Wall clock time and date at job start Tue Mar 31 2020 16:38:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50700 * 109.47158 * 2 1 4 4 C 1.38232 * 120.00085 * 90.00468 * 3 2 1 5 5 C 1.38230 * 120.00111 * 179.97438 * 4 3 2 6 6 C 1.38239 * 120.00273 * 359.97211 * 5 4 3 7 7 C 1.50692 * 120.00303 * 180.02562 * 6 5 4 8 8 C 1.50697 * 109.47397 * 90.00059 * 7 6 5 9 9 O 1.21288 * 119.99810 * 0.02562 * 8 7 6 10 10 N 1.34781 * 120.00318 * 179.97438 * 8 7 6 11 11 C 1.46505 * 119.99852 * 179.97438 * 10 8 7 12 12 H 1.08999 * 109.46127 * 325.02793 * 11 10 8 13 13 C 1.53038 * 109.45669 * 85.00238 * 11 10 8 14 14 C 1.53196 * 109.30843 * 181.38113 * 13 11 10 15 15 N 1.46921 * 108.77725 * 305.36794 * 14 13 11 16 16 C 1.36942 * 120.62755 * 233.62956 * 15 14 13 17 17 H 1.08001 * 119.99891 * 27.67296 * 16 15 14 18 18 C 1.38814 * 119.99652 * 207.66851 * 16 15 14 19 19 N 1.31612 * 120.00369 * 17.36555 * 18 16 15 20 20 Si 1.86800 * 119.99830 * 197.36288 * 18 16 15 21 21 H 1.48506 * 109.47193 * 0.02562 * 20 18 16 22 22 H 1.48499 * 109.47322 * 120.00260 * 20 18 16 23 23 H 1.48503 * 109.47216 * 240.00476 * 20 18 16 24 24 C 1.46923 * 118.74131 * 53.60843 * 15 14 13 25 25 C 1.53042 * 109.45639 * 205.07156 * 11 10 8 26 26 H 1.08999 * 109.49566 * 298.56370 * 25 11 10 27 27 C 1.52992 * 109.49838 * 58.66254 * 25 11 10 28 28 C 1.38246 * 119.99480 * 0.28018 * 6 5 4 29 29 C 1.38228 * 119.99847 * 359.53271 * 28 6 5 30 30 H 1.08999 * 109.47605 * 59.99674 * 1 2 3 31 31 H 1.08997 * 109.47562 * 180.02562 * 1 2 3 32 32 H 1.09009 * 109.47087 * 299.99893 * 1 2 3 33 33 H 1.08999 * 109.47133 * 239.99986 * 2 1 3 34 34 H 1.09005 * 109.47370 * 119.99929 * 2 1 3 35 35 H 1.07998 * 119.99887 * 359.97438 * 4 3 2 36 36 H 1.08001 * 120.00375 * 180.02562 * 5 4 3 37 37 H 1.09001 * 109.47122 * 329.99720 * 7 6 5 38 38 H 1.09005 * 109.47126 * 210.00167 * 7 6 5 39 39 H 0.96996 * 119.99563 * 0.02562 * 10 8 7 40 40 H 1.08996 * 109.50157 * 301.33363 * 13 11 10 41 41 H 1.08997 * 109.49894 * 61.40478 * 13 11 10 42 42 H 1.09006 * 109.58601 * 65.15840 * 14 13 11 43 43 H 1.09002 * 109.58464 * 185.43452 * 14 13 11 44 44 H 0.96999 * 120.00552 * 179.97438 * 19 18 16 45 45 H 1.09000 * 109.58781 * 66.17815 * 24 15 14 46 46 H 1.09000 * 109.58467 * 186.60646 * 24 15 14 47 47 H 1.09006 * 109.47163 * 60.00157 * 27 25 11 48 48 H 1.09004 * 109.47054 * 179.97438 * 27 25 11 49 49 H 1.08999 * 109.47323 * 299.99869 * 27 25 11 50 50 H 1.08001 * 119.99536 * 179.73156 * 28 6 5 51 51 H 1.08000 * 119.99759 * 180.23034 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2628 2.0724 1.1971 5 6 2.7241 3.3755 1.1971 6 6 2.9555 4.0269 0.0000 7 6 3.4589 5.4472 0.0000 8 6 4.9659 5.4461 0.0005 9 8 5.5715 4.3953 0.0004 10 7 5.6407 6.6128 0.0001 11 6 7.1058 6.6116 0.0012 12 1 7.4678 5.7697 0.5912 13 6 7.6165 6.4844 -1.4358 14 6 9.1480 6.4487 -1.4278 15 7 9.6449 7.6325 -0.7133 16 6 10.5539 8.4714 -1.3008 17 1 10.5874 8.5633 -2.3764 18 6 11.4321 9.2038 -0.5138 19 7 11.6373 8.8585 0.7395 20 14 12.3227 10.6796 -1.2337 21 1 11.9208 10.8567 -2.6524 22 1 11.9657 11.8977 -0.4629 23 1 13.7892 10.4581 -1.1582 24 6 9.1476 7.8993 0.6432 25 6 7.6161 7.9188 0.6120 26 1 7.2752 8.7599 0.0084 27 6 7.0780 8.0608 2.0372 28 6 2.7200 3.3769 -1.1972 29 6 2.2624 2.0726 -1.1972 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3634 0.5139 0.8901 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 2.0825 1.5634 2.1324 36 1 2.9046 3.8845 2.1324 37 1 3.0956 5.9615 0.8897 38 1 3.0963 5.9613 -0.8902 39 1 5.1563 7.4532 -0.0002 40 1 7.2335 5.5647 -1.8780 41 1 7.2752 7.3387 -2.0202 42 1 9.4899 5.5460 -0.9213 43 1 9.5190 6.4554 -2.4527 44 1 12.2512 9.3700 1.2893 45 1 9.4894 7.1150 1.3186 46 1 9.5184 8.8657 0.9848 47 1 7.4207 7.2200 2.6404 48 1 7.4422 8.9917 2.4719 49 1 5.9883 8.0717 2.0147 50 1 2.8967 3.8873 -2.1325 51 1 2.0820 1.5636 -2.1325 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000943209318.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:38:14 Heat of formation + Delta-G solvation = -31.998719 kcal Electronic energy + Delta-G solvation = -28103.426859 eV Core-core repulsion = 24387.300613 eV Total energy + Delta-G solvation = -3716.126246 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.23797 -40.20586 -39.04475 -36.14846 -35.45822 -33.97891 -33.49871 -32.26583 -31.77749 -31.03879 -28.28670 -27.55722 -26.61304 -24.44813 -23.61759 -23.58895 -22.51262 -21.69772 -21.26237 -20.68045 -18.85444 -17.83586 -17.51216 -16.90410 -16.79595 -16.58089 -15.95501 -15.82583 -15.56687 -15.44869 -14.98770 -14.66405 -14.62209 -14.56906 -14.48934 -14.22297 -14.14213 -13.70358 -13.53896 -13.23696 -12.96121 -12.93876 -12.87163 -12.82084 -12.56861 -12.51700 -12.43773 -12.04860 -12.00050 -11.83959 -11.74084 -11.68771 -11.63547 -11.53662 -11.25318 -10.81390 -10.57637 -9.93087 -9.76309 -9.38150 -8.72323 -7.88707 -5.34369 0.42895 0.56147 1.46611 1.48497 1.59363 1.75101 2.27645 2.50773 2.93433 3.26473 3.62199 3.72696 3.78676 3.91416 3.96501 4.03124 4.15943 4.18281 4.21676 4.23309 4.34907 4.50583 4.52237 4.56895 4.60938 4.64564 4.70313 4.74531 4.76241 4.80134 4.85232 4.93846 5.00582 5.06890 5.08304 5.09509 5.16341 5.21904 5.25684 5.30157 5.34617 5.39362 5.50250 5.54713 5.61459 5.65514 5.71549 5.73166 5.76363 6.17085 6.37590 6.69853 7.13117 7.39348 7.82544 8.35660 9.18259 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.031596 B = 0.002120 C = 0.002072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 885.974681 B =13203.352070 C =13508.011739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.085 4.085 3 C -0.093 4.093 4 C -0.130 4.130 5 C -0.117 4.117 6 C -0.084 4.084 7 C -0.093 4.093 8 C 0.510 3.490 9 O -0.583 6.583 10 N -0.710 5.710 11 C 0.171 3.829 12 H 0.050 0.950 13 C -0.124 4.124 14 C 0.143 3.857 15 N -0.609 5.609 16 C -0.263 4.263 17 H 0.068 0.932 18 C -0.050 4.050 19 N -0.935 5.935 20 Si 0.969 3.031 21 H -0.266 1.266 22 H -0.287 1.287 23 H -0.294 1.294 24 C 0.187 3.813 25 C -0.107 4.107 26 H 0.075 0.925 27 C -0.132 4.132 28 C -0.117 4.117 29 C -0.130 4.130 30 H 0.053 0.947 31 H 0.069 0.931 32 H 0.053 0.947 33 H 0.075 0.925 34 H 0.075 0.925 35 H 0.133 0.867 36 H 0.128 0.872 37 H 0.129 0.871 38 H 0.128 0.872 39 H 0.414 0.586 40 H 0.057 0.943 41 H 0.068 0.932 42 H 0.003 0.997 43 H 0.057 0.943 44 H 0.251 0.749 45 H -0.011 1.011 46 H 0.063 0.937 47 H 0.039 0.961 48 H 0.055 0.945 49 H 0.079 0.921 50 H 0.128 0.872 51 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.959 -9.235 -0.256 27.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.122 4.122 3 C -0.093 4.093 4 C -0.148 4.148 5 C -0.135 4.135 6 C -0.084 4.084 7 C -0.132 4.132 8 C 0.298 3.702 9 O -0.462 6.462 10 N -0.361 5.361 11 C 0.066 3.934 12 H 0.069 0.931 13 C -0.164 4.164 14 C 0.017 3.983 15 N -0.332 5.332 16 C -0.393 4.393 17 H 0.085 0.915 18 C -0.246 4.246 19 N -0.581 5.581 20 Si 0.797 3.203 21 H -0.190 1.190 22 H -0.213 1.213 23 H -0.222 1.222 24 C 0.061 3.939 25 C -0.128 4.128 26 H 0.094 0.906 27 C -0.189 4.189 28 C -0.135 4.135 29 C -0.148 4.148 30 H 0.072 0.928 31 H 0.088 0.912 32 H 0.072 0.928 33 H 0.093 0.907 34 H 0.093 0.907 35 H 0.151 0.849 36 H 0.146 0.854 37 H 0.147 0.853 38 H 0.146 0.854 39 H 0.251 0.749 40 H 0.076 0.924 41 H 0.087 0.913 42 H 0.020 0.980 43 H 0.075 0.925 44 H 0.060 0.940 45 H 0.007 0.993 46 H 0.081 0.919 47 H 0.059 0.941 48 H 0.074 0.926 49 H 0.098 0.902 50 H 0.146 0.854 51 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -25.424 -9.908 -0.167 27.286 hybrid contribution 1.162 0.923 -0.103 1.488 sum -24.261 -8.985 -0.269 25.873 Atomic orbital electron populations 1.21713 0.93814 1.02386 1.01984 1.20585 0.96865 0.91510 1.03281 1.20180 0.98879 0.97148 0.93118 1.21217 1.00374 0.94895 0.98310 1.21213 0.99001 0.95439 0.97879 1.19507 0.99413 0.95788 0.93700 1.20723 0.89435 0.95365 1.07724 1.21183 0.90982 0.83130 0.74887 1.90721 1.71548 1.32949 1.50988 1.46032 1.06377 1.09096 1.74632 1.20570 0.79703 0.97505 0.95664 0.93134 1.22168 0.96268 1.01121 0.96842 1.20964 0.92827 0.88488 0.96004 1.44373 1.48327 1.25422 1.15120 1.19554 1.10087 1.17852 0.91789 0.91479 1.25816 0.98314 1.03410 0.97019 1.70196 1.38615 1.40483 1.08818 0.85190 0.77462 0.79378 0.78288 1.19047 1.21348 1.22164 1.20624 0.89365 0.99060 0.84870 1.21885 0.97179 0.96287 0.97431 0.90618 1.21672 1.01389 1.01275 0.94608 1.21214 0.99018 0.95430 0.97872 1.21218 1.00384 0.94873 0.98311 0.92769 0.91192 0.92774 0.90661 0.90664 0.84913 0.85396 0.85316 0.85407 0.74881 0.92388 0.91344 0.97951 0.92455 0.94020 0.99334 0.91880 0.94143 0.92597 0.90221 0.85418 0.84915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.60 9.89 71.98 0.71 -0.89 16 2 C -0.09 -1.19 6.06 29.85 0.18 -1.01 16 3 C -0.09 -1.78 5.13 -19.87 -0.10 -1.89 16 4 C -0.13 -2.58 9.70 22.27 0.22 -2.36 16 5 C -0.12 -2.47 9.70 22.27 0.22 -2.25 16 6 C -0.08 -1.78 4.37 -19.86 -0.09 -1.86 16 7 C -0.09 -1.56 5.83 29.10 0.17 -1.39 16 8 C 0.51 13.32 7.79 87.66 0.68 14.00 16 9 O -0.58 -21.42 15.70 -3.05 -0.05 -21.47 16 10 N -0.71 -17.37 4.36 -442.39 -1.93 -19.30 16 11 C 0.17 5.77 1.88 45.02 0.08 5.85 16 12 H 0.05 2.05 7.58 -2.39 -0.02 2.03 16 13 C -0.12 -4.47 5.65 30.67 0.17 -4.30 16 14 C 0.14 6.36 6.51 86.36 0.56 6.92 16 15 N -0.61 -31.13 2.99 -699.09 -2.09 -33.22 16 16 C -0.26 -14.52 9.59 84.03 0.81 -13.72 16 17 H 0.07 3.62 7.89 -2.91 -0.02 3.60 16 18 C -0.05 -2.80 4.91 84.86 0.42 -2.39 16 19 N -0.94 -55.43 11.19 21.65 0.24 -55.19 16 20 Si 0.97 44.63 29.59 68.60 2.03 46.66 16 21 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 22 H -0.29 -13.02 7.11 99.48 0.71 -12.32 16 23 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 24 C 0.19 8.99 4.59 86.36 0.40 9.39 16 25 C -0.11 -3.78 2.46 -10.72 -0.03 -3.81 16 26 H 0.08 2.58 8.14 -2.39 -0.02 2.56 16 27 C -0.13 -3.81 9.03 71.98 0.65 -3.16 16 28 C -0.12 -2.48 9.70 22.27 0.22 -2.26 16 29 C -0.13 -2.58 9.70 22.27 0.22 -2.37 16 30 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 32 H 0.05 0.63 8.14 -2.38 -0.02 0.61 16 33 H 0.07 0.98 8.09 -2.39 -0.02 0.96 16 34 H 0.07 0.98 8.09 -2.38 -0.02 0.96 16 35 H 0.13 2.11 8.06 -2.91 -0.02 2.09 16 36 H 0.13 2.32 8.06 -2.91 -0.02 2.29 16 37 H 0.13 1.43 8.09 -2.39 -0.02 1.41 16 38 H 0.13 1.45 8.08 -2.38 -0.02 1.43 16 39 H 0.41 7.16 8.31 -92.71 -0.77 6.39 16 40 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 41 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 42 H 0.00 0.12 8.14 -2.38 -0.02 0.10 16 43 H 0.06 2.47 7.94 -2.39 -0.02 2.45 16 44 H 0.25 14.31 8.31 -92.71 -0.77 13.54 16 45 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16 46 H 0.06 3.39 6.04 -2.39 -0.01 3.38 16 47 H 0.04 1.25 8.14 -2.38 -0.02 1.24 16 48 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 49 H 0.08 1.73 7.36 -2.39 -0.02 1.71 16 50 H 0.13 2.33 8.06 -2.91 -0.02 2.30 16 51 H 0.13 2.12 8.06 -2.91 -0.02 2.09 16 Total: -1.00 -72.36 407.07 3.81 -68.56 By element: Atomic # 1 Polarization: 21.33 SS G_CDS: 0.12 Total: 21.45 kcal Atomic # 6 Polarization: -12.98 SS G_CDS: 5.48 Total: -7.49 kcal Atomic # 7 Polarization: -103.93 SS G_CDS: -3.78 Total: -107.71 kcal Atomic # 8 Polarization: -21.42 SS G_CDS: -0.05 Total: -21.47 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.66 kcal Total: -72.36 3.81 -68.56 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000943209318.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.557 kcal (2) G-P(sol) polarization free energy of solvation -72.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.556 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds