Wall clock time and date at job start Tue Mar 31 2020 16:38:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50698 * 109.47011 * 2 1 4 4 C 1.38254 * 120.00024 * 264.97623 * 3 2 1 5 5 C 1.38215 * 119.99808 * 179.97438 * 4 3 2 6 6 C 1.38258 * 120.00388 * 0.02562 * 5 4 3 7 7 C 1.38216 * 119.99631 * 359.81202 * 6 5 4 8 8 C 1.38216 * 119.99848 * 85.00322 * 3 2 1 9 9 C 1.50700 * 119.99657 * 359.97438 * 8 3 2 10 10 C 1.50708 * 109.47137 * 85.00334 * 9 8 3 11 11 O 1.21280 * 119.99754 * 359.97438 * 10 9 8 12 12 N 1.34777 * 119.99924 * 179.97438 * 10 9 8 13 13 C 1.46492 * 119.99717 * 179.97438 * 12 10 9 14 14 H 1.09003 * 109.46169 * 35.03189 * 13 12 10 15 15 C 1.53036 * 109.45318 * 275.06293 * 13 12 10 16 16 C 1.53624 * 109.24589 * 178.49791 * 15 13 12 17 17 N 1.46931 * 108.54169 * 54.85612 * 16 15 13 18 18 C 1.36940 * 120.62705 * 126.36561 * 17 16 15 19 19 H 1.08002 * 119.99955 * 208.85025 * 18 17 16 20 20 C 1.38815 * 119.99799 * 29.13255 * 18 17 16 21 21 N 1.31614 * 120.00064 * 14.76938 * 20 18 17 22 22 Si 1.86797 * 119.99562 * 194.76735 * 20 18 17 23 23 H 1.48499 * 109.47595 * 0.02562 * 22 20 18 24 24 H 1.48507 * 109.46779 * 120.00262 * 22 20 18 25 25 H 1.48495 * 109.47384 * 239.99559 * 22 20 18 26 26 C 1.46921 * 118.73719 * 306.09636 * 17 16 15 27 27 H 1.08997 * 109.58500 * 293.92595 * 26 17 16 28 28 C 1.53004 * 109.58196 * 173.64501 * 26 17 16 29 29 C 1.53047 * 109.45747 * 155.00209 * 13 12 10 30 30 H 1.09000 * 109.47286 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47152 * 299.99675 * 1 2 3 32 32 H 1.08995 * 109.47193 * 59.99892 * 1 2 3 33 33 H 1.09004 * 109.47152 * 240.00325 * 2 1 3 34 34 H 1.08999 * 109.47124 * 120.00624 * 2 1 3 35 35 H 1.07998 * 120.00352 * 0.02562 * 4 3 2 36 36 H 1.08001 * 119.99807 * 180.02562 * 5 4 3 37 37 H 1.07990 * 120.00363 * 180.02562 * 6 5 4 38 38 H 1.08001 * 120.00463 * 180.23325 * 7 6 5 39 39 H 1.08995 * 109.47666 * 325.00079 * 9 8 3 40 40 H 1.09001 * 109.47066 * 205.00038 * 9 8 3 41 41 H 0.96998 * 119.99993 * 0.02562 * 12 10 9 42 42 H 1.08999 * 109.49914 * 298.57341 * 15 13 12 43 43 H 1.09001 * 109.49469 * 58.67407 * 15 13 12 44 44 H 1.08996 * 109.73965 * 295.11988 * 16 15 13 45 45 H 1.08999 * 109.66525 * 174.55078 * 16 15 13 46 46 H 0.97003 * 119.99912 * 179.97438 * 21 20 18 47 47 H 1.08996 * 109.47275 * 60.00267 * 28 26 17 48 48 H 1.09008 * 109.46820 * 179.97438 * 28 26 17 49 49 H 1.09001 * 109.47306 * 299.99778 * 28 26 17 50 50 H 1.09001 * 109.49668 * 61.42404 * 29 13 12 51 51 H 1.08998 * 109.49656 * 301.32152 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3616 2.0376 -1.1927 5 6 2.8218 3.3409 -1.1927 6 6 2.9533 4.0276 0.0000 7 6 2.6210 3.4121 1.1921 8 6 2.1644 2.1071 1.1925 9 6 1.8055 1.4347 2.4925 10 6 2.9844 0.6371 2.9878 11 8 4.0144 0.6165 2.3478 12 7 2.8941 -0.0531 4.1419 13 6 4.0399 -0.8287 4.6230 14 1 4.9633 -0.3093 4.3668 15 6 4.0326 -2.2103 3.9649 16 6 5.2564 -3.0058 4.4438 17 7 5.2475 -3.0375 5.9128 18 6 5.3204 -4.2281 6.5854 19 1 4.8673 -4.3259 7.5608 20 6 5.9819 -5.3075 6.0159 21 7 6.7787 -5.1217 4.9850 22 14 5.7410 -7.0237 6.7130 23 1 4.8022 -6.9642 7.8620 24 1 5.1806 -7.9107 5.6619 25 1 7.0483 -7.5610 7.1685 26 6 5.1650 -1.7671 6.6462 27 1 6.0714 -1.1866 6.4747 28 6 5.0112 -2.0478 8.1424 29 6 3.9477 -0.9851 6.1427 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5139 0.8899 35 1 2.2585 1.5014 -2.1245 36 1 3.0786 3.8229 -2.1245 37 1 3.3125 5.0461 0.0000 38 1 2.7201 3.9497 2.1235 39 1 0.9568 0.7690 2.3352 40 1 1.5419 2.1908 3.2320 41 1 2.0701 -0.0368 4.6535 42 1 3.1207 -2.7399 4.2408 43 1 4.0747 -2.0975 2.8816 44 1 6.1690 -2.5231 4.0943 45 1 5.2072 -4.0233 4.0561 46 1 7.2412 -5.8760 4.5873 47 1 5.8721 -2.6150 8.4961 48 1 4.9505 -1.1042 8.6848 49 1 4.1017 -2.6241 8.3124 50 1 3.0366 -1.5263 6.3981 51 1 3.9294 -0.0003 6.6093 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000947442142.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:38:30 Heat of formation + Delta-G solvation = -9.586089 kcal Electronic energy + Delta-G solvation = -28811.802972 eV Core-core repulsion = 25096.648611 eV Total energy + Delta-G solvation = -3715.154361 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.30305 -39.05627 -37.53535 -34.55475 -34.38147 -32.74073 -32.35390 -31.23395 -29.72759 -29.46551 -27.58873 -26.29487 -24.73376 -23.95363 -22.47726 -21.88403 -21.17087 -20.43025 -19.96373 -19.15903 -17.01419 -16.54875 -16.27112 -16.15782 -15.73309 -15.14866 -14.92544 -14.50796 -14.03162 -13.91794 -13.80613 -13.64808 -13.49837 -13.30839 -13.13804 -13.03202 -12.82505 -12.68680 -12.20779 -11.98762 -11.88822 -11.58988 -11.41340 -11.20591 -11.08045 -10.94230 -10.89337 -10.86439 -10.77583 -10.64577 -10.28322 -10.11790 -10.03219 -9.76952 -9.71286 -9.34541 -8.84431 -8.66764 -8.62807 -8.40701 -6.62948 -5.75595 -3.19861 1.27386 1.35001 2.84766 3.35143 3.38720 3.45311 3.46984 3.80038 4.49865 4.52481 4.64478 4.80312 4.86052 5.01455 5.03665 5.11407 5.23143 5.26908 5.31126 5.39151 5.40125 5.45337 5.47126 5.53542 5.62182 5.76630 5.79675 5.81139 5.92201 6.01257 6.02984 6.13332 6.16662 6.28177 6.32298 6.40741 6.43427 6.43770 6.45487 6.53351 6.59789 6.66925 6.81179 6.92712 6.95434 7.04676 7.10685 7.40945 7.71195 7.77319 7.83730 8.47058 8.48969 9.23944 9.87514 10.44588 11.32826 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.018596 B = 0.002680 C = 0.002533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1505.301114 B =10445.793266 C =11052.287817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.090 4.090 3 C -0.062 4.062 4 C -0.119 4.119 5 C -0.120 4.120 6 C -0.126 4.126 7 C -0.106 4.106 8 C -0.060 4.060 9 C -0.108 4.108 10 C 0.510 3.490 11 O -0.529 6.529 12 N -0.727 5.727 13 C 0.151 3.849 14 H 0.080 0.920 15 C -0.146 4.146 16 C 0.175 3.825 17 N -0.588 5.588 18 C -0.250 4.250 19 H 0.071 0.929 20 C 0.001 3.999 21 N -0.902 5.902 22 Si 0.900 3.100 23 H -0.278 1.278 24 H -0.290 1.290 25 H -0.291 1.291 26 C 0.171 3.829 27 H 0.026 0.974 28 C -0.135 4.135 29 C -0.133 4.133 30 H 0.059 0.941 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.072 0.928 34 H 0.074 0.926 35 H 0.119 0.881 36 H 0.119 0.881 37 H 0.119 0.881 38 H 0.119 0.881 39 H 0.102 0.898 40 H 0.098 0.902 41 H 0.394 0.606 42 H 0.054 0.946 43 H 0.051 0.949 44 H 0.020 0.980 45 H 0.090 0.910 46 H 0.253 0.747 47 H 0.062 0.938 48 H 0.038 0.962 49 H 0.053 0.947 50 H 0.063 0.937 51 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.882 16.089 -7.335 22.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.128 4.128 3 C -0.062 4.062 4 C -0.137 4.137 5 C -0.138 4.138 6 C -0.144 4.144 7 C -0.124 4.124 8 C -0.060 4.060 9 C -0.148 4.148 10 C 0.295 3.705 11 O -0.405 6.405 12 N -0.378 5.378 13 C 0.048 3.952 14 H 0.098 0.902 15 C -0.186 4.186 16 C 0.049 3.951 17 N -0.311 5.311 18 C -0.379 4.379 19 H 0.088 0.912 20 C -0.197 4.197 21 N -0.547 5.547 22 Si 0.730 3.270 23 H -0.203 1.203 24 H -0.217 1.217 25 H -0.218 1.218 26 C 0.063 3.937 27 H 0.044 0.956 28 C -0.193 4.193 29 C -0.173 4.173 30 H 0.078 0.922 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.091 0.909 34 H 0.092 0.908 35 H 0.137 0.863 36 H 0.137 0.863 37 H 0.137 0.863 38 H 0.137 0.863 39 H 0.120 0.880 40 H 0.116 0.884 41 H 0.227 0.773 42 H 0.073 0.927 43 H 0.070 0.930 44 H 0.038 0.962 45 H 0.108 0.892 46 H 0.063 0.937 47 H 0.081 0.919 48 H 0.057 0.943 49 H 0.072 0.928 50 H 0.082 0.918 51 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -13.017 15.932 -7.863 22.025 hybrid contribution -0.372 -0.865 0.487 1.060 sum -13.389 15.067 -7.376 21.463 Atomic orbital electron populations 1.21767 0.94757 1.01859 1.01962 1.20582 0.95859 0.92853 1.03459 1.19678 0.98204 0.95698 0.92616 1.20978 1.00155 0.95174 0.97363 1.21085 0.99890 0.94847 0.97974 1.21040 1.00841 0.99931 0.92584 1.20958 0.98817 0.94496 0.98111 1.19118 0.99834 0.93907 0.93148 1.20780 0.98020 1.00114 0.95908 1.20408 0.89294 0.79659 0.81096 1.90743 1.30917 1.62926 1.55894 1.46341 1.17358 1.50123 1.23942 1.21018 0.88322 0.91969 0.93905 0.90231 1.22629 1.02034 0.95056 0.98891 1.20847 0.91350 0.99684 0.83260 1.44197 1.85457 1.00524 1.00964 1.19221 1.28081 0.87858 1.02781 0.91173 1.25109 0.96672 0.99013 0.98924 1.70024 1.29570 1.29700 1.25411 0.86257 0.77400 0.84952 0.78360 1.20304 1.21659 1.21782 1.20358 0.93333 0.88393 0.91600 0.95631 1.21796 1.02462 0.99532 0.95501 1.22368 1.01557 0.99684 0.93675 0.92208 0.92603 0.92574 0.90925 0.90775 0.86258 0.86329 0.86288 0.86333 0.87980 0.88370 0.77315 0.92743 0.93036 0.96221 0.89159 0.93712 0.91870 0.94334 0.92793 0.91841 0.92783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 9.72 37.16 0.36 -0.88 16 2 C -0.09 -0.98 5.38 -27.88 -0.15 -1.13 16 3 C -0.06 -0.74 5.13 -104.62 -0.54 -1.28 16 4 C -0.12 -1.31 9.68 -39.58 -0.38 -1.70 16 5 C -0.12 -1.24 10.05 -39.58 -0.40 -1.64 16 6 C -0.13 -1.32 10.05 -39.58 -0.40 -1.72 16 7 C -0.11 -1.20 9.68 -39.58 -0.38 -1.58 16 8 C -0.06 -0.71 4.37 -104.62 -0.46 -1.17 16 9 C -0.11 -1.13 5.16 -29.03 -0.15 -1.28 16 10 C 0.51 7.38 6.99 -10.98 -0.08 7.30 16 11 O -0.53 -10.12 15.70 5.56 0.09 -10.03 16 12 N -0.73 -9.92 5.08 -53.77 -0.27 -10.20 16 13 C 0.15 2.62 2.41 -67.89 -0.16 2.46 16 14 H 0.08 1.59 7.58 -51.93 -0.39 1.20 16 15 C -0.15 -2.90 5.67 -26.39 -0.15 -3.05 16 16 C 0.17 4.25 5.31 -3.48 -0.02 4.23 16 17 N -0.59 -14.39 2.98 -164.51 -0.49 -14.88 16 18 C -0.25 -6.63 8.60 -15.06 -0.13 -6.76 16 19 H 0.07 1.81 6.21 -52.49 -0.33 1.49 16 20 C 0.00 0.04 4.96 -17.43 -0.09 -0.05 16 21 N -0.90 -26.24 11.13 55.49 0.62 -25.63 16 22 Si 0.90 21.54 29.58 -169.99 -5.03 16.52 16 23 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 24 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 25 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 26 C 0.17 3.47 3.49 -67.60 -0.24 3.23 16 27 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 28 C -0.14 -2.48 7.94 37.16 0.30 -2.18 16 29 C -0.13 -2.20 4.84 -26.61 -0.13 -2.33 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.05 0.44 6.80 -51.93 -0.35 0.09 16 32 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.07 0.76 8.05 -51.93 -0.42 0.34 16 34 H 0.07 0.93 6.42 -51.93 -0.33 0.60 16 35 H 0.12 1.10 8.06 -52.49 -0.42 0.67 16 36 H 0.12 0.95 8.06 -52.49 -0.42 0.52 16 37 H 0.12 0.98 8.06 -52.49 -0.42 0.55 16 38 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 39 H 0.10 0.89 5.62 -51.93 -0.29 0.60 16 40 H 0.10 0.78 8.05 -51.93 -0.42 0.36 16 41 H 0.39 4.11 8.60 -40.82 -0.35 3.76 16 42 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 43 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 44 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 45 H 0.09 2.45 6.06 -51.93 -0.31 2.14 16 46 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 47 H 0.06 1.26 7.62 -51.93 -0.40 0.86 16 48 H 0.04 0.58 8.14 -51.92 -0.42 0.16 16 49 H 0.05 0.99 7.45 -51.93 -0.39 0.60 16 50 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 51 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 LS Contribution 397.51 15.07 5.99 5.99 Total: -1.00 -32.19 397.51 -10.90 -43.09 By element: Atomic # 1 Polarization: 13.28 SS G_CDS: -8.61 Total: 4.66 kcal Atomic # 6 Polarization: -6.34 SS G_CDS: -3.19 Total: -9.53 kcal Atomic # 7 Polarization: -50.55 SS G_CDS: -0.15 Total: -50.70 kcal Atomic # 8 Polarization: -10.12 SS G_CDS: 0.09 Total: -10.03 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.03 Total: 16.52 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -32.19 -10.90 -43.09 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947442142.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.500 kcal (2) G-P(sol) polarization free energy of solvation -32.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds