Wall clock time and date at job start Tue Mar 31 2020 16:38:46
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 C 1.50701 * 109.47090 * 2 1
4 4 C 1.38263 * 120.00276 * 269.73135 * 3 2 1
5 5 C 1.38212 * 119.99729 * 179.80947 * 4 3 2
6 6 C 1.38250 * 120.00378 * 0.39205 * 5 4 3
7 7 C 1.38217 * 120.00067 * 359.86349 * 6 5 4
8 8 C 1.50694 * 120.00271 * 179.97438 * 7 6 5
9 9 C 1.50703 * 109.46971 * 269.97347 * 8 7 6
10 10 O 1.21288 * 119.99962 * 359.97438 * 9 8 7
11 11 N 1.34770 * 120.00363 * 179.97438 * 9 8 7
12 12 C 1.46497 * 120.00270 * 179.97438 * 11 9 8
13 13 H 1.09002 * 109.46146 * 34.97333 * 12 11 9
14 14 C 1.53044 * 109.45893 * 275.00028 * 12 11 9
15 15 C 1.53201 * 109.31101 * 178.61568 * 14 12 11
16 16 N 1.46921 * 108.77563 * 54.63336 * 15 14 12
17 17 C 1.36935 * 120.63064 * 126.37226 * 16 15 14
18 18 H 1.07998 * 120.00215 * 207.68800 * 17 16 15
19 19 C 1.38811 * 120.00072 * 27.68516 * 17 16 15
20 20 N 1.31626 * 119.99847 * 17.36047 * 19 17 16
21 21 Si 1.86800 * 120.00256 * 197.36267 * 19 17 16
22 22 H 1.48500 * 109.47148 * 90.00352 * 21 19 17
23 23 H 1.48505 * 109.46999 * 210.00061 * 21 19 17
24 24 H 1.48502 * 109.47195 * 329.99782 * 21 19 17
25 25 C 1.46928 * 118.74136 * 306.39095 * 16 15 14
26 26 H 1.08996 * 109.58824 * 173.39622 * 25 16 15
27 27 C 1.53006 * 109.58709 * 293.82276 * 25 16 15
28 28 C 1.53043 * 109.46315 * 154.93235 * 12 11 9
29 29 C 1.38210 * 120.00014 * 90.00044 * 3 2 1
30 30 H 1.09008 * 109.47135 * 179.97438 * 1 2 3
31 31 H 1.08999 * 109.47473 * 60.00006 * 1 2 3
32 32 H 1.08998 * 109.47092 * 299.99610 * 1 2 3
33 33 H 1.08999 * 109.47473 * 119.99993 * 2 1 3
34 34 H 1.08998 * 109.47092 * 240.00390 * 2 1 3
35 35 H 1.07998 * 119.99297 * 359.97438 * 4 3 2
36 36 H 1.08000 * 119.99574 * 180.22812 * 5 4 3
37 37 H 1.07995 * 120.00345 * 179.83064 * 6 5 4
38 38 H 1.09001 * 109.47679 * 29.96774 * 8 7 6
39 39 H 1.08999 * 109.47493 * 149.97485 * 8 7 6
40 40 H 0.96999 * 119.99920 * 359.97438 * 11 9 8
41 41 H 1.09004 * 109.49840 * 298.56080 * 14 12 11
42 42 H 1.08999 * 109.49808 * 58.66292 * 14 12 11
43 43 H 1.08996 * 109.58409 * 174.42433 * 15 14 12
44 44 H 1.08998 * 109.58432 * 294.84566 * 15 14 12
45 45 H 0.97002 * 120.00109 * 179.97438 * 20 19 17
46 46 H 1.08999 * 109.46606 * 59.99888 * 27 25 16
47 47 H 1.08992 * 109.47241 * 179.97438 * 27 25 16
48 48 H 1.09000 * 109.46559 * 300.00119 * 27 25 16
49 49 H 1.08999 * 109.49752 * 301.33766 * 28 12 11
50 50 H 1.09004 * 109.49733 * 61.43203 * 28 12 11
51 51 H 1.08009 * 119.99787 * 359.97438 * 29 3 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0323 1.4208 0.0000
4 6 2.2681 2.0708 -1.1973
5 6 2.7250 3.3752 -1.1972
6 6 2.9541 4.0274 0.0001
7 6 2.7235 3.3759 1.1970
8 6 2.9737 4.0865 2.5021
9 6 4.3967 3.8498 2.9382
10 8 5.1349 3.1705 2.2564
11 7 4.8492 4.3930 4.0856
12 6 6.2323 4.1624 4.5097
13 1 6.8784 4.1175 3.6329
14 6 6.3174 2.8392 5.2740
15 6 7.7709 2.5845 5.6859
16 7 8.2602 3.7482 6.4376
17 6 8.8150 3.5932 7.6799
18 1 8.7635 4.3978 8.3985
19 6 9.4436 2.4020 8.0156
20 7 9.8121 1.5632 7.0705
21 14 9.7666 1.9893 9.8086
22 1 8.6069 1.2448 10.3618
23 1 10.9878 1.1507 9.9113
24 1 9.9619 3.2444 10.5780
25 6 8.1425 5.0814 5.8314
26 1 8.4389 5.8398 6.5559
27 6 9.0444 5.1656 4.5983
28 6 6.6849 5.3080 5.4179
29 6 2.2627 2.0724 1.1969
30 1 -0.3634 -1.0277 -0.0005
31 1 -0.3634 0.5138 -0.8900
32 1 -0.3633 0.5138 0.8900
33 1 1.8934 -0.5138 0.8900
34 1 1.8933 -0.5138 -0.8900
35 1 2.0926 1.5600 -2.1326
36 1 2.9056 3.8841 -2.1325
37 1 3.3137 5.0457 0.0001
38 1 2.8069 5.1557 2.3716
39 1 2.2924 3.7026 3.2614
40 1 4.2590 4.9366 4.6306
41 1 5.6910 2.8925 6.1645
42 1 5.9729 2.0267 4.6343
43 1 7.8221 1.6955 6.3144
44 1 8.3831 2.4409 4.7956
45 1 10.2517 0.7310 7.3051
46 1 8.7407 4.4100 3.8738
47 1 8.9553 6.1550 4.1498
48 1 10.0794 4.9915 4.8927
49 1 6.6019 6.2528 4.8806
50 1 6.0550 5.3381 6.3070
51 1 2.0823 1.5633 2.1323
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000947460720.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 16:38:46
Heat of formation + Delta-G solvation = -30.247319 kcal
Electronic energy + Delta-G solvation = -28312.792486 eV
Core-core repulsion = 24596.742187 eV
Total energy + Delta-G solvation = -3716.050299 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 330.205 amu
Computer time = 1.05 seconds
Orbital eigenvalues (eV)
-41.22016 -40.20802 -39.16082 -36.00201 -35.29630 -34.30971 -33.37802 -32.43530
-31.35728 -30.36443 -28.92029 -28.03795 -26.14142 -24.79437 -23.88159 -23.52471
-22.78617 -21.73992 -20.96055 -20.00426 -18.81544 -17.82035 -17.55009 -17.19781
-16.75596 -16.56691 -15.91868 -15.83952 -15.54738 -15.49503 -14.99652 -14.73209
-14.58282 -14.51772 -14.26255 -14.20580 -13.98522 -13.86510 -13.75385 -13.16117
-13.00498 -12.89501 -12.80145 -12.66925 -12.59039 -12.54772 -12.30261 -12.12794
-12.02661 -11.98963 -11.76638 -11.69640 -11.62254 -11.48197 -11.13619 -10.80109
-10.55549 -9.93855 -9.66203 -9.47476 -8.69188 -7.85579 -5.30726 0.44463
0.53067 1.47183 1.48503 1.57274 1.73613 2.28019 2.51837 2.92954
3.29870 3.61889 3.69671 3.82985 3.84973 4.00405 4.09116 4.15134
4.24629 4.30021 4.31141 4.41129 4.45330 4.50699 4.52123 4.59117
4.63068 4.70406 4.70707 4.77441 4.80121 4.84298 4.92528 5.02743
5.08579 5.10018 5.15401 5.16304 5.21526 5.24554 5.33637 5.37862
5.44227 5.51316 5.59147 5.63897 5.68378 5.68539 5.74811 5.75609
6.16534 6.40746 6.69394 7.15569 7.39599 7.87809 8.40113 9.20982
Molecular weight = 330.20amu
Principal moments of inertia in cm(-1)
A = 0.017879 B = 0.002457 C = 0.002285
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1565.706575 B =11395.241836 C =12248.590890
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.140 4.140
2 C -0.087 4.087
3 C -0.093 4.093
4 C -0.131 4.131
5 C -0.125 4.125
6 C -0.126 4.126
7 C -0.076 4.076
8 C -0.093 4.093
9 C 0.508 3.492
10 O -0.584 6.584
11 N -0.712 5.712
12 C 0.162 3.838
13 H 0.059 0.941
14 C -0.131 4.131
15 C 0.185 3.815
16 N -0.599 5.599
17 C -0.256 4.256
18 H 0.073 0.927
19 C -0.055 4.055
20 N -0.938 5.938
21 Si 0.966 3.034
22 H -0.287 1.287
23 H -0.300 1.300
24 H -0.265 1.265
25 C 0.159 3.841
26 H 0.071 0.929
27 C -0.153 4.153
28 C -0.117 4.117
29 C -0.123 4.123
30 H 0.068 0.932
31 H 0.058 0.942
32 H 0.052 0.948
33 H 0.066 0.934
34 H 0.078 0.922
35 H 0.136 0.864
36 H 0.140 0.860
37 H 0.131 0.869
38 H 0.133 0.867
39 H 0.125 0.875
40 H 0.415 0.585
41 H 0.060 0.940
42 H 0.039 0.961
43 H 0.052 0.948
44 H -0.013 1.013
45 H 0.247 0.753
46 H 0.032 0.968
47 H 0.075 0.925
48 H 0.027 0.973
49 H 0.092 0.908
50 H 0.074 0.926
51 H 0.119 0.881
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -21.373 6.793 -13.183 26.015
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.198 4.198
2 C -0.124 4.124
3 C -0.093 4.093
4 C -0.148 4.148
5 C -0.143 4.143
6 C -0.144 4.144
7 C -0.076 4.076
8 C -0.132 4.132
9 C 0.296 3.704
10 O -0.463 6.463
11 N -0.364 5.364
12 C 0.057 3.943
13 H 0.077 0.923
14 C -0.171 4.171
15 C 0.059 3.941
16 N -0.322 5.322
17 C -0.386 4.386
18 H 0.091 0.909
19 C -0.250 4.250
20 N -0.584 5.584
21 Si 0.795 3.205
22 H -0.214 1.214
23 H -0.227 1.227
24 H -0.189 1.189
25 C 0.052 3.948
26 H 0.089 0.911
27 C -0.212 4.212
28 C -0.156 4.156
29 C -0.141 4.141
30 H 0.087 0.913
31 H 0.077 0.923
32 H 0.071 0.929
33 H 0.085 0.915
34 H 0.096 0.904
35 H 0.154 0.846
36 H 0.158 0.842
37 H 0.149 0.851
38 H 0.151 0.849
39 H 0.143 0.857
40 H 0.252 0.748
41 H 0.079 0.921
42 H 0.058 0.942
43 H 0.070 0.930
44 H 0.005 0.995
45 H 0.056 0.944
46 H 0.051 0.949
47 H 0.094 0.906
48 H 0.047 0.953
49 H 0.110 0.890
50 H 0.093 0.907
51 H 0.137 0.863
Dipole moment (debyes) X Y Z Total
from point charges -20.767 6.194 -13.619 25.595
hybrid contribution 0.751 -0.706 1.054 1.475
sum -20.016 5.488 -12.564 24.261
Atomic orbital electron populations
1.21702 0.93563 1.02394 1.02091 1.20586 0.97098 0.91689 1.03034
1.20131 0.99001 0.97023 0.93177 1.21276 1.00312 0.95262 0.97999
1.21384 0.99154 0.95201 0.98588 1.21226 1.00059 1.00855 0.92253
1.19522 0.98830 0.94618 0.94632 1.20732 0.92193 1.04312 0.96006
1.21210 0.90456 0.78465 0.80297 1.90733 1.59734 1.40366 1.55474
1.46057 1.13383 1.53184 1.23792 1.20658 0.82563 0.94738 0.96347
0.92323 1.22313 0.98650 0.97250 0.98921 1.20397 0.89524 0.91122
0.93085 1.44379 1.69124 1.01836 1.16811 1.19554 1.28422 1.00712
0.89922 0.90910 1.25828 0.98528 0.99542 1.01066 1.70219 1.43709
1.11940 1.32520 0.85277 0.76534 0.78022 0.80687 1.21392 1.22672
1.18922 1.20734 0.93140 0.87413 0.93532 0.91089 1.22188 0.99395
1.00794 0.98867 1.22121 0.97167 0.97214 0.99115 1.21054 1.00475
0.94426 0.98126 0.91285 0.92331 0.92881 0.91543 0.90385 0.84601
0.84218 0.85124 0.84881 0.85710 0.74754 0.92094 0.94196 0.92993
0.99486 0.94358 0.94908 0.90642 0.95349 0.88987 0.90691 0.86261
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.88 9.89 71.98 0.71 -1.17 16
2 C -0.09 -1.47 6.07 29.85 0.18 -1.29 16
3 C -0.09 -1.99 5.13 -19.86 -0.10 -2.09 16
4 C -0.13 -2.59 9.70 22.27 0.22 -2.37 16
5 C -0.13 -2.48 10.05 22.27 0.22 -2.25 16
6 C -0.13 -2.68 9.70 22.27 0.22 -2.46 16
7 C -0.08 -1.69 4.37 -19.87 -0.09 -1.77 16
8 C -0.09 -1.64 5.83 29.10 0.17 -1.47 16
9 C 0.51 13.82 7.79 87.66 0.68 14.51 16
10 O -0.58 -22.48 15.70 -3.06 -0.05 -22.53 16
11 N -0.71 -17.56 5.08 -442.40 -2.25 -19.80 16
12 C 0.16 5.39 2.21 45.02 0.10 5.49 16
13 H 0.06 2.32 5.92 -2.39 -0.01 2.30 16
14 C -0.13 -5.30 5.65 30.68 0.17 -5.13 16
15 C 0.19 9.39 4.90 86.37 0.42 9.81 16
16 N -0.60 -29.60 2.70 -675.23 -1.82 -31.43 16
17 C -0.26 -13.87 9.58 84.03 0.81 -13.06 16
18 H 0.07 3.78 7.89 -2.91 -0.02 3.75 16
19 C -0.05 -3.07 4.91 84.86 0.42 -2.65 16
20 N -0.94 -56.92 11.19 21.65 0.24 -56.68 16
21 Si 0.97 45.14 29.59 68.60 2.03 47.17 16
22 H -0.29 -13.23 7.11 99.48 0.71 -12.53 16
23 H -0.30 -14.28 7.11 99.48 0.71 -13.57 16
24 H -0.26 -11.61 7.11 99.48 0.71 -10.90 16
25 C 0.16 6.20 3.29 44.98 0.15 6.34 16
26 H 0.07 2.69 7.93 -2.39 -0.02 2.67 16
27 C -0.15 -5.87 9.03 71.98 0.65 -5.22 16
28 C -0.12 -3.50 5.02 30.67 0.15 -3.34 16
29 C -0.12 -2.83 9.36 22.27 0.21 -2.63 16
30 H 0.07 0.75 8.14 -2.38 -0.02 0.73 16
31 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16
32 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16
33 H 0.07 1.18 8.09 -2.39 -0.02 1.16 16
34 H 0.08 1.18 8.08 -2.39 -0.02 1.16 16
35 H 0.14 2.06 8.06 -2.91 -0.02 2.04 16
36 H 0.14 2.06 8.06 -2.91 -0.02 2.03 16
37 H 0.13 2.31 8.06 -2.91 -0.02 2.28 16
38 H 0.13 1.47 8.09 -2.39 -0.02 1.45 16
39 H 0.12 1.59 8.09 -2.39 -0.02 1.58 16
40 H 0.42 6.86 8.60 -92.71 -0.80 6.06 16
41 H 0.06 2.37 8.14 -2.38 -0.02 2.35 16
42 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16
43 H 0.05 2.99 6.03 -2.39 -0.01 2.98 16
44 H -0.01 -0.73 7.50 -2.39 -0.02 -0.74 16
45 H 0.25 14.64 8.31 -92.71 -0.77 13.87 16
46 H 0.03 1.34 5.72 -2.39 -0.01 1.33 16
47 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16
48 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16
49 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16
50 H 0.07 2.12 8.14 -2.38 -0.02 2.10 16
51 H 0.12 2.57 8.06 -2.91 -0.02 2.55 16
Total: -1.00 -74.24 403.81 3.55 -70.69
By element:
Atomic # 1 Polarization: 23.22 SS G_CDS: 0.10 Total: 23.32 kcal
Atomic # 6 Polarization: -16.04 SS G_CDS: 5.29 Total: -10.74 kcal
Atomic # 7 Polarization: -104.08 SS G_CDS: -3.83 Total: -107.91 kcal
Atomic # 8 Polarization: -22.48 SS G_CDS: -0.05 Total: -22.53 kcal
Atomic # 14 Polarization: 45.14 SS G_CDS: 2.03 Total: 47.17 kcal
Total: -74.24 3.55 -70.69 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000947460720.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 40.439 kcal
(2) G-P(sol) polarization free energy of solvation -74.235 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.796 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.549 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.686 kcal
(6) G-S(sol) free energy of system = (1) + (5) -30.247 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.05 seconds