Wall clock time and date at job start Tue Mar 31 2020 16:38:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50706 * 109.46884 * 2 1 4 4 C 1.38257 * 119.99904 * 269.97928 * 3 2 1 5 5 C 1.38213 * 119.99602 * 179.97438 * 4 3 2 6 6 C 1.38253 * 120.00235 * 359.78043 * 5 4 3 7 7 C 1.38218 * 119.99831 * 0.49758 * 6 5 4 8 8 C 1.50701 * 120.00093 * 179.76573 * 7 6 5 9 9 C 1.50705 * 109.46850 * 269.72216 * 8 7 6 10 10 O 1.21285 * 119.99619 * 359.97438 * 9 8 7 11 11 N 1.34777 * 120.00134 * 179.97438 * 9 8 7 12 12 C 1.46490 * 119.99968 * 179.97438 * 11 9 8 13 13 H 1.08999 * 109.46496 * 35.03245 * 12 11 9 14 14 C 1.53045 * 109.46370 * 275.06878 * 12 11 9 15 15 C 1.53626 * 109.24269 * 178.49337 * 14 12 11 16 16 N 1.46920 * 108.54298 * 54.85818 * 15 14 12 17 17 C 1.36937 * 120.63158 * 126.36921 * 16 15 14 18 18 H 1.08000 * 119.99750 * 208.84952 * 17 16 15 19 19 C 1.38813 * 119.99747 * 29.12949 * 17 16 15 20 20 N 1.31620 * 120.00107 * 14.76315 * 19 17 16 21 21 Si 1.86798 * 119.99853 * 194.77020 * 19 17 16 22 22 H 1.48503 * 109.47346 * 59.99359 * 21 19 17 23 23 H 1.48496 * 109.47258 * 179.97438 * 21 19 17 24 24 H 1.48502 * 109.46871 * 299.99406 * 21 19 17 25 25 C 1.46931 * 118.73700 * 306.09135 * 16 15 14 26 26 H 1.09003 * 109.58670 * 293.93149 * 25 16 15 27 27 C 1.53004 * 109.58442 * 173.65035 * 25 16 15 28 28 C 1.53047 * 109.45944 * 155.00185 * 12 11 9 29 29 C 1.38214 * 119.99776 * 89.99988 * 3 2 1 30 30 H 1.09002 * 109.47071 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47076 * 299.99834 * 1 2 3 32 32 H 1.09003 * 109.46914 * 60.00204 * 1 2 3 33 33 H 1.09000 * 109.47076 * 240.00165 * 2 1 3 34 34 H 1.08993 * 109.46996 * 119.99667 * 2 1 3 35 35 H 1.07999 * 120.00331 * 359.97438 * 4 3 2 36 36 H 1.07996 * 119.99463 * 180.02562 * 5 4 3 37 37 H 1.08003 * 120.00139 * 180.25213 * 6 5 4 38 38 H 1.08992 * 109.47605 * 149.71806 * 8 7 6 39 39 H 1.08998 * 109.47164 * 29.71624 * 8 7 6 40 40 H 0.97003 * 119.99600 * 0.02562 * 11 9 8 41 41 H 1.08999 * 109.49613 * 298.56665 * 14 12 11 42 42 H 1.09001 * 109.49350 * 58.66362 * 14 12 11 43 43 H 1.09000 * 109.73688 * 295.11864 * 15 14 12 44 44 H 1.08999 * 109.66253 * 174.55201 * 15 14 12 45 45 H 0.97000 * 119.99976 * 180.02562 * 20 19 17 46 46 H 1.09004 * 109.46871 * 60.00099 * 27 25 16 47 47 H 1.08995 * 109.46929 * 179.97438 * 27 25 16 48 48 H 1.08998 * 109.47241 * 300.00312 * 27 25 16 49 49 H 1.09001 * 109.49778 * 61.43347 * 28 12 11 50 50 H 1.09004 * 109.52335 * 301.35125 * 28 12 11 51 51 H 1.08001 * 119.99997 * 359.97438 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 6 2.2632 2.0725 -1.1974 5 6 2.7233 3.3758 -1.1973 6 6 2.9485 4.0293 0.0000 7 6 2.7232 3.3760 1.1970 8 6 2.9736 4.0866 2.5021 9 6 4.3968 3.8501 2.9378 10 8 5.1348 3.1709 2.2558 11 7 4.8495 4.3933 4.0852 12 6 6.2327 4.1629 4.5089 13 1 6.8787 4.1192 3.6320 14 6 6.3186 2.8388 5.2716 15 6 7.7773 2.5839 5.6807 16 7 8.2609 3.7475 6.4362 17 6 8.8167 3.5912 7.6779 18 1 8.7449 4.3860 8.4056 19 6 9.4774 2.4135 7.9993 20 7 9.8262 1.5737 7.0477 21 14 9.8715 2.0204 9.7824 22 1 8.6108 1.9493 10.5640 23 1 10.5744 0.7144 9.8578 24 1 10.7422 3.0847 10.3432 25 6 8.1424 5.0813 5.8315 26 1 8.7868 5.1435 4.9546 27 6 8.5580 6.1449 6.8499 28 6 6.6847 5.3077 5.4185 29 6 2.2627 2.0724 1.1970 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 2.0839 1.5632 -2.1327 36 1 2.9032 3.8849 -2.1326 37 1 3.3042 5.0491 0.0000 38 1 2.2926 3.7026 3.2615 39 1 2.8066 5.1558 2.3716 40 1 4.2591 4.9361 4.6308 41 1 5.6923 2.8907 6.1622 42 1 5.9745 2.0270 4.6309 43 1 8.3906 2.4458 4.7902 44 1 7.8324 1.6932 6.3066 45 1 10.2875 0.7506 7.2723 46 1 9.5914 5.9745 7.1520 47 1 8.4698 7.1334 6.3994 48 1 7.9094 6.0843 7.7238 49 1 6.0549 5.3363 6.3077 50 1 6.6011 6.2534 4.8828 51 1 2.0823 1.5634 2.1323 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000947460719.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:38:43 Heat of formation + Delta-G solvation = -12.087832 kcal Electronic energy + Delta-G solvation = -28166.153813 eV Core-core repulsion = 24450.890968 eV Total energy + Delta-G solvation = -3715.262845 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.12186 -39.11761 -37.57368 -34.69684 -34.39922 -32.63562 -32.33002 -31.23076 -29.75893 -29.47252 -27.58322 -26.28856 -24.71023 -24.10056 -22.48302 -21.92945 -21.25459 -20.33111 -19.92595 -19.13502 -16.99590 -16.60952 -16.23911 -15.91739 -15.80328 -15.16982 -14.90979 -14.71017 -13.99454 -13.95200 -13.78743 -13.75660 -13.53545 -13.28560 -13.22907 -12.99058 -12.82070 -12.70588 -12.19993 -12.01599 -11.88206 -11.58325 -11.43784 -11.20289 -11.07658 -11.00294 -10.91460 -10.88565 -10.85642 -10.63815 -10.31066 -10.11501 -10.03171 -9.77678 -9.70655 -9.34945 -8.83498 -8.66417 -8.65959 -8.39664 -6.62504 -5.74983 -3.19353 1.26502 1.34497 2.85243 3.34895 3.39617 3.45203 3.45597 3.79926 4.50347 4.50524 4.56938 4.72897 4.93607 5.01422 5.03068 5.11204 5.15666 5.29168 5.31545 5.32515 5.40509 5.43148 5.45479 5.50404 5.62429 5.69118 5.69355 5.80111 5.90612 5.99446 6.02664 6.03709 6.17005 6.28480 6.32630 6.38473 6.43805 6.45849 6.49106 6.53684 6.54776 6.67306 6.81821 6.93041 6.94838 7.05067 7.10932 7.41384 7.71504 7.77629 7.83491 8.47375 8.49471 9.24438 9.87987 10.45168 11.33454 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.018157 B = 0.002406 C = 0.002223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1541.752032 B =11632.742138 C =12590.144612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.086 4.086 3 C -0.082 4.082 4 C -0.121 4.121 5 C -0.117 4.117 6 C -0.111 4.111 7 C -0.058 4.058 8 C -0.104 4.104 9 C 0.509 3.491 10 O -0.530 6.530 11 N -0.727 5.727 12 C 0.151 3.849 13 H 0.080 0.920 14 C -0.146 4.146 15 C 0.175 3.825 16 N -0.588 5.588 17 C -0.251 4.251 18 H 0.070 0.930 19 C 0.002 3.998 20 N -0.903 5.903 21 Si 0.902 3.098 22 H -0.285 1.285 23 H -0.291 1.291 24 H -0.283 1.283 25 C 0.170 3.830 26 H 0.026 0.974 27 C -0.135 4.135 28 C -0.133 4.133 29 C -0.102 4.102 30 H 0.056 0.944 31 H 0.055 0.945 32 H 0.054 0.946 33 H 0.071 0.929 34 H 0.072 0.928 35 H 0.118 0.882 36 H 0.120 0.880 37 H 0.118 0.882 38 H 0.100 0.900 39 H 0.100 0.900 40 H 0.394 0.606 41 H 0.054 0.946 42 H 0.051 0.949 43 H 0.020 0.980 44 H 0.090 0.910 45 H 0.254 0.746 46 H 0.062 0.938 47 H 0.038 0.962 48 H 0.053 0.947 49 H 0.063 0.937 50 H 0.054 0.946 51 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.096 4.735 -12.647 23.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.124 4.124 3 C -0.082 4.082 4 C -0.139 4.139 5 C -0.135 4.135 6 C -0.129 4.129 7 C -0.059 4.059 8 C -0.144 4.144 9 C 0.295 3.705 10 O -0.406 6.406 11 N -0.377 5.377 12 C 0.048 3.952 13 H 0.098 0.902 14 C -0.186 4.186 15 C 0.049 3.951 16 N -0.311 5.311 17 C -0.381 4.381 18 H 0.087 0.913 19 C -0.197 4.197 20 N -0.548 5.548 21 Si 0.732 3.268 22 H -0.211 1.211 23 H -0.217 1.217 24 H -0.209 1.209 25 C 0.063 3.937 26 H 0.044 0.956 27 C -0.193 4.193 28 C -0.173 4.173 29 C -0.120 4.120 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.073 0.927 33 H 0.089 0.911 34 H 0.091 0.909 35 H 0.136 0.864 36 H 0.138 0.862 37 H 0.136 0.864 38 H 0.118 0.882 39 H 0.118 0.882 40 H 0.227 0.773 41 H 0.072 0.928 42 H 0.070 0.930 43 H 0.038 0.962 44 H 0.108 0.892 45 H 0.064 0.936 46 H 0.081 0.919 47 H 0.057 0.943 48 H 0.072 0.928 49 H 0.082 0.918 50 H 0.072 0.928 51 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -18.433 4.078 -13.114 22.987 hybrid contribution 0.011 0.003 1.169 1.169 sum -18.423 4.081 -11.945 22.332 Atomic orbital electron populations 1.21744 0.94812 1.01606 1.02090 1.20549 0.96028 0.92777 1.02998 1.19826 0.99181 0.96070 0.93094 1.20971 1.00567 0.95013 0.97344 1.21046 0.99674 0.94985 0.97794 1.20942 0.99915 0.99987 0.92021 1.19259 0.98585 0.94360 0.93662 1.20713 0.95281 1.02249 0.96204 1.20438 0.89148 0.79893 0.81047 1.90744 1.57962 1.38055 1.53867 1.46338 1.14611 1.53197 1.23593 1.21021 0.80717 0.96102 0.97392 0.90222 1.22635 1.01969 0.95481 0.98556 1.20846 0.87205 0.91973 0.95103 1.44181 1.69571 1.00066 1.17289 1.19133 1.28259 1.01789 0.88877 0.91272 1.25110 0.97909 0.99385 0.97291 1.70005 1.42083 1.12199 1.30479 0.86390 0.77997 0.77394 0.85069 1.21115 1.21698 1.20929 1.20363 0.91318 0.87449 0.94591 0.95622 1.21795 1.02409 0.96037 0.99042 1.22366 1.00328 0.96078 0.98503 1.20839 0.99599 0.93927 0.97625 0.92472 0.92566 0.92676 0.91078 0.90927 0.86414 0.86217 0.86391 0.88185 0.88219 0.77288 0.92754 0.93026 0.96219 0.89158 0.93597 0.91867 0.94329 0.92796 0.91849 0.92776 0.86357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 9.90 37.16 0.37 -0.69 16 2 C -0.09 -0.76 6.06 -27.88 -0.17 -0.93 16 3 C -0.08 -0.89 5.13 -104.62 -0.54 -1.43 16 4 C -0.12 -1.26 9.70 -39.58 -0.38 -1.65 16 5 C -0.12 -1.23 10.05 -39.59 -0.40 -1.63 16 6 C -0.11 -1.26 9.70 -39.58 -0.38 -1.64 16 7 C -0.06 -0.69 4.37 -104.62 -0.46 -1.15 16 8 C -0.10 -1.07 5.83 -29.03 -0.17 -1.24 16 9 C 0.51 7.41 7.79 -10.98 -0.09 7.33 16 10 O -0.53 -10.26 15.70 5.55 0.09 -10.17 16 11 N -0.73 -9.99 5.08 -53.76 -0.27 -10.26 16 12 C 0.15 2.64 2.41 -67.89 -0.16 2.48 16 13 H 0.08 1.60 7.58 -51.93 -0.39 1.20 16 14 C -0.15 -2.94 5.67 -26.38 -0.15 -3.09 16 15 C 0.18 4.28 5.31 -3.49 -0.02 4.26 16 16 N -0.59 -14.44 2.98 -164.51 -0.49 -14.93 16 17 C -0.25 -6.68 8.59 -15.06 -0.13 -6.81 16 18 H 0.07 1.78 6.21 -52.49 -0.33 1.46 16 19 C 0.00 0.04 4.96 -17.43 -0.09 -0.04 16 20 N -0.90 -26.35 11.13 55.49 0.62 -25.73 16 21 Si 0.90 21.61 29.58 -169.99 -5.03 16.58 16 22 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 23 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 24 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 25 C 0.17 3.48 3.49 -67.60 -0.24 3.24 16 26 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 27 C -0.14 -2.48 7.94 37.16 0.30 -2.19 16 28 C -0.13 -2.21 4.84 -26.61 -0.13 -2.34 16 29 C -0.10 -1.20 9.36 -39.59 -0.37 -1.58 16 30 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 32 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 33 H 0.07 0.57 8.09 -51.93 -0.42 0.15 16 34 H 0.07 0.65 8.08 -51.93 -0.42 0.23 16 35 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 36 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 37 H 0.12 1.16 8.06 -52.48 -0.42 0.74 16 38 H 0.10 0.82 8.09 -51.93 -0.42 0.40 16 39 H 0.10 0.77 8.08 -51.93 -0.42 0.35 16 40 H 0.39 4.12 8.60 -40.82 -0.35 3.77 16 41 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 42 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 43 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.09 2.46 6.06 -51.93 -0.31 2.15 16 45 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 46 H 0.06 1.26 7.62 -51.93 -0.40 0.87 16 47 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 48 H 0.05 0.99 7.45 -51.93 -0.39 0.60 16 49 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 50 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 51 H 0.12 1.29 8.06 -52.49 -0.42 0.87 16 LS Contribution 404.73 15.07 6.10 6.10 Total: -1.00 -32.39 404.73 -11.09 -43.49 By element: Atomic # 1 Polarization: 12.92 SS G_CDS: -8.90 Total: 4.02 kcal Atomic # 6 Polarization: -5.89 SS G_CDS: -3.20 Total: -9.09 kcal Atomic # 7 Polarization: -50.78 SS G_CDS: -0.15 Total: -50.92 kcal Atomic # 8 Polarization: -10.26 SS G_CDS: 0.09 Total: -10.17 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.03 Total: 16.58 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -32.39 -11.09 -43.49 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947460719.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.401 kcal (2) G-P(sol) polarization free energy of solvation -32.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds