Wall clock time and date at job start Tue Mar 31 2020 16:38:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50698 * 109.47011 * 2 1 4 4 C 1.38254 * 120.00024 * 264.97623 * 3 2 1 5 5 C 1.38215 * 119.99808 * 179.97438 * 4 3 2 6 6 C 1.38258 * 120.00388 * 0.02562 * 5 4 3 7 7 C 1.38216 * 119.99631 * 359.81202 * 6 5 4 8 8 C 1.38216 * 119.99848 * 85.00322 * 3 2 1 9 9 C 1.50700 * 119.99657 * 359.97438 * 8 3 2 10 10 C 1.50708 * 109.47137 * 85.00334 * 9 8 3 11 11 O 1.21280 * 119.99754 * 359.97438 * 10 9 8 12 12 N 1.34777 * 119.99924 * 179.97438 * 10 9 8 13 13 C 1.46492 * 119.99717 * 179.97438 * 12 10 9 14 14 H 1.09003 * 109.46169 * 35.03189 * 13 12 10 15 15 C 1.53036 * 109.45318 * 275.06293 * 13 12 10 16 16 C 1.53624 * 109.24589 * 178.49791 * 15 13 12 17 17 N 1.46931 * 108.54169 * 54.85612 * 16 15 13 18 18 C 1.36940 * 120.62705 * 126.36561 * 17 16 15 19 19 H 1.08002 * 119.99955 * 208.85025 * 18 17 16 20 20 C 1.38815 * 119.99799 * 29.13255 * 18 17 16 21 21 N 1.31614 * 120.00064 * 14.76938 * 20 18 17 22 22 Si 1.86797 * 119.99562 * 194.76735 * 20 18 17 23 23 H 1.48499 * 109.47595 * 0.02562 * 22 20 18 24 24 H 1.48507 * 109.46779 * 120.00262 * 22 20 18 25 25 H 1.48495 * 109.47384 * 239.99559 * 22 20 18 26 26 C 1.46921 * 118.73719 * 306.09636 * 17 16 15 27 27 H 1.08997 * 109.58500 * 293.92595 * 26 17 16 28 28 C 1.53004 * 109.58196 * 173.64501 * 26 17 16 29 29 C 1.53047 * 109.45747 * 155.00209 * 13 12 10 30 30 H 1.09000 * 109.47286 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47152 * 299.99675 * 1 2 3 32 32 H 1.08995 * 109.47193 * 59.99892 * 1 2 3 33 33 H 1.09004 * 109.47152 * 240.00325 * 2 1 3 34 34 H 1.08999 * 109.47124 * 120.00624 * 2 1 3 35 35 H 1.07998 * 120.00352 * 0.02562 * 4 3 2 36 36 H 1.08001 * 119.99807 * 180.02562 * 5 4 3 37 37 H 1.07990 * 120.00363 * 180.02562 * 6 5 4 38 38 H 1.08001 * 120.00463 * 180.23325 * 7 6 5 39 39 H 1.08995 * 109.47666 * 325.00079 * 9 8 3 40 40 H 1.09001 * 109.47066 * 205.00038 * 9 8 3 41 41 H 0.96998 * 119.99993 * 0.02562 * 12 10 9 42 42 H 1.08999 * 109.49914 * 298.57341 * 15 13 12 43 43 H 1.09001 * 109.49469 * 58.67407 * 15 13 12 44 44 H 1.08996 * 109.73965 * 295.11988 * 16 15 13 45 45 H 1.08999 * 109.66525 * 174.55078 * 16 15 13 46 46 H 0.97003 * 119.99912 * 179.97438 * 21 20 18 47 47 H 1.08996 * 109.47275 * 60.00267 * 28 26 17 48 48 H 1.09008 * 109.46820 * 179.97438 * 28 26 17 49 49 H 1.09001 * 109.47306 * 299.99778 * 28 26 17 50 50 H 1.09001 * 109.49668 * 61.42404 * 29 13 12 51 51 H 1.08998 * 109.49656 * 301.32152 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3616 2.0376 -1.1927 5 6 2.8218 3.3409 -1.1927 6 6 2.9533 4.0276 0.0000 7 6 2.6210 3.4121 1.1921 8 6 2.1644 2.1071 1.1925 9 6 1.8055 1.4347 2.4925 10 6 2.9844 0.6371 2.9878 11 8 4.0144 0.6165 2.3478 12 7 2.8941 -0.0531 4.1419 13 6 4.0399 -0.8287 4.6230 14 1 4.9633 -0.3093 4.3668 15 6 4.0326 -2.2103 3.9649 16 6 5.2564 -3.0058 4.4438 17 7 5.2475 -3.0375 5.9128 18 6 5.3204 -4.2281 6.5854 19 1 4.8673 -4.3259 7.5608 20 6 5.9819 -5.3075 6.0159 21 7 6.7787 -5.1217 4.9850 22 14 5.7410 -7.0237 6.7130 23 1 4.8022 -6.9642 7.8620 24 1 5.1806 -7.9107 5.6619 25 1 7.0483 -7.5610 7.1685 26 6 5.1650 -1.7671 6.6462 27 1 6.0714 -1.1866 6.4747 28 6 5.0112 -2.0478 8.1424 29 6 3.9477 -0.9851 6.1427 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5139 0.8899 35 1 2.2585 1.5014 -2.1245 36 1 3.0786 3.8229 -2.1245 37 1 3.3125 5.0461 0.0000 38 1 2.7201 3.9497 2.1235 39 1 0.9568 0.7690 2.3352 40 1 1.5419 2.1908 3.2320 41 1 2.0701 -0.0368 4.6535 42 1 3.1207 -2.7399 4.2408 43 1 4.0747 -2.0975 2.8816 44 1 6.1690 -2.5231 4.0943 45 1 5.2072 -4.0233 4.0561 46 1 7.2412 -5.8760 4.5873 47 1 5.8721 -2.6150 8.4961 48 1 4.9505 -1.1042 8.6848 49 1 4.1017 -2.6241 8.3124 50 1 3.0366 -1.5263 6.3981 51 1 3.9294 -0.0003 6.6093 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000947442142.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:38:29 Heat of formation + Delta-G solvation = -27.696507 kcal Electronic energy + Delta-G solvation = -28812.588298 eV Core-core repulsion = 25096.648611 eV Total energy + Delta-G solvation = -3715.939688 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.34349 -40.17747 -39.05797 -36.06094 -35.19898 -34.22753 -33.60897 -32.80673 -31.30267 -30.35352 -28.65423 -27.78771 -26.57190 -24.74023 -23.88551 -23.17485 -22.39870 -21.52963 -21.27439 -20.69917 -18.43235 -17.89084 -17.49105 -17.16572 -17.00572 -16.65079 -15.91476 -15.77508 -15.63498 -15.48147 -15.05638 -14.80572 -14.61232 -14.56999 -14.34832 -14.33020 -13.92975 -13.83152 -13.33037 -13.02949 -12.94840 -12.83350 -12.72991 -12.66829 -12.64093 -12.59631 -12.35011 -12.15244 -12.04797 -11.83424 -11.72288 -11.69505 -11.54904 -11.48895 -11.29998 -10.80599 -10.56392 -9.95912 -9.66997 -9.45629 -8.64959 -7.83213 -5.30226 0.44862 0.53502 1.46658 1.48500 1.58613 1.72175 2.26191 2.52784 2.93025 3.33247 3.59390 3.68626 3.86236 3.87322 4.00456 4.07456 4.11767 4.13641 4.28601 4.30734 4.36810 4.40560 4.49321 4.54795 4.61610 4.65524 4.72020 4.73682 4.75897 4.77099 4.85665 4.96282 5.03236 5.07993 5.09165 5.12073 5.16202 5.19219 5.25044 5.39325 5.39493 5.49993 5.55967 5.60414 5.62226 5.64494 5.71634 5.73419 5.77176 6.16871 6.43345 6.67962 7.17228 7.38266 7.89095 8.42075 9.24104 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.018596 B = 0.002680 C = 0.002533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1505.301114 B =10445.793266 C =11052.287817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.089 4.089 3 C -0.080 4.080 4 C -0.135 4.135 5 C -0.126 4.126 6 C -0.136 4.136 7 C -0.119 4.119 8 C -0.080 4.080 9 C -0.097 4.097 10 C 0.510 3.490 11 O -0.581 6.581 12 N -0.712 5.712 13 C 0.163 3.837 14 H 0.050 0.950 15 C -0.128 4.128 16 C 0.183 3.817 17 N -0.603 5.603 18 C -0.246 4.246 19 H 0.082 0.918 20 C -0.059 4.059 21 N -0.943 5.943 22 Si 0.964 3.036 23 H -0.260 1.260 24 H -0.295 1.295 25 H -0.297 1.297 26 C 0.158 3.842 27 H 0.008 0.992 28 C -0.127 4.127 29 C -0.116 4.116 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.061 0.939 33 H 0.067 0.933 34 H 0.054 0.946 35 H 0.131 0.869 36 H 0.140 0.860 37 H 0.140 0.860 38 H 0.134 0.866 39 H 0.122 0.878 40 H 0.132 0.868 41 H 0.415 0.585 42 H 0.063 0.937 43 H 0.040 0.960 44 H -0.017 1.017 45 H 0.055 0.945 46 H 0.246 0.754 47 H 0.038 0.962 48 H 0.077 0.923 49 H 0.056 0.944 50 H 0.077 0.923 51 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.802 17.852 -5.900 25.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.126 4.126 3 C -0.080 4.080 4 C -0.153 4.153 5 C -0.144 4.144 6 C -0.153 4.153 7 C -0.137 4.137 8 C -0.080 4.080 9 C -0.136 4.136 10 C 0.298 3.702 11 O -0.460 6.460 12 N -0.364 5.364 13 C 0.058 3.942 14 H 0.068 0.932 15 C -0.168 4.168 16 C 0.057 3.943 17 N -0.327 5.327 18 C -0.376 4.376 19 H 0.100 0.900 20 C -0.254 4.254 21 N -0.590 5.590 22 Si 0.793 3.207 23 H -0.184 1.184 24 H -0.222 1.222 25 H -0.224 1.224 26 C 0.052 3.948 27 H 0.025 0.975 28 C -0.184 4.184 29 C -0.156 4.156 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.080 0.920 33 H 0.086 0.914 34 H 0.072 0.928 35 H 0.149 0.851 36 H 0.158 0.842 37 H 0.158 0.842 38 H 0.152 0.848 39 H 0.140 0.860 40 H 0.149 0.851 41 H 0.252 0.748 42 H 0.081 0.919 43 H 0.059 0.941 44 H 0.001 0.999 45 H 0.074 0.926 46 H 0.055 0.945 47 H 0.057 0.943 48 H 0.096 0.904 49 H 0.075 0.925 50 H 0.096 0.904 51 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -16.003 17.728 -6.384 24.721 hybrid contribution 0.600 -1.327 -0.002 1.457 sum -15.403 16.401 -6.386 23.389 Atomic orbital electron populations 1.21731 0.92770 1.02498 1.02722 1.20562 0.97574 0.92270 1.02224 1.19924 0.98707 0.96133 0.93220 1.21251 1.00398 0.95844 0.97772 1.21417 0.99242 0.94703 0.99055 1.21386 1.00489 1.01014 0.92455 1.21271 0.98647 0.94612 0.99147 1.19364 1.00534 0.94455 0.93680 1.20789 0.96293 1.00559 0.96000 1.21143 0.89689 0.79098 0.80318 1.90732 1.33323 1.64652 1.57315 1.46041 1.17081 1.49158 1.24098 1.20592 0.88763 0.90264 0.94584 0.93210 1.22355 0.99843 0.96361 0.98284 1.20535 0.91908 0.97979 0.83917 1.44459 1.85494 1.01766 1.00972 1.19617 1.26592 0.88588 1.02832 0.90042 1.25898 0.97066 1.02697 0.99712 1.70208 1.31293 1.30174 1.27290 0.85239 0.77093 0.80440 0.77917 1.18407 1.22203 1.22423 1.20656 0.94475 0.86742 0.92968 0.97477 1.21713 1.01426 1.01327 0.93930 1.22167 0.99862 1.00995 0.92539 0.91594 0.91644 0.91996 0.91393 0.92772 0.85141 0.84219 0.84203 0.84839 0.85985 0.85051 0.74755 0.91856 0.94136 0.99891 0.92621 0.94492 0.94252 0.90408 0.92476 0.90396 0.89230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.14 9.72 71.98 0.70 -1.44 16 2 C -0.09 -1.90 5.38 29.85 0.16 -1.74 16 3 C -0.08 -1.85 5.13 -19.87 -0.10 -1.95 16 4 C -0.13 -2.90 9.68 22.27 0.22 -2.68 16 5 C -0.13 -2.46 10.05 22.27 0.22 -2.24 16 6 C -0.14 -2.64 10.05 22.27 0.22 -2.41 16 7 C -0.12 -2.49 9.68 22.27 0.22 -2.28 16 8 C -0.08 -1.80 4.37 -19.86 -0.09 -1.89 16 9 C -0.10 -1.78 5.16 29.10 0.15 -1.63 16 10 C 0.51 14.04 6.99 87.66 0.61 14.65 16 11 O -0.58 -22.47 15.70 -3.03 -0.05 -22.52 16 12 N -0.71 -17.76 5.08 -442.41 -2.25 -20.01 16 13 C 0.16 5.51 2.41 45.02 0.11 5.62 16 14 H 0.05 2.02 7.58 -2.39 -0.02 2.00 16 15 C -0.13 -5.18 5.67 30.82 0.17 -5.01 16 16 C 0.18 9.36 5.31 86.51 0.46 9.82 16 17 N -0.60 -29.95 2.98 -674.38 -2.01 -31.96 16 18 C -0.25 -13.14 8.60 84.03 0.72 -12.42 16 19 H 0.08 4.11 6.21 -2.91 -0.02 4.09 16 20 C -0.06 -3.33 4.96 84.86 0.42 -2.91 16 21 N -0.94 -57.39 11.13 21.65 0.24 -57.15 16 22 Si 0.96 45.03 29.58 68.60 2.03 47.06 16 23 H -0.26 -11.25 7.11 99.48 0.71 -10.54 16 24 H -0.29 -13.88 7.11 99.48 0.71 -13.18 16 25 H -0.30 -14.03 7.11 99.48 0.71 -13.33 16 26 C 0.16 6.27 3.49 44.98 0.16 6.42 16 27 H 0.01 0.32 8.14 -2.39 -0.02 0.31 16 28 C -0.13 -4.33 7.94 71.98 0.57 -3.75 16 29 C -0.12 -3.52 4.84 30.68 0.15 -3.37 16 30 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.06 0.86 6.80 -2.38 -0.02 0.85 16 32 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.07 1.45 8.05 -2.38 -0.02 1.43 16 34 H 0.05 1.35 6.42 -2.39 -0.02 1.34 16 35 H 0.13 2.34 8.06 -2.91 -0.02 2.32 16 36 H 0.14 2.00 8.06 -2.91 -0.02 1.97 16 37 H 0.14 2.00 8.06 -2.92 -0.02 1.98 16 38 H 0.13 2.26 8.06 -2.91 -0.02 2.24 16 39 H 0.12 1.75 5.62 -2.39 -0.01 1.74 16 40 H 0.13 1.54 8.05 -2.39 -0.02 1.52 16 41 H 0.42 6.98 8.60 -92.71 -0.80 6.19 16 42 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 43 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 44 H -0.02 -0.97 8.14 -2.39 -0.02 -0.99 16 45 H 0.06 3.21 6.06 -2.39 -0.01 3.19 16 46 H 0.25 14.59 8.31 -92.71 -0.77 13.82 16 47 H 0.04 1.51 7.62 -2.39 -0.02 1.49 16 48 H 0.08 2.05 8.14 -2.38 -0.02 2.03 16 49 H 0.06 1.91 7.45 -2.39 -0.02 1.89 16 50 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 51 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 Total: -1.00 -74.39 397.51 3.15 -71.24 By element: Atomic # 1 Polarization: 22.45 SS G_CDS: 0.11 Total: 22.56 kcal Atomic # 6 Polarization: -14.29 SS G_CDS: 5.08 Total: -9.21 kcal Atomic # 7 Polarization: -105.10 SS G_CDS: -4.02 Total: -109.12 kcal Atomic # 8 Polarization: -22.47 SS G_CDS: -0.05 Total: -22.52 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 2.03 Total: 47.06 kcal Total: -74.39 3.15 -71.24 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947442142.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.542 kcal (2) G-P(sol) polarization free energy of solvation -74.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds