Wall clock time and date at job start Tue Mar 31 2020 16:38:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50701 * 109.47090 * 2 1 4 4 C 1.38263 * 120.00276 * 269.73135 * 3 2 1 5 5 C 1.38212 * 119.99729 * 179.80947 * 4 3 2 6 6 C 1.38250 * 120.00378 * 0.39205 * 5 4 3 7 7 C 1.38217 * 120.00067 * 359.86349 * 6 5 4 8 8 C 1.50694 * 120.00271 * 179.97438 * 7 6 5 9 9 C 1.50703 * 109.46971 * 269.97347 * 8 7 6 10 10 O 1.21288 * 119.99962 * 359.97438 * 9 8 7 11 11 N 1.34770 * 120.00363 * 179.97438 * 9 8 7 12 12 C 1.46497 * 120.00270 * 179.97438 * 11 9 8 13 13 H 1.09002 * 109.46146 * 34.97333 * 12 11 9 14 14 C 1.53044 * 109.45893 * 275.00028 * 12 11 9 15 15 C 1.53201 * 109.31101 * 178.61568 * 14 12 11 16 16 N 1.46921 * 108.77563 * 54.63336 * 15 14 12 17 17 C 1.36935 * 120.63064 * 126.37226 * 16 15 14 18 18 H 1.07998 * 120.00215 * 207.68800 * 17 16 15 19 19 C 1.38811 * 120.00072 * 27.68516 * 17 16 15 20 20 N 1.31626 * 119.99847 * 17.36047 * 19 17 16 21 21 Si 1.86800 * 120.00256 * 197.36267 * 19 17 16 22 22 H 1.48500 * 109.47148 * 90.00352 * 21 19 17 23 23 H 1.48505 * 109.46999 * 210.00061 * 21 19 17 24 24 H 1.48502 * 109.47195 * 329.99782 * 21 19 17 25 25 C 1.46928 * 118.74136 * 306.39095 * 16 15 14 26 26 H 1.08996 * 109.58824 * 173.39622 * 25 16 15 27 27 C 1.53006 * 109.58709 * 293.82276 * 25 16 15 28 28 C 1.53043 * 109.46315 * 154.93235 * 12 11 9 29 29 C 1.38210 * 120.00014 * 90.00044 * 3 2 1 30 30 H 1.09008 * 109.47135 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47473 * 60.00006 * 1 2 3 32 32 H 1.08998 * 109.47092 * 299.99610 * 1 2 3 33 33 H 1.08999 * 109.47473 * 119.99993 * 2 1 3 34 34 H 1.08998 * 109.47092 * 240.00390 * 2 1 3 35 35 H 1.07998 * 119.99297 * 359.97438 * 4 3 2 36 36 H 1.08000 * 119.99574 * 180.22812 * 5 4 3 37 37 H 1.07995 * 120.00345 * 179.83064 * 6 5 4 38 38 H 1.09001 * 109.47679 * 29.96774 * 8 7 6 39 39 H 1.08999 * 109.47493 * 149.97485 * 8 7 6 40 40 H 0.96999 * 119.99920 * 359.97438 * 11 9 8 41 41 H 1.09004 * 109.49840 * 298.56080 * 14 12 11 42 42 H 1.08999 * 109.49808 * 58.66292 * 14 12 11 43 43 H 1.08996 * 109.58409 * 174.42433 * 15 14 12 44 44 H 1.08998 * 109.58432 * 294.84566 * 15 14 12 45 45 H 0.97002 * 120.00109 * 179.97438 * 20 19 17 46 46 H 1.08999 * 109.46606 * 59.99888 * 27 25 16 47 47 H 1.08992 * 109.47241 * 179.97438 * 27 25 16 48 48 H 1.09000 * 109.46559 * 300.00119 * 27 25 16 49 49 H 1.08999 * 109.49752 * 301.33766 * 28 12 11 50 50 H 1.09004 * 109.49733 * 61.43203 * 28 12 11 51 51 H 1.08009 * 119.99787 * 359.97438 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2681 2.0708 -1.1973 5 6 2.7250 3.3752 -1.1972 6 6 2.9541 4.0274 0.0001 7 6 2.7235 3.3759 1.1970 8 6 2.9737 4.0865 2.5021 9 6 4.3967 3.8498 2.9382 10 8 5.1349 3.1705 2.2564 11 7 4.8492 4.3930 4.0856 12 6 6.2323 4.1624 4.5097 13 1 6.8784 4.1175 3.6329 14 6 6.3174 2.8392 5.2740 15 6 7.7709 2.5845 5.6859 16 7 8.2602 3.7482 6.4376 17 6 8.8150 3.5932 7.6799 18 1 8.7635 4.3978 8.3985 19 6 9.4436 2.4020 8.0156 20 7 9.8121 1.5632 7.0705 21 14 9.7666 1.9893 9.8086 22 1 8.6069 1.2448 10.3618 23 1 10.9878 1.1507 9.9113 24 1 9.9619 3.2444 10.5780 25 6 8.1425 5.0814 5.8314 26 1 8.4389 5.8398 6.5559 27 6 9.0444 5.1656 4.5983 28 6 6.6849 5.3080 5.4179 29 6 2.2627 2.0724 1.1969 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 0.5138 0.8900 33 1 1.8934 -0.5138 0.8900 34 1 1.8933 -0.5138 -0.8900 35 1 2.0926 1.5600 -2.1326 36 1 2.9056 3.8841 -2.1325 37 1 3.3137 5.0457 0.0001 38 1 2.8069 5.1557 2.3716 39 1 2.2924 3.7026 3.2614 40 1 4.2590 4.9366 4.6306 41 1 5.6910 2.8925 6.1645 42 1 5.9729 2.0267 4.6343 43 1 7.8221 1.6955 6.3144 44 1 8.3831 2.4409 4.7956 45 1 10.2517 0.7310 7.3051 46 1 8.7407 4.4100 3.8738 47 1 8.9553 6.1550 4.1498 48 1 10.0794 4.9915 4.8927 49 1 6.6019 6.2528 4.8806 50 1 6.0550 5.3381 6.3070 51 1 2.0823 1.5633 2.1323 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000947460720.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:38:47 Heat of formation + Delta-G solvation = -12.470258 kcal Electronic energy + Delta-G solvation = -28312.021615 eV Core-core repulsion = 24596.742187 eV Total energy + Delta-G solvation = -3715.279428 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -40.13429 -39.15526 -37.66475 -34.65258 -34.34726 -32.68108 -32.36064 -30.78677 -29.77582 -29.49340 -27.67068 -26.71183 -24.28113 -24.09674 -22.52303 -21.92929 -21.65885 -20.67291 -19.93413 -18.36806 -17.16305 -16.61492 -16.47986 -15.93352 -15.84028 -15.11949 -14.72629 -14.66270 -13.95466 -13.94262 -13.82814 -13.71863 -13.59224 -13.31272 -13.02942 -12.99709 -12.69529 -12.49283 -12.23688 -12.19385 -11.96812 -11.87871 -11.43109 -11.39266 -11.06697 -10.98220 -10.91367 -10.89591 -10.77804 -10.60427 -10.32351 -10.16296 -10.01633 -9.69948 -9.68692 -9.33645 -8.83566 -8.67456 -8.66049 -8.38726 -6.68025 -5.77192 -3.19767 1.26442 1.34440 2.85270 3.35182 3.39118 3.45192 3.46434 3.80058 4.49454 4.50489 4.56899 4.72810 4.93549 5.01383 5.02759 5.11177 5.15593 5.29267 5.32436 5.33357 5.40570 5.42348 5.43751 5.50402 5.63413 5.69052 5.69397 5.81785 5.90618 5.99748 6.03630 6.04530 6.09033 6.27492 6.34752 6.38443 6.46133 6.48864 6.49355 6.54681 6.59896 6.68626 6.81466 6.91410 6.94562 6.98763 7.17543 7.40971 7.70383 7.77707 7.81166 8.46174 8.48458 9.22524 9.86098 10.42833 11.30957 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.017879 B = 0.002457 C = 0.002285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1565.706575 B =11395.241836 C =12248.590890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.086 4.086 3 C -0.082 4.082 4 C -0.121 4.121 5 C -0.117 4.117 6 C -0.110 4.110 7 C -0.058 4.058 8 C -0.105 4.105 9 C 0.509 3.491 10 O -0.531 6.531 11 N -0.727 5.727 12 C 0.150 3.850 13 H 0.084 0.916 14 C -0.146 4.146 15 C 0.174 3.826 16 N -0.585 5.585 17 C -0.253 4.253 18 H 0.066 0.934 19 C 0.003 3.997 20 N -0.900 5.900 21 Si 0.902 3.098 22 H -0.288 1.288 23 H -0.292 1.292 24 H -0.279 1.279 25 C 0.170 3.830 26 H 0.065 0.935 27 C -0.163 4.163 28 C -0.132 4.132 29 C -0.102 4.102 30 H 0.056 0.944 31 H 0.054 0.946 32 H 0.055 0.945 33 H 0.072 0.928 34 H 0.071 0.929 35 H 0.118 0.882 36 H 0.120 0.880 37 H 0.118 0.882 38 H 0.100 0.900 39 H 0.100 0.900 40 H 0.394 0.606 41 H 0.053 0.947 42 H 0.051 0.949 43 H 0.089 0.911 44 H 0.021 0.979 45 H 0.254 0.746 46 H 0.049 0.951 47 H 0.036 0.964 48 H 0.055 0.945 49 H 0.055 0.945 50 H 0.062 0.938 51 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.018 4.500 -13.267 23.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.123 4.123 3 C -0.082 4.082 4 C -0.139 4.139 5 C -0.135 4.135 6 C -0.128 4.128 7 C -0.059 4.059 8 C -0.145 4.145 9 C 0.295 3.705 10 O -0.406 6.406 11 N -0.378 5.378 12 C 0.047 3.953 13 H 0.102 0.898 14 C -0.187 4.187 15 C 0.048 3.952 16 N -0.307 5.307 17 C -0.382 4.382 18 H 0.084 0.916 19 C -0.196 4.196 20 N -0.544 5.544 21 Si 0.732 3.268 22 H -0.215 1.215 23 H -0.218 1.218 24 H -0.205 1.205 25 C 0.061 3.939 26 H 0.083 0.917 27 C -0.222 4.222 28 C -0.172 4.172 29 C -0.120 4.120 30 H 0.075 0.925 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.091 0.909 34 H 0.089 0.911 35 H 0.136 0.864 36 H 0.138 0.862 37 H 0.136 0.864 38 H 0.118 0.882 39 H 0.118 0.882 40 H 0.227 0.773 41 H 0.072 0.928 42 H 0.070 0.930 43 H 0.107 0.893 44 H 0.039 0.961 45 H 0.064 0.936 46 H 0.068 0.932 47 H 0.055 0.945 48 H 0.074 0.926 49 H 0.073 0.927 50 H 0.081 0.919 51 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -18.359 3.836 -13.720 23.238 hybrid contribution 0.002 -0.007 1.160 1.160 sum -18.357 3.829 -12.560 22.570 Atomic orbital electron populations 1.21741 0.94813 1.01607 1.02093 1.20546 0.96032 0.92776 1.02996 1.19824 0.99182 0.96087 0.93096 1.20972 1.00567 0.94994 0.97344 1.21045 0.99703 0.94977 0.97796 1.20938 0.99855 1.00023 0.92018 1.19259 0.98593 0.94367 0.93663 1.20712 0.95292 1.02248 0.96199 1.20434 0.89144 0.79901 0.81051 1.90743 1.57947 1.38068 1.53893 1.46345 1.14682 1.53139 1.23599 1.21081 0.80664 0.95984 0.97615 0.89787 1.22561 1.01928 0.95586 0.98586 1.20740 0.87302 0.91941 0.95252 1.44168 1.69092 1.00326 1.17065 1.19171 1.29623 1.00719 0.88704 0.91644 1.25051 0.97890 0.99280 0.97384 1.70043 1.42109 1.11650 1.30596 0.86304 0.77305 0.78103 0.85117 1.21513 1.21815 1.20472 1.20442 0.90387 0.89628 0.93402 0.91674 1.22304 1.01351 0.99164 0.99371 1.22295 1.00108 0.96252 0.98532 1.20840 0.99598 0.93915 0.97622 0.92471 0.92674 0.92567 0.90929 0.91080 0.86415 0.86217 0.86392 0.88219 0.88189 0.77312 0.92773 0.93022 0.89330 0.96127 0.93619 0.93208 0.94525 0.92608 0.92665 0.91931 0.86362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 9.89 37.16 0.37 -0.69 16 2 C -0.09 -0.76 6.07 -27.88 -0.17 -0.93 16 3 C -0.08 -0.89 5.13 -104.62 -0.54 -1.43 16 4 C -0.12 -1.26 9.70 -39.58 -0.38 -1.64 16 5 C -0.12 -1.23 10.05 -39.59 -0.40 -1.63 16 6 C -0.11 -1.25 9.70 -39.58 -0.38 -1.64 16 7 C -0.06 -0.69 4.37 -104.63 -0.46 -1.15 16 8 C -0.10 -1.07 5.83 -29.04 -0.17 -1.24 16 9 C 0.51 7.38 7.79 -10.99 -0.09 7.30 16 10 O -0.53 -10.21 15.70 5.55 0.09 -10.13 16 11 N -0.73 -9.95 5.08 -53.76 -0.27 -10.22 16 12 C 0.15 2.59 2.21 -67.89 -0.15 2.44 16 13 H 0.08 1.66 5.92 -51.93 -0.31 1.36 16 14 C -0.15 -2.93 5.65 -26.60 -0.15 -3.08 16 15 C 0.17 4.22 4.90 -3.71 -0.02 4.20 16 16 N -0.58 -14.29 2.70 -164.78 -0.45 -14.74 16 17 C -0.25 -6.81 9.58 -15.06 -0.14 -6.95 16 18 H 0.07 1.73 7.89 -52.49 -0.41 1.32 16 19 C 0.00 0.08 4.91 -17.43 -0.09 -0.01 16 20 N -0.90 -26.18 11.19 55.49 0.62 -25.56 16 21 Si 0.90 21.62 29.59 -169.99 -5.03 16.59 16 22 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 23 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 24 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 25 C 0.17 3.43 3.29 -67.60 -0.22 3.20 16 26 H 0.07 1.31 7.93 -51.93 -0.41 0.89 16 27 C -0.16 -3.15 9.03 37.16 0.34 -2.81 16 28 C -0.13 -2.18 5.02 -26.61 -0.13 -2.31 16 29 C -0.10 -1.20 9.36 -39.58 -0.37 -1.57 16 30 H 0.06 0.35 8.14 -51.92 -0.42 -0.07 16 31 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 32 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 33 H 0.07 0.65 8.09 -51.93 -0.42 0.23 16 34 H 0.07 0.57 8.08 -51.93 -0.42 0.15 16 35 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 36 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 37 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 38 H 0.10 0.76 8.09 -51.93 -0.42 0.34 16 39 H 0.10 0.81 8.09 -51.93 -0.42 0.39 16 40 H 0.39 4.09 8.60 -40.82 -0.35 3.74 16 41 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 42 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 43 H 0.09 2.41 6.03 -51.93 -0.31 2.10 16 44 H 0.02 0.54 7.50 -51.93 -0.39 0.15 16 45 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 46 H 0.05 1.01 5.72 -51.93 -0.30 0.71 16 47 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 48 H 0.05 1.18 8.14 -51.93 -0.42 0.75 16 49 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 50 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 51 H 0.12 1.29 8.06 -52.48 -0.42 0.86 16 LS Contribution 403.81 15.07 6.09 6.09 Total: -1.00 -32.34 403.81 -10.91 -43.25 By element: Atomic # 1 Polarization: 13.44 SS G_CDS: -8.80 Total: 4.64 kcal Atomic # 6 Polarization: -6.78 SS G_CDS: -3.16 Total: -9.93 kcal Atomic # 7 Polarization: -50.41 SS G_CDS: -0.10 Total: -50.51 kcal Atomic # 8 Polarization: -10.21 SS G_CDS: 0.09 Total: -10.13 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.03 Total: 16.59 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -32.34 -10.91 -43.25 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947460720.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.780 kcal (2) G-P(sol) polarization free energy of solvation -32.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds