 H -0.209 1.209 24 C 0.027 3.973 25 C -0.136 4.136 26 H 0.089 0.911 27 C -0.199 4.199 28 C -0.121 4.121 29 C -0.136 4.136 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.137 0.863 36 H 0.137 0.863 37 H 0.118 0.882 38 H 0.117 0.883 39 H 0.227 0.773 40 H 0.071 0.929 41 H 0.073 0.927 42 H 0.038 0.962 43 H 0.107 0.893 44 H 0.065 0.935 45 H 0.076 0.924 46 H 0.038 0.962 47 H 0.070 0.930 48 H 0.065 0.935 49 H 0.072 0.928 50 H 0.137 0.863 51 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -22.734 -6.699 -6.248 24.510 hybrid contribution 0.323 1.032 0.668 1.271 sum -22.410 -5.668 -5.579 23.780 Atomic orbital electron populations 1.21742 0.94847 1.01548 1.02146 1.20535 0.96022 0.92861 1.02844 1.19856 0.99411 0.96067 0.93272 1.20945 1.00317 0.94762 0.97449 1.20961 0.98651 0.94918 0.97420 1.19262 0.98923 0.94828 0.93557 1.20708 0.93288 0.95499 1.04916 1.20429 0.89287 0.84166 0.76638 1.90741 1.70101 1.31184 1.48648 1.46306 1.08233 1.07882 1.75097 1.21029 0.77250 0.98466 0.97796 0.90162 1.22562 1.00860 1.00392 0.94873 1.20763 0.86775 0.88360 0.99406 1.44094 1.48316 1.28314 1.10720 1.19125 1.10036 0.90292 1.18972 0.91695 1.25054 0.97239 0.95730 1.01635 1.70029 1.37600 1.11374 1.35502 0.86372 0.79227 0.80275 0.80876 1.21076 1.21651 1.20887 1.20893 0.89292 0.98867 0.88216 1.21965 0.99679 0.96584 0.95322 0.91124 1.21763 0.99856 1.01463 0.96818 1.20938 0.98913 0.94905 0.97315 1.20931 1.00474 0.94736 0.97409 0.92623 0.92528 0.92591 0.91116 0.91083 0.86281 0.86254 0.88214 0.88291 0.77295 0.92886 0.92746 0.96208 0.89255 0.93527 0.92431 0.96243 0.92959 0.93479 0.92800 0.86348 0.86330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 9.89 37.15 0.37 -0.60 16 2 C -0.09 -0.68 6.06 -27.89 -0.17 -0.85 16 3 C -0.09 -0.89 5.13 -104.63 -0.54 -1.43 16 4 C -0.12 -1.27 9.70 -39.58 -0.38 -1.65 16 5 C -0.10 -1.18 9.70 -39.59 -0.38 -1.57 16 6 C -0.07 -0.77 4.37 -104.62 -0.46 -1.23 16 7 C -0.10 -1.05 5.83 -29.03 -0.17 -1.22 16 8 C 0.51 7.33 7.79 -10.99 -0.09 7.24 16 9 O -0.53 -10.18 15.69 5.56 0.09 -10.09 16 10 N -0.72 -9.82 4.36 -53.77 -0.23 -10.06 16 11 C 0.16 2.74 1.88 -67.89 -0.13 2.61 16 12 H 0.08 1.60 7.57 -51.93 -0.39 1.21 16 13 C -0.15 -2.95 5.65 -26.61 -0.15 -3.10 16 14 C 0.17 4.26 5.31 -3.71 -0.02 4.24 16 15 N -0.59 -14.82 2.99 -172.32 -0.52 -15.33 16 16 C -0.25 -6.96 9.58 -15.06 -0.14 -7.11 16 17 H 0.07 1.73 7.89 -52.49 -0.41 1.31 16 18 C 0.00 0.06 4.91 -17.43 -0.09 -0.02 16 19 N -0.90 -26.47 11.19 55.49 0.62 -25.85 16 20 Si 0.90 21.73 29.59 -169.99 -5.03 16.70 16 21 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 22 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 23 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 24 C 0.15 3.18 5.80 -3.71 -0.02 3.16 16 25 C -0.11 -1.88 2.46 -90.50 -0.22 -2.10 16 26 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 27 C -0.14 -1.85 9.02 37.16 0.34 -1.52 16 28 C -0.10 -1.16 9.70 -39.58 -0.38 -1.55 16 29 C -0.12 -1.25 9.70 -39.58 -0.38 -1.63 16 30 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.07 0.52 8.09 -51.93 -0.42 0.10 16 34 H 0.07 0.53 8.09 -51.93 -0.42 0.11 16 35 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 36 H 0.12 1.25 8.06 -52.48 -0.42 0.83 16 37 H 0.10 0.81 8.09 -51.93 -0.42 0.39 16 38 H 0.10 0.76 8.08 -51.93 -0.42 0.34 16 39 H 0.39 4.12 8.31 -40.82 -0.34 3.78 16 40 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 41 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 42 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.09 2.45 6.04 -51.93 -0.31 2.14 16 44 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 45 H 0.06 1.15 7.93 -51.93 -0.41 0.74 16 46 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 47 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 48 H 0.05 0.52 7.37 -51.93 -0.38 0.14 16 49 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 50 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 51 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 LS Contribution 407.07 15.07 6.13 6.13 Total: -1.00 -32.73 407.07 -10.95 -43.68 By element: Atomic # 1 Polarization: 12.14 SS G_CDS: -8.99 Total: 3.15 kcal Atomic # 6 Polarization: -5.30 SS G_CDS: -3.02 Total: -8.32 kcal Atomic # 7 Polarization: -51.11 SS G_CDS: -0.13 Total: -51.24 kcal Atomic # 8 Polarization: -10.18 SS G_CDS: 0.09 Total: -10.09 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.03 Total: 16.70 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -32.73 -10.95 -43.68 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000943209316.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.340 kcal (2) G-P(sol) polarization free energy of solvation -32.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds