Wall clock time and date at job start Tue Mar 31 2020 16:38:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50706 * 109.46884 * 2 1 4 4 C 1.38257 * 119.99904 * 269.97928 * 3 2 1 5 5 C 1.38213 * 119.99602 * 179.97438 * 4 3 2 6 6 C 1.38253 * 120.00235 * 359.78043 * 5 4 3 7 7 C 1.38218 * 119.99831 * 0.49758 * 6 5 4 8 8 C 1.50701 * 120.00093 * 179.76573 * 7 6 5 9 9 C 1.50705 * 109.46850 * 269.72216 * 8 7 6 10 10 O 1.21285 * 119.99619 * 359.97438 * 9 8 7 11 11 N 1.34777 * 120.00134 * 179.97438 * 9 8 7 12 12 C 1.46490 * 119.99968 * 179.97438 * 11 9 8 13 13 H 1.08999 * 109.46496 * 35.03245 * 12 11 9 14 14 C 1.53045 * 109.46370 * 275.06878 * 12 11 9 15 15 C 1.53626 * 109.24269 * 178.49337 * 14 12 11 16 16 N 1.46920 * 108.54298 * 54.85818 * 15 14 12 17 17 C 1.36937 * 120.63158 * 126.36921 * 16 15 14 18 18 H 1.08000 * 119.99750 * 208.84952 * 17 16 15 19 19 C 1.38813 * 119.99747 * 29.12949 * 17 16 15 20 20 N 1.31620 * 120.00107 * 14.76315 * 19 17 16 21 21 Si 1.86798 * 119.99853 * 194.77020 * 19 17 16 22 22 H 1.48503 * 109.47346 * 59.99359 * 21 19 17 23 23 H 1.48496 * 109.47258 * 179.97438 * 21 19 17 24 24 H 1.48502 * 109.46871 * 299.99406 * 21 19 17 25 25 C 1.46931 * 118.73700 * 306.09135 * 16 15 14 26 26 H 1.09003 * 109.58670 * 293.93149 * 25 16 15 27 27 C 1.53004 * 109.58442 * 173.65035 * 25 16 15 28 28 C 1.53047 * 109.45944 * 155.00185 * 12 11 9 29 29 C 1.38214 * 119.99776 * 89.99988 * 3 2 1 30 30 H 1.09002 * 109.47071 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47076 * 299.99834 * 1 2 3 32 32 H 1.09003 * 109.46914 * 60.00204 * 1 2 3 33 33 H 1.09000 * 109.47076 * 240.00165 * 2 1 3 34 34 H 1.08993 * 109.46996 * 119.99667 * 2 1 3 35 35 H 1.07999 * 120.00331 * 359.97438 * 4 3 2 36 36 H 1.07996 * 119.99463 * 180.02562 * 5 4 3 37 37 H 1.08003 * 120.00139 * 180.25213 * 6 5 4 38 38 H 1.08992 * 109.47605 * 149.71806 * 8 7 6 39 39 H 1.08998 * 109.47164 * 29.71624 * 8 7 6 40 40 H 0.97003 * 119.99600 * 0.02562 * 11 9 8 41 41 H 1.08999 * 109.49613 * 298.56665 * 14 12 11 42 42 H 1.09001 * 109.49350 * 58.66362 * 14 12 11 43 43 H 1.09000 * 109.73688 * 295.11864 * 15 14 12 44 44 H 1.08999 * 109.66253 * 174.55201 * 15 14 12 45 45 H 0.97000 * 119.99976 * 180.02562 * 20 19 17 46 46 H 1.09004 * 109.46871 * 60.00099 * 27 25 16 47 47 H 1.08995 * 109.46929 * 179.97438 * 27 25 16 48 48 H 1.08998 * 109.47241 * 300.00312 * 27 25 16 49 49 H 1.09001 * 109.49778 * 61.43347 * 28 12 11 50 50 H 1.09004 * 109.52335 * 301.35125 * 28 12 11 51 51 H 1.08001 * 119.99997 * 359.97438 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 6 2.2632 2.0725 -1.1974 5 6 2.7233 3.3758 -1.1973 6 6 2.9485 4.0293 0.0000 7 6 2.7232 3.3760 1.1970 8 6 2.9736 4.0866 2.5021 9 6 4.3968 3.8501 2.9378 10 8 5.1348 3.1709 2.2558 11 7 4.8495 4.3933 4.0852 12 6 6.2327 4.1629 4.5089 13 1 6.8787 4.1192 3.6320 14 6 6.3186 2.8388 5.2716 15 6 7.7773 2.5839 5.6807 16 7 8.2609 3.7475 6.4362 17 6 8.8167 3.5912 7.6779 18 1 8.7449 4.3860 8.4056 19 6 9.4774 2.4135 7.9993 20 7 9.8262 1.5737 7.0477 21 14 9.8715 2.0204 9.7824 22 1 8.6108 1.9493 10.5640 23 1 10.5744 0.7144 9.8578 24 1 10.7422 3.0847 10.3432 25 6 8.1424 5.0813 5.8315 26 1 8.7868 5.1435 4.9546 27 6 8.5580 6.1449 6.8499 28 6 6.6847 5.3077 5.4185 29 6 2.2627 2.0724 1.1970 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 2.0839 1.5632 -2.1327 36 1 2.9032 3.8849 -2.1326 37 1 3.3042 5.0491 0.0000 38 1 2.2926 3.7026 3.2615 39 1 2.8066 5.1558 2.3716 40 1 4.2591 4.9361 4.6308 41 1 5.6923 2.8907 6.1622 42 1 5.9745 2.0270 4.6309 43 1 8.3906 2.4458 4.7902 44 1 7.8324 1.6932 6.3066 45 1 10.2875 0.7506 7.2723 46 1 9.5914 5.9745 7.1520 47 1 8.4698 7.1334 6.3994 48 1 7.9094 6.0843 7.7238 49 1 6.0549 5.3363 6.3077 50 1 6.6011 6.2534 4.8828 51 1 2.0823 1.5634 2.1323 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000947460719.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:38:42 Heat of formation + Delta-G solvation = -30.111298 kcal Electronic energy + Delta-G solvation = -28166.935369 eV Core-core repulsion = 24450.890968 eV Total energy + Delta-G solvation = -3716.044401 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.20255 -40.16792 -39.11566 -36.08925 -35.29964 -34.22713 -33.46951 -32.79010 -31.30970 -30.36190 -28.65252 -27.78511 -26.56222 -24.79587 -23.89759 -23.19779 -22.47077 -21.52813 -21.21823 -20.61067 -18.42410 -17.87537 -17.49077 -17.18499 -16.76115 -16.74003 -15.88453 -15.85393 -15.68038 -15.46969 -15.04393 -14.76259 -14.66138 -14.57403 -14.48826 -14.27079 -13.99204 -13.76865 -13.32816 -12.98790 -12.92288 -12.83861 -12.72549 -12.64905 -12.61638 -12.58247 -12.35541 -12.13403 -12.10266 -11.84219 -11.72451 -11.69922 -11.62590 -11.49571 -11.31061 -10.81082 -10.54380 -9.96216 -9.66521 -9.47811 -8.64974 -7.83138 -5.30245 0.44080 0.52741 1.47552 1.49881 1.56279 1.72410 2.26004 2.53011 2.92381 3.33030 3.59392 3.69109 3.83350 3.87214 4.00053 4.07453 4.12397 4.24296 4.28063 4.30220 4.40110 4.41008 4.50543 4.58702 4.61430 4.62658 4.70373 4.72382 4.75657 4.79820 4.85222 4.96203 5.02357 5.08479 5.08666 5.12202 5.16743 5.21235 5.24231 5.37783 5.39210 5.49837 5.55775 5.58772 5.61806 5.68059 5.71287 5.72865 5.74519 6.16215 6.43171 6.68106 7.17137 7.38389 7.89098 8.42157 9.23980 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.018157 B = 0.002406 C = 0.002223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1541.752032 B =11632.742138 C =12590.144612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.087 4.087 3 C -0.093 4.093 4 C -0.131 4.131 5 C -0.125 4.125 6 C -0.126 4.126 7 C -0.076 4.076 8 C -0.093 4.093 9 C 0.508 3.492 10 O -0.584 6.584 11 N -0.711 5.711 12 C 0.162 3.838 13 H 0.050 0.950 14 C -0.129 4.129 15 C 0.183 3.817 16 N -0.603 5.603 17 C -0.248 4.248 18 H 0.082 0.918 19 C -0.060 4.060 20 N -0.943 5.943 21 Si 0.966 3.034 22 H -0.276 1.276 23 H -0.301 1.301 24 H -0.273 1.273 25 C 0.157 3.843 26 H 0.008 0.992 27 C -0.126 4.126 28 C -0.116 4.116 29 C -0.123 4.123 30 H 0.068 0.932 31 H 0.052 0.948 32 H 0.058 0.942 33 H 0.078 0.922 34 H 0.066 0.934 35 H 0.136 0.864 36 H 0.140 0.860 37 H 0.131 0.869 38 H 0.126 0.874 39 H 0.133 0.867 40 H 0.416 0.584 41 H 0.062 0.938 42 H 0.040 0.960 43 H -0.017 1.017 44 H 0.055 0.945 45 H 0.246 0.754 46 H 0.038 0.962 47 H 0.077 0.923 48 H 0.056 0.944 49 H 0.077 0.923 50 H 0.090 0.910 51 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.580 7.131 -12.275 25.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.124 4.124 3 C -0.093 4.093 4 C -0.149 4.149 5 C -0.143 4.143 6 C -0.144 4.144 7 C -0.076 4.076 8 C -0.132 4.132 9 C 0.296 3.704 10 O -0.464 6.464 11 N -0.363 5.363 12 C 0.057 3.943 13 H 0.068 0.932 14 C -0.169 4.169 15 C 0.057 3.943 16 N -0.327 5.327 17 C -0.378 4.378 18 H 0.099 0.901 19 C -0.254 4.254 20 N -0.590 5.590 21 Si 0.794 3.206 22 H -0.202 1.202 23 H -0.227 1.227 24 H -0.199 1.199 25 C 0.051 3.949 26 H 0.025 0.975 27 C -0.184 4.184 28 C -0.155 4.155 29 C -0.141 4.141 30 H 0.087 0.913 31 H 0.071 0.929 32 H 0.077 0.923 33 H 0.096 0.904 34 H 0.085 0.915 35 H 0.154 0.846 36 H 0.158 0.842 37 H 0.149 0.851 38 H 0.144 0.856 39 H 0.151 0.849 40 H 0.253 0.747 41 H 0.081 0.919 42 H 0.058 0.942 43 H 0.001 0.999 44 H 0.074 0.926 45 H 0.055 0.945 46 H 0.057 0.943 47 H 0.096 0.904 48 H 0.075 0.925 49 H 0.096 0.904 50 H 0.108 0.892 51 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -20.971 6.540 -12.721 25.385 hybrid contribution 0.803 -0.726 0.954 1.443 sum -20.168 5.813 -11.767 24.063 Atomic orbital electron populations 1.21705 0.93551 1.02400 1.02095 1.20588 0.97105 0.91677 1.03040 1.20135 0.98995 0.97015 0.93173 1.21275 1.00299 0.95269 0.98007 1.21386 0.99134 0.95221 0.98586 1.21230 1.00120 1.00825 0.92264 1.19523 0.98843 0.94626 0.94631 1.20731 0.92113 1.04327 0.96026 1.21233 0.90488 0.78439 0.80278 1.90733 1.59776 1.40389 1.55463 1.46036 1.13225 1.53249 1.23805 1.20596 0.82628 0.95026 0.96028 0.93183 1.22363 0.98569 0.97047 0.98929 1.20534 0.89535 0.91344 0.92928 1.44441 1.69592 1.01562 1.17067 1.19542 1.26713 1.01657 0.89909 0.90083 1.25911 0.98749 0.99763 1.00970 1.70197 1.43828 1.12546 1.32433 0.85359 0.77911 0.76692 0.80617 1.20243 1.22743 1.19885 1.20668 0.93813 0.85975 0.94467 0.97454 1.21710 1.00784 0.97166 0.98711 1.22163 0.97321 0.96978 0.99074 1.21054 1.00461 0.94427 0.98141 0.91277 0.92873 0.92329 0.90383 0.91534 0.84584 0.84215 0.85129 0.85643 0.84865 0.74677 0.91892 0.94157 0.99876 0.92611 0.94461 0.94282 0.90392 0.92456 0.90418 0.89192 0.86233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.88 9.90 71.98 0.71 -1.17 16 2 C -0.09 -1.47 6.06 29.85 0.18 -1.29 16 3 C -0.09 -1.99 5.13 -19.86 -0.10 -2.09 16 4 C -0.13 -2.60 9.70 22.27 0.22 -2.38 16 5 C -0.13 -2.49 10.05 22.27 0.22 -2.27 16 6 C -0.13 -2.70 9.70 22.27 0.22 -2.49 16 7 C -0.08 -1.70 4.37 -19.87 -0.09 -1.79 16 8 C -0.09 -1.64 5.83 29.10 0.17 -1.47 16 9 C 0.51 13.96 7.79 87.66 0.68 14.64 16 10 O -0.58 -22.76 15.70 -3.04 -0.05 -22.80 16 11 N -0.71 -17.73 5.08 -442.40 -2.25 -19.98 16 12 C 0.16 5.51 2.41 45.02 0.11 5.62 16 13 H 0.05 2.04 7.58 -2.39 -0.02 2.02 16 14 C -0.13 -5.24 5.67 30.82 0.17 -5.07 16 15 C 0.18 9.40 5.31 86.51 0.46 9.86 16 16 N -0.60 -30.04 2.98 -674.39 -2.01 -32.05 16 17 C -0.25 -13.28 8.59 84.03 0.72 -12.56 16 18 H 0.08 4.09 6.21 -2.91 -0.02 4.07 16 19 C -0.06 -3.35 4.96 84.86 0.42 -2.93 16 20 N -0.94 -57.58 11.13 21.65 0.24 -57.34 16 21 Si 0.97 45.10 29.58 68.60 2.03 47.12 16 22 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 23 H -0.30 -14.40 7.11 99.48 0.71 -13.69 16 24 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 25 C 0.16 6.26 3.49 44.97 0.16 6.41 16 26 H 0.01 0.34 8.14 -2.39 -0.02 0.32 16 27 C -0.13 -4.33 7.94 71.98 0.57 -3.76 16 28 C -0.12 -3.53 4.84 30.67 0.15 -3.38 16 29 C -0.12 -2.84 9.36 22.27 0.21 -2.64 16 30 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 33 H 0.08 1.19 8.09 -2.39 -0.02 1.17 16 34 H 0.07 1.19 8.08 -2.39 -0.02 1.17 16 35 H 0.14 2.07 8.06 -2.91 -0.02 2.05 16 36 H 0.14 2.07 8.06 -2.91 -0.02 2.05 16 37 H 0.13 2.32 8.06 -2.91 -0.02 2.30 16 38 H 0.13 1.60 8.09 -2.39 -0.02 1.59 16 39 H 0.13 1.48 8.08 -2.39 -0.02 1.46 16 40 H 0.42 6.92 8.60 -92.71 -0.80 6.13 16 41 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 42 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 43 H -0.02 -0.96 8.14 -2.39 -0.02 -0.98 16 44 H 0.06 3.22 6.06 -2.39 -0.01 3.21 16 45 H 0.25 14.71 8.31 -92.71 -0.77 13.94 16 46 H 0.04 1.50 7.62 -2.38 -0.02 1.49 16 47 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 48 H 0.06 1.92 7.45 -2.39 -0.02 1.90 16 49 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 50 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 51 H 0.12 2.58 8.06 -2.91 -0.02 2.56 16 Total: -1.00 -74.82 404.73 3.25 -71.58 By element: Atomic # 1 Polarization: 22.11 SS G_CDS: 0.10 Total: 22.21 kcal Atomic # 6 Polarization: -13.92 SS G_CDS: 5.18 Total: -8.74 kcal Atomic # 7 Polarization: -105.35 SS G_CDS: -4.02 Total: -109.37 kcal Atomic # 8 Polarization: -22.76 SS G_CDS: -0.05 Total: -22.80 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 2.03 Total: 47.12 kcal Total: -74.82 3.25 -71.58 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947460719.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.464 kcal (2) G-P(sol) polarization free energy of solvation -74.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.576 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds