Wall clock time and date at job start Tue Mar 31 2020 16:38:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50701 * 109.47090 * 2 1 4 4 C 1.38263 * 120.00276 * 269.73135 * 3 2 1 5 5 C 1.38212 * 119.99729 * 179.80947 * 4 3 2 6 6 C 1.38250 * 120.00378 * 0.39205 * 5 4 3 7 7 C 1.38217 * 120.00067 * 359.86349 * 6 5 4 8 8 C 1.50694 * 120.00271 * 179.97438 * 7 6 5 9 9 C 1.50703 * 109.46971 * 269.97347 * 8 7 6 10 10 O 1.21288 * 119.99962 * 359.97438 * 9 8 7 11 11 N 1.34770 * 120.00363 * 179.97438 * 9 8 7 12 12 C 1.46497 * 120.00270 * 179.97438 * 11 9 8 13 13 H 1.09002 * 109.46146 * 34.97333 * 12 11 9 14 14 C 1.53044 * 109.45893 * 275.00028 * 12 11 9 15 15 C 1.53201 * 109.31101 * 178.61568 * 14 12 11 16 16 N 1.46921 * 108.77563 * 54.63336 * 15 14 12 17 17 C 1.36935 * 120.63064 * 126.37226 * 16 15 14 18 18 H 1.07998 * 120.00215 * 207.68800 * 17 16 15 19 19 C 1.38811 * 120.00072 * 27.68516 * 17 16 15 20 20 N 1.31626 * 119.99847 * 17.36047 * 19 17 16 21 21 Si 1.86800 * 120.00256 * 197.36267 * 19 17 16 22 22 H 1.48500 * 109.47148 * 90.00352 * 21 19 17 23 23 H 1.48505 * 109.46999 * 210.00061 * 21 19 17 24 24 H 1.48502 * 109.47195 * 329.99782 * 21 19 17 25 25 C 1.46928 * 118.74136 * 306.39095 * 16 15 14 26 26 H 1.08996 * 109.58824 * 173.39622 * 25 16 15 27 27 C 1.53006 * 109.58709 * 293.82276 * 25 16 15 28 28 C 1.53043 * 109.46315 * 154.93235 * 12 11 9 29 29 C 1.38210 * 120.00014 * 90.00044 * 3 2 1 30 30 H 1.09008 * 109.47135 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47473 * 60.00006 * 1 2 3 32 32 H 1.08998 * 109.47092 * 299.99610 * 1 2 3 33 33 H 1.08999 * 109.47473 * 119.99993 * 2 1 3 34 34 H 1.08998 * 109.47092 * 240.00390 * 2 1 3 35 35 H 1.07998 * 119.99297 * 359.97438 * 4 3 2 36 36 H 1.08000 * 119.99574 * 180.22812 * 5 4 3 37 37 H 1.07995 * 120.00345 * 179.83064 * 6 5 4 38 38 H 1.09001 * 109.47679 * 29.96774 * 8 7 6 39 39 H 1.08999 * 109.47493 * 149.97485 * 8 7 6 40 40 H 0.96999 * 119.99920 * 359.97438 * 11 9 8 41 41 H 1.09004 * 109.49840 * 298.56080 * 14 12 11 42 42 H 1.08999 * 109.49808 * 58.66292 * 14 12 11 43 43 H 1.08996 * 109.58409 * 174.42433 * 15 14 12 44 44 H 1.08998 * 109.58432 * 294.84566 * 15 14 12 45 45 H 0.97002 * 120.00109 * 179.97438 * 20 19 17 46 46 H 1.08999 * 109.46606 * 59.99888 * 27 25 16 47 47 H 1.08992 * 109.47241 * 179.97438 * 27 25 16 48 48 H 1.09000 * 109.46559 * 300.00119 * 27 25 16 49 49 H 1.08999 * 109.49752 * 301.33766 * 28 12 11 50 50 H 1.09004 * 109.49733 * 61.43203 * 28 12 11 51 51 H 1.08009 * 119.99787 * 359.97438 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2681 2.0708 -1.1973 5 6 2.7250 3.3752 -1.1972 6 6 2.9541 4.0274 0.0001 7 6 2.7235 3.3759 1.1970 8 6 2.9737 4.0865 2.5021 9 6 4.3967 3.8498 2.9382 10 8 5.1349 3.1705 2.2564 11 7 4.8492 4.3930 4.0856 12 6 6.2323 4.1624 4.5097 13 1 6.8784 4.1175 3.6329 14 6 6.3174 2.8392 5.2740 15 6 7.7709 2.5845 5.6859 16 7 8.2602 3.7482 6.4376 17 6 8.8150 3.5932 7.6799 18 1 8.7635 4.3978 8.3985 19 6 9.4436 2.4020 8.0156 20 7 9.8121 1.5632 7.0705 21 14 9.7666 1.9893 9.8086 22 1 8.6069 1.2448 10.3618 23 1 10.9878 1.1507 9.9113 24 1 9.9619 3.2444 10.5780 25 6 8.1425 5.0814 5.8314 26 1 8.4389 5.8398 6.5559 27 6 9.0444 5.1656 4.5983 28 6 6.6849 5.3080 5.4179 29 6 2.2627 2.0724 1.1969 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 0.5138 0.8900 33 1 1.8934 -0.5138 0.8900 34 1 1.8933 -0.5138 -0.8900 35 1 2.0926 1.5600 -2.1326 36 1 2.9056 3.8841 -2.1325 37 1 3.3137 5.0457 0.0001 38 1 2.8069 5.1557 2.3716 39 1 2.2924 3.7026 3.2614 40 1 4.2590 4.9366 4.6306 41 1 5.6910 2.8925 6.1645 42 1 5.9729 2.0267 4.6343 43 1 7.8221 1.6955 6.3144 44 1 8.3831 2.4409 4.7956 45 1 10.2517 0.7310 7.3051 46 1 8.7407 4.4100 3.8738 47 1 8.9553 6.1550 4.1498 48 1 10.0794 4.9915 4.8927 49 1 6.6019 6.2528 4.8806 50 1 6.0550 5.3381 6.3070 51 1 2.0823 1.5633 2.1323 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000947460720.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:38:46 Heat of formation + Delta-G solvation = -30.247319 kcal Electronic energy + Delta-G solvation = -28312.792486 eV Core-core repulsion = 24596.742187 eV Total energy + Delta-G solvation = -3716.050299 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.22016 -40.20802 -39.16082 -36.00201 -35.29630 -34.30971 -33.37802 -32.43530 -31.35728 -30.36443 -28.92029 -28.03795 -26.14142 -24.79437 -23.88159 -23.52471 -22.78617 -21.73992 -20.96055 -20.00426 -18.81544 -17.82035 -17.55009 -17.19781 -16.75596 -16.56691 -15.91868 -15.83952 -15.54738 -15.49503 -14.99652 -14.73209 -14.58282 -14.51772 -14.26255 -14.20580 -13.98522 -13.86510 -13.75385 -13.16117 -13.00498 -12.89501 -12.80145 -12.66925 -12.59039 -12.54772 -12.30261 -12.12794 -12.02661 -11.98963 -11.76638 -11.69640 -11.62254 -11.48197 -11.13619 -10.80109 -10.55549 -9.93855 -9.66203 -9.47476 -8.69188 -7.85579 -5.30726 0.44463 0.53067 1.47183 1.48503 1.57274 1.73613 2.28019 2.51837 2.92954 3.29870 3.61889 3.69671 3.82985 3.84973 4.00405 4.09116 4.15134 4.24629 4.30021 4.31141 4.41129 4.45330 4.50699 4.52123 4.59117 4.63068 4.70406 4.70707 4.77441 4.80121 4.84298 4.92528 5.02743 5.08579 5.10018 5.15401 5.16304 5.21526 5.24554 5.33637 5.37862 5.44227 5.51316 5.59147 5.63897 5.68378 5.68539 5.74811 5.75609 6.16534 6.40746 6.69394 7.15569 7.39599 7.87809 8.40113 9.20982 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.017879 B = 0.002457 C = 0.002285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1565.706575 B =11395.241836 C =12248.590890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.087 4.087 3 C -0.093 4.093 4 C -0.131 4.131 5 C -0.125 4.125 6 C -0.126 4.126 7 C -0.076 4.076 8 C -0.093 4.093 9 C 0.508 3.492 10 O -0.584 6.584 11 N -0.712 5.712 12 C 0.162 3.838 13 H 0.059 0.941 14 C -0.131 4.131 15 C 0.185 3.815 16 N -0.599 5.599 17 C -0.256 4.256 18 H 0.073 0.927 19 C -0.055 4.055 20 N -0.938 5.938 21 Si 0.966 3.034 22 H -0.287 1.287 23 H -0.300 1.300 24 H -0.265 1.265 25 C 0.159 3.841 26 H 0.071 0.929 27 C -0.153 4.153 28 C -0.117 4.117 29 C -0.123 4.123 30 H 0.068 0.932 31 H 0.058 0.942 32 H 0.052 0.948 33 H 0.066 0.934 34 H 0.078 0.922 35 H 0.136 0.864 36 H 0.140 0.860 37 H 0.131 0.869 38 H 0.133 0.867 39 H 0.125 0.875 40 H 0.415 0.585 41 H 0.060 0.940 42 H 0.039 0.961 43 H 0.052 0.948 44 H -0.013 1.013 45 H 0.247 0.753 46 H 0.032 0.968 47 H 0.075 0.925 48 H 0.027 0.973 49 H 0.092 0.908 50 H 0.074 0.926 51 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.373 6.793 -13.183 26.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.124 4.124 3 C -0.093 4.093 4 C -0.148 4.148 5 C -0.143 4.143 6 C -0.144 4.144 7 C -0.076 4.076 8 C -0.132 4.132 9 C 0.296 3.704 10 O -0.463 6.463 11 N -0.364 5.364 12 C 0.057 3.943 13 H 0.077 0.923 14 C -0.171 4.171 15 C 0.059 3.941 16 N -0.322 5.322 17 C -0.386 4.386 18 H 0.091 0.909 19 C -0.250 4.250 20 N -0.584 5.584 21 Si 0.795 3.205 22 H -0.214 1.214 23 H -0.227 1.227 24 H -0.189 1.189 25 C 0.052 3.948 26 H 0.089 0.911 27 C -0.212 4.212 28 C -0.156 4.156 29 C -0.141 4.141 30 H 0.087 0.913 31 H 0.077 0.923 32 H 0.071 0.929 33 H 0.085 0.915 34 H 0.096 0.904 35 H 0.154 0.846 36 H 0.158 0.842 37 H 0.149 0.851 38 H 0.151 0.849 39 H 0.143 0.857 40 H 0.252 0.748 41 H 0.079 0.921 42 H 0.058 0.942 43 H 0.070 0.930 44 H 0.005 0.995 45 H 0.056 0.944 46 H 0.051 0.949 47 H 0.094 0.906 48 H 0.047 0.953 49 H 0.110 0.890 50 H 0.093 0.907 51 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -20.767 6.194 -13.619 25.595 hybrid contribution 0.751 -0.706 1.054 1.475 sum -20.016 5.488 -12.564 24.261 Atomic orbital electron populations 1.21702 0.93563 1.02394 1.02091 1.20586 0.97098 0.91689 1.03034 1.20131 0.99001 0.97023 0.93177 1.21276 1.00312 0.95262 0.97999 1.21384 0.99154 0.95201 0.98588 1.21226 1.00059 1.00855 0.92253 1.19522 0.98830 0.94618 0.94632 1.20732 0.92193 1.04312 0.96006 1.21210 0.90456 0.78465 0.80297 1.90733 1.59734 1.40366 1.55474 1.46057 1.13383 1.53184 1.23792 1.20658 0.82563 0.94738 0.96347 0.92323 1.22313 0.98650 0.97250 0.98921 1.20397 0.89524 0.91122 0.93085 1.44379 1.69124 1.01836 1.16811 1.19554 1.28422 1.00712 0.89922 0.90910 1.25828 0.98528 0.99542 1.01066 1.70219 1.43709 1.11940 1.32520 0.85277 0.76534 0.78022 0.80687 1.21392 1.22672 1.18922 1.20734 0.93140 0.87413 0.93532 0.91089 1.22188 0.99395 1.00794 0.98867 1.22121 0.97167 0.97214 0.99115 1.21054 1.00475 0.94426 0.98126 0.91285 0.92331 0.92881 0.91543 0.90385 0.84601 0.84218 0.85124 0.84881 0.85710 0.74754 0.92094 0.94196 0.92993 0.99486 0.94358 0.94908 0.90642 0.95349 0.88987 0.90691 0.86261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.88 9.89 71.98 0.71 -1.17 16 2 C -0.09 -1.47 6.07 29.85 0.18 -1.29 16 3 C -0.09 -1.99 5.13 -19.86 -0.10 -2.09 16 4 C -0.13 -2.59 9.70 22.27 0.22 -2.37 16 5 C -0.13 -2.48 10.05 22.27 0.22 -2.25 16 6 C -0.13 -2.68 9.70 22.27 0.22 -2.46 16 7 C -0.08 -1.69 4.37 -19.87 -0.09 -1.77 16 8 C -0.09 -1.64 5.83 29.10 0.17 -1.47 16 9 C 0.51 13.82 7.79 87.66 0.68 14.51 16 10 O -0.58 -22.48 15.70 -3.06 -0.05 -22.53 16 11 N -0.71 -17.56 5.08 -442.40 -2.25 -19.80 16 12 C 0.16 5.39 2.21 45.02 0.10 5.49 16 13 H 0.06 2.32 5.92 -2.39 -0.01 2.30 16 14 C -0.13 -5.30 5.65 30.68 0.17 -5.13 16 15 C 0.19 9.39 4.90 86.37 0.42 9.81 16 16 N -0.60 -29.60 2.70 -675.23 -1.82 -31.43 16 17 C -0.26 -13.87 9.58 84.03 0.81 -13.06 16 18 H 0.07 3.78 7.89 -2.91 -0.02 3.75 16 19 C -0.05 -3.07 4.91 84.86 0.42 -2.65 16 20 N -0.94 -56.92 11.19 21.65 0.24 -56.68 16 21 Si 0.97 45.14 29.59 68.60 2.03 47.17 16 22 H -0.29 -13.23 7.11 99.48 0.71 -12.53 16 23 H -0.30 -14.28 7.11 99.48 0.71 -13.57 16 24 H -0.26 -11.61 7.11 99.48 0.71 -10.90 16 25 C 0.16 6.20 3.29 44.98 0.15 6.34 16 26 H 0.07 2.69 7.93 -2.39 -0.02 2.67 16 27 C -0.15 -5.87 9.03 71.98 0.65 -5.22 16 28 C -0.12 -3.50 5.02 30.67 0.15 -3.34 16 29 C -0.12 -2.83 9.36 22.27 0.21 -2.63 16 30 H 0.07 0.75 8.14 -2.38 -0.02 0.73 16 31 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 33 H 0.07 1.18 8.09 -2.39 -0.02 1.16 16 34 H 0.08 1.18 8.08 -2.39 -0.02 1.16 16 35 H 0.14 2.06 8.06 -2.91 -0.02 2.04 16 36 H 0.14 2.06 8.06 -2.91 -0.02 2.03 16 37 H 0.13 2.31 8.06 -2.91 -0.02 2.28 16 38 H 0.13 1.47 8.09 -2.39 -0.02 1.45 16 39 H 0.12 1.59 8.09 -2.39 -0.02 1.58 16 40 H 0.42 6.86 8.60 -92.71 -0.80 6.06 16 41 H 0.06 2.37 8.14 -2.38 -0.02 2.35 16 42 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 43 H 0.05 2.99 6.03 -2.39 -0.01 2.98 16 44 H -0.01 -0.73 7.50 -2.39 -0.02 -0.74 16 45 H 0.25 14.64 8.31 -92.71 -0.77 13.87 16 46 H 0.03 1.34 5.72 -2.39 -0.01 1.33 16 47 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 48 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 49 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 50 H 0.07 2.12 8.14 -2.38 -0.02 2.10 16 51 H 0.12 2.57 8.06 -2.91 -0.02 2.55 16 Total: -1.00 -74.24 403.81 3.55 -70.69 By element: Atomic # 1 Polarization: 23.22 SS G_CDS: 0.10 Total: 23.32 kcal Atomic # 6 Polarization: -16.04 SS G_CDS: 5.29 Total: -10.74 kcal Atomic # 7 Polarization: -104.08 SS G_CDS: -3.83 Total: -107.91 kcal Atomic # 8 Polarization: -22.48 SS G_CDS: -0.05 Total: -22.53 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 2.03 Total: 47.17 kcal Total: -74.24 3.55 -70.69 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947460720.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.439 kcal (2) G-P(sol) polarization free energy of solvation -74.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds