Wall clock time and date at job start Tue Mar 31 2020 16:38:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50700 * 109.47158 * 2 1 4 4 C 1.38232 * 120.00085 * 90.00468 * 3 2 1 5 5 C 1.38230 * 120.00111 * 179.97438 * 4 3 2 6 6 C 1.38239 * 120.00273 * 359.97211 * 5 4 3 7 7 C 1.50692 * 120.00303 * 180.02562 * 6 5 4 8 8 C 1.50697 * 109.47397 * 90.00059 * 7 6 5 9 9 O 1.21288 * 119.99810 * 0.02562 * 8 7 6 10 10 N 1.34781 * 120.00318 * 179.97438 * 8 7 6 11 11 C 1.46505 * 119.99852 * 179.97438 * 10 8 7 12 12 H 1.08999 * 109.46127 * 325.02793 * 11 10 8 13 13 C 1.53038 * 109.45669 * 85.00238 * 11 10 8 14 14 C 1.53196 * 109.30843 * 181.38113 * 13 11 10 15 15 N 1.46921 * 108.77725 * 305.36794 * 14 13 11 16 16 C 1.36942 * 120.62755 * 233.62956 * 15 14 13 17 17 H 1.08001 * 119.99891 * 27.67296 * 16 15 14 18 18 C 1.38814 * 119.99652 * 207.66851 * 16 15 14 19 19 N 1.31612 * 120.00369 * 17.36555 * 18 16 15 20 20 Si 1.86800 * 119.99830 * 197.36288 * 18 16 15 21 21 H 1.48506 * 109.47193 * 0.02562 * 20 18 16 22 22 H 1.48499 * 109.47322 * 120.00260 * 20 18 16 23 23 H 1.48503 * 109.47216 * 240.00476 * 20 18 16 24 24 C 1.46923 * 118.74131 * 53.60843 * 15 14 13 25 25 C 1.53042 * 109.45639 * 205.07156 * 11 10 8 26 26 H 1.08999 * 109.49566 * 298.56370 * 25 11 10 27 27 C 1.52992 * 109.49838 * 58.66254 * 25 11 10 28 28 C 1.38246 * 119.99480 * 0.28018 * 6 5 4 29 29 C 1.38228 * 119.99847 * 359.53271 * 28 6 5 30 30 H 1.08999 * 109.47605 * 59.99674 * 1 2 3 31 31 H 1.08997 * 109.47562 * 180.02562 * 1 2 3 32 32 H 1.09009 * 109.47087 * 299.99893 * 1 2 3 33 33 H 1.08999 * 109.47133 * 239.99986 * 2 1 3 34 34 H 1.09005 * 109.47370 * 119.99929 * 2 1 3 35 35 H 1.07998 * 119.99887 * 359.97438 * 4 3 2 36 36 H 1.08001 * 120.00375 * 180.02562 * 5 4 3 37 37 H 1.09001 * 109.47122 * 329.99720 * 7 6 5 38 38 H 1.09005 * 109.47126 * 210.00167 * 7 6 5 39 39 H 0.96996 * 119.99563 * 0.02562 * 10 8 7 40 40 H 1.08996 * 109.50157 * 301.33363 * 13 11 10 41 41 H 1.08997 * 109.49894 * 61.40478 * 13 11 10 42 42 H 1.09006 * 109.58601 * 65.15840 * 14 13 11 43 43 H 1.09002 * 109.58464 * 185.43452 * 14 13 11 44 44 H 0.96999 * 120.00552 * 179.97438 * 19 18 16 45 45 H 1.09000 * 109.58781 * 66.17815 * 24 15 14 46 46 H 1.09000 * 109.58467 * 186.60646 * 24 15 14 47 47 H 1.09006 * 109.47163 * 60.00157 * 27 25 11 48 48 H 1.09004 * 109.47054 * 179.97438 * 27 25 11 49 49 H 1.08999 * 109.47323 * 299.99869 * 27 25 11 50 50 H 1.08001 * 119.99536 * 179.73156 * 28 6 5 51 51 H 1.08000 * 119.99759 * 180.23034 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2628 2.0724 1.1971 5 6 2.7241 3.3755 1.1971 6 6 2.9555 4.0269 0.0000 7 6 3.4589 5.4472 0.0000 8 6 4.9659 5.4461 0.0005 9 8 5.5715 4.3953 0.0004 10 7 5.6407 6.6128 0.0001 11 6 7.1058 6.6116 0.0012 12 1 7.4678 5.7697 0.5912 13 6 7.6165 6.4844 -1.4358 14 6 9.1480 6.4487 -1.4278 15 7 9.6449 7.6325 -0.7133 16 6 10.5539 8.4714 -1.3008 17 1 10.5874 8.5633 -2.3764 18 6 11.4321 9.2038 -0.5138 19 7 11.6373 8.8585 0.7395 20 14 12.3227 10.6796 -1.2337 21 1 11.9208 10.8567 -2.6524 22 1 11.9657 11.8977 -0.4629 23 1 13.7892 10.4581 -1.1582 24 6 9.1476 7.8993 0.6432 25 6 7.6161 7.9188 0.6120 26 1 7.2752 8.7599 0.0084 27 6 7.0780 8.0608 2.0372 28 6 2.7200 3.3769 -1.1972 29 6 2.2624 2.0726 -1.1972 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3634 0.5139 0.8901 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 2.0825 1.5634 2.1324 36 1 2.9046 3.8845 2.1324 37 1 3.0956 5.9615 0.8897 38 1 3.0963 5.9613 -0.8902 39 1 5.1563 7.4532 -0.0002 40 1 7.2335 5.5647 -1.8780 41 1 7.2752 7.3387 -2.0202 42 1 9.4899 5.5460 -0.9213 43 1 9.5190 6.4554 -2.4527 44 1 12.2512 9.3700 1.2893 45 1 9.4894 7.1150 1.3186 46 1 9.5184 8.8657 0.9848 47 1 7.4207 7.2200 2.6404 48 1 7.4422 8.9917 2.4719 49 1 5.9883 8.0717 2.0147 50 1 2.8967 3.8873 -2.1325 51 1 2.0820 1.5636 -2.1325 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000943209318.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:38:15 Heat of formation + Delta-G solvation = -14.934152 kcal Electronic energy + Delta-G solvation = -28102.686883 eV Core-core repulsion = 24387.300613 eV Total energy + Delta-G solvation = -3715.386270 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.15922 -39.20762 -37.56659 -34.83268 -34.41408 -32.40657 -31.84442 -31.35483 -31.01417 -29.40757 -27.37922 -25.91906 -24.94938 -23.49374 -22.84498 -22.17115 -20.90151 -20.77193 -20.08486 -19.18774 -17.10887 -16.53963 -16.43486 -15.98358 -15.73363 -15.14452 -14.85530 -14.66718 -13.97732 -13.94198 -13.86225 -13.77630 -13.59582 -13.42446 -13.15820 -12.97595 -12.89082 -12.61913 -12.21778 -12.17000 -11.95762 -11.86537 -11.46708 -11.40268 -11.30127 -11.08831 -11.00662 -10.96658 -10.73959 -10.65429 -10.32745 -10.16806 -9.99095 -9.85338 -9.65698 -9.42824 -8.97735 -8.66131 -8.59573 -8.45226 -6.68867 -5.79900 -3.21599 1.21596 1.34971 2.83879 3.33889 3.37122 3.44378 3.46591 3.78729 4.48333 4.48876 4.60911 4.66335 4.84616 4.90411 5.01983 5.08572 5.15875 5.25828 5.27985 5.30670 5.34254 5.40566 5.46407 5.48747 5.59930 5.61087 5.69117 5.69637 5.85251 5.89305 5.97167 5.98842 6.09248 6.14995 6.26180 6.31374 6.36792 6.48549 6.50213 6.51303 6.52720 6.60784 6.69891 6.80278 6.92046 6.98130 7.00192 7.33620 7.61513 7.76428 7.81031 8.43841 8.46703 9.20342 9.83694 10.40663 11.28860 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.031596 B = 0.002120 C = 0.002072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 885.974681 B =13203.352070 C =13508.011739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.085 4.085 3 C -0.086 4.086 4 C -0.117 4.117 5 C -0.102 4.102 6 C -0.065 4.065 7 C -0.105 4.105 8 C 0.510 3.490 9 O -0.533 6.533 10 N -0.724 5.724 11 C 0.158 3.842 12 H 0.080 0.920 13 C -0.139 4.139 14 C 0.147 3.853 15 N -0.593 5.593 16 C -0.251 4.251 17 H 0.066 0.934 18 C 0.001 3.999 19 N -0.902 5.902 20 Si 0.901 3.099 21 H -0.278 1.278 22 H -0.289 1.289 23 H -0.290 1.290 24 C 0.181 3.819 25 C -0.122 4.122 26 H 0.067 0.933 27 C -0.138 4.138 28 C -0.102 4.102 29 C -0.117 4.117 30 H 0.055 0.945 31 H 0.056 0.944 32 H 0.055 0.945 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.119 0.881 36 H 0.119 0.881 37 H 0.099 0.901 38 H 0.100 0.900 39 H 0.395 0.605 40 H 0.054 0.946 41 H 0.057 0.943 42 H 0.020 0.980 43 H 0.055 0.945 44 H 0.253 0.747 45 H 0.020 0.980 46 H 0.092 0.908 47 H 0.050 0.950 48 H 0.054 0.946 49 H 0.042 0.958 50 H 0.119 0.881 51 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.378 -9.953 0.377 25.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.123 4.123 3 C -0.086 4.086 4 C -0.135 4.135 5 C -0.120 4.120 6 C -0.065 4.065 7 C -0.145 4.145 8 C 0.295 3.705 9 O -0.410 6.410 10 N -0.374 5.374 11 C 0.054 3.946 12 H 0.098 0.902 13 C -0.179 4.179 14 C 0.020 3.980 15 N -0.315 5.315 16 C -0.381 4.381 17 H 0.084 0.916 18 C -0.197 4.197 19 N -0.547 5.547 20 Si 0.731 3.269 21 H -0.203 1.203 22 H -0.216 1.216 23 H -0.217 1.217 24 C 0.054 3.946 25 C -0.143 4.143 26 H 0.085 0.915 27 C -0.196 4.196 28 C -0.120 4.120 29 C -0.135 4.135 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.137 0.863 36 H 0.137 0.863 37 H 0.118 0.882 38 H 0.118 0.882 39 H 0.228 0.772 40 H 0.072 0.928 41 H 0.076 0.924 42 H 0.038 0.962 43 H 0.074 0.926 44 H 0.063 0.937 45 H 0.038 0.962 46 H 0.110 0.890 47 H 0.069 0.931 48 H 0.073 0.927 49 H 0.061 0.939 50 H 0.137 0.863 51 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -22.789 -10.643 0.479 25.156 hybrid contribution 0.336 1.265 -0.293 1.341 sum -22.454 -9.378 0.186 24.334 Atomic orbital electron populations 1.21744 0.94834 1.01557 1.02160 1.20537 0.96037 0.92852 1.02829 1.19855 0.99418 0.96072 0.93270 1.20934 1.00396 0.94765 0.97429 1.20948 0.98794 0.94914 0.97369 1.19266 0.98897 0.94823 0.93554 1.20707 0.93292 0.95494 1.04968 1.20440 0.89290 0.84177 0.76572 1.90731 1.70189 1.31164 1.48867 1.46319 1.08256 1.07907 1.74914 1.21032 0.77227 0.99232 0.97089 0.90161 1.22375 0.99161 1.00575 0.95832 1.20873 0.90322 0.90204 0.96587 1.44104 1.48175 1.24641 1.14607 1.19233 1.09758 1.17567 0.91494 0.91598 1.25040 0.97224 1.00852 0.96599 1.70036 1.37742 1.39378 1.07533 0.86239 0.79208 0.82897 0.78534 1.20273 1.21588 1.21730 1.20807 0.85692 1.01951 0.86145 1.22158 1.01300 0.95646 0.95203 0.91478 1.21719 0.99236 1.01700 0.96968 1.20953 0.98786 0.94904 0.97374 1.20937 1.00396 0.94744 0.97432 0.92596 0.92519 0.92605 0.91104 0.91109 0.86309 0.86306 0.88237 0.88216 0.77178 0.92761 0.92393 0.96242 0.92604 0.93662 0.96179 0.88994 0.93066 0.92653 0.93880 0.86295 0.86303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 9.89 37.16 0.37 -0.57 16 2 C -0.09 -0.65 6.06 -27.88 -0.17 -0.82 16 3 C -0.09 -0.87 5.13 -104.62 -0.54 -1.41 16 4 C -0.12 -1.22 9.70 -39.59 -0.38 -1.61 16 5 C -0.10 -1.14 9.70 -39.58 -0.38 -1.53 16 6 C -0.06 -0.75 4.37 -104.62 -0.46 -1.20 16 7 C -0.10 -1.04 5.83 -29.04 -0.17 -1.21 16 8 C 0.51 7.20 7.79 -10.98 -0.09 7.11 16 9 O -0.53 -9.95 15.70 5.55 0.09 -9.87 16 10 N -0.72 -9.80 4.36 -53.76 -0.23 -10.03 16 11 C 0.16 2.73 1.88 -67.89 -0.13 2.60 16 12 H 0.08 1.60 7.58 -51.93 -0.39 1.21 16 13 C -0.14 -2.56 5.65 -26.61 -0.15 -2.71 16 14 C 0.15 3.20 6.51 -3.71 -0.02 3.18 16 15 N -0.59 -14.82 2.99 -172.32 -0.52 -15.33 16 16 C -0.25 -6.85 9.59 -15.06 -0.14 -6.99 16 17 H 0.07 1.78 7.89 -52.49 -0.41 1.36 16 18 C 0.00 0.04 4.91 -17.43 -0.09 -0.05 16 19 N -0.90 -25.99 11.19 55.49 0.62 -25.37 16 20 Si 0.90 21.52 29.59 -169.99 -5.03 16.49 16 21 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 22 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 23 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 24 C 0.18 4.21 4.59 -3.71 -0.02 4.19 16 25 C -0.12 -2.20 2.46 -90.50 -0.22 -2.42 16 26 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 27 C -0.14 -2.11 9.03 37.15 0.34 -1.78 16 28 C -0.10 -1.15 9.70 -39.58 -0.38 -1.53 16 29 C -0.12 -1.22 9.70 -39.58 -0.38 -1.61 16 30 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.05 0.36 8.14 -51.92 -0.42 -0.06 16 33 H 0.07 0.51 8.09 -51.93 -0.42 0.09 16 34 H 0.07 0.51 8.09 -51.93 -0.42 0.09 16 35 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 36 H 0.12 1.17 8.06 -52.49 -0.42 0.74 16 37 H 0.10 0.77 8.09 -51.93 -0.42 0.35 16 38 H 0.10 0.78 8.08 -51.93 -0.42 0.36 16 39 H 0.39 4.22 8.31 -40.82 -0.34 3.88 16 40 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 41 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 42 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.06 1.19 7.94 -51.93 -0.41 0.77 16 44 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 45 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 46 H 0.09 2.39 6.04 -51.93 -0.31 2.08 16 47 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 48 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 49 H 0.04 0.54 7.36 -51.93 -0.38 0.16 16 50 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 51 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 LS Contribution 407.07 15.07 6.13 6.13 Total: -1.00 -32.21 407.07 -10.95 -43.16 By element: Atomic # 1 Polarization: 12.16 SS G_CDS: -8.99 Total: 3.18 kcal Atomic # 6 Polarization: -5.34 SS G_CDS: -3.02 Total: -8.36 kcal Atomic # 7 Polarization: -50.61 SS G_CDS: -0.13 Total: -50.74 kcal Atomic # 8 Polarization: -9.95 SS G_CDS: 0.09 Total: -9.87 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.03 Total: 16.49 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -32.21 -10.95 -43.16 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000943209318.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.229 kcal (2) G-P(sol) polarization free energy of solvation -32.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.163 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds