Wall clock time and date at job start Tue Mar 31 2020 16:38:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50700 * 109.47031 * 2 1 4 4 C 1.38254 * 119.99855 * 90.00114 * 3 2 1 5 5 C 1.38215 * 120.00035 * 180.02562 * 4 3 2 6 6 C 1.38256 * 119.99695 * 359.97438 * 5 4 3 7 7 C 1.38211 * 120.00427 * 0.02741 * 6 5 4 8 8 C 1.50701 * 120.00228 * 180.02562 * 7 6 5 9 9 C 1.50693 * 109.47203 * 269.97721 * 8 7 6 10 10 O 1.21282 * 119.99980 * 359.97438 * 9 8 7 11 11 N 1.34777 * 120.00233 * 180.02562 * 9 8 7 12 12 C 1.46500 * 120.00395 * 179.97438 * 11 9 8 13 13 H 1.08994 * 109.45824 * 324.97193 * 12 11 9 14 14 C 1.53041 * 109.46055 * 84.92926 * 12 11 9 15 15 C 1.53185 * 109.31133 * 181.38458 * 14 12 11 16 16 N 1.46920 * 108.78142 * 305.36428 * 15 14 12 17 17 C 1.36933 * 120.63237 * 233.59039 * 16 15 14 18 18 H 1.08009 * 120.00062 * 150.18053 * 17 16 15 19 19 C 1.38807 * 120.00247 * 330.17992 * 17 16 15 20 20 N 1.31623 * 119.99946 * 344.48542 * 19 17 16 21 21 Si 1.86798 * 120.00541 * 164.48434 * 19 17 16 22 22 H 1.48502 * 109.46825 * 0.02562 * 21 19 17 23 23 H 1.48495 * 109.47412 * 119.99839 * 21 19 17 24 24 H 1.48507 * 109.47234 * 240.00305 * 21 19 17 25 25 C 1.46923 * 118.73659 * 53.60496 * 16 15 14 26 26 H 1.09001 * 109.70491 * 66.25666 * 25 16 15 27 27 C 1.52998 * 109.58744 * 186.60820 * 25 16 15 28 28 C 1.53045 * 109.46113 * 204.99439 * 12 11 9 29 29 C 1.38211 * 119.99935 * 270.02191 * 3 2 1 30 30 H 1.08997 * 109.47158 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46964 * 299.99931 * 1 2 3 32 32 H 1.09002 * 109.47358 * 59.99781 * 1 2 3 33 33 H 1.09003 * 109.46964 * 240.00069 * 2 1 3 34 34 H 1.09002 * 109.47358 * 120.00219 * 2 1 3 35 35 H 1.08003 * 120.00191 * 0.02562 * 4 3 2 36 36 H 1.07999 * 120.00234 * 179.70451 * 5 4 3 37 37 H 1.08003 * 120.00082 * 179.97438 * 6 5 4 38 38 H 1.09004 * 109.47041 * 29.97696 * 8 7 6 39 39 H 1.09004 * 109.47204 * 149.97339 * 8 7 6 40 40 H 0.97005 * 119.99868 * 359.97438 * 11 9 8 41 41 H 1.08998 * 109.49414 * 301.34001 * 14 12 11 42 42 H 1.08998 * 109.49741 * 61.43453 * 14 12 11 43 43 H 1.09001 * 109.58867 * 185.57493 * 15 14 12 44 44 H 1.09001 * 109.58606 * 65.15855 * 15 14 12 45 45 H 0.97001 * 120.00306 * 179.97438 * 20 19 17 46 46 H 1.09003 * 109.47618 * 179.29159 * 27 25 16 47 47 H 1.09000 * 109.47341 * 299.29263 * 27 25 16 48 48 H 1.08996 * 109.47470 * 59.28926 * 27 25 16 49 49 H 1.08998 * 109.50109 * 298.56875 * 28 12 11 50 50 H 1.09001 * 109.49303 * 58.62912 * 28 12 11 51 51 H 1.07999 * 120.00414 * 359.97438 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2627 2.0725 1.1973 5 6 2.7229 3.3758 1.1974 6 6 2.9533 4.0275 0.0000 7 6 2.7229 3.3761 -1.1970 8 6 2.9746 4.0863 -2.5021 9 6 1.7190 4.7967 -2.9376 10 8 0.7182 4.7322 -2.2557 11 7 1.7080 5.5029 -4.0855 12 6 0.4872 6.1931 -4.5093 13 1 -0.3824 5.6021 -4.2220 14 6 0.4166 7.5648 -3.8344 15 6 -0.8778 8.2692 -4.2527 16 7 -0.9386 8.3148 -5.7199 17 6 -1.1304 9.5026 -6.3737 18 1 -0.7175 9.6485 -7.3610 19 6 -1.8554 10.5193 -5.7676 20 7 -2.6093 10.2564 -4.7212 21 14 -1.7614 12.2608 -6.4368 22 1 -0.8517 12.2916 -7.6102 23 1 -3.1164 12.7063 -6.8499 24 1 -1.2416 13.1687 -5.3829 25 6 -0.7900 7.0617 -6.4724 26 1 -1.6400 6.4095 -6.2716 27 6 -0.7209 7.3677 -7.9699 28 6 0.5034 6.3708 -6.0293 29 6 2.2622 2.0725 -1.1969 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5139 0.8900 35 1 2.0831 1.5633 2.1327 36 1 2.8984 3.8865 2.1327 37 1 3.3125 5.0461 0.0000 38 1 3.7765 4.8130 -2.3715 39 1 3.2630 3.3596 -3.2615 40 1 2.5084 5.5542 -4.6311 41 1 0.4287 7.4386 -2.7518 42 1 1.2730 8.1655 -4.1407 43 1 -0.8866 9.2840 -3.8549 44 1 -1.7351 7.7166 -3.8684 45 1 -3.1158 10.9669 -4.2974 46 1 -0.5981 6.4380 -8.5255 47 1 -1.6420 7.8592 -8.2832 48 1 0.1265 8.0240 -8.1680 49 1 1.3590 6.9827 -6.3150 50 1 0.5779 5.3948 -6.5089 51 1 2.0823 1.5634 -2.1323 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000947460721.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:38:50 Heat of formation + Delta-G solvation = -12.570013 kcal Electronic energy + Delta-G solvation = -28228.173865 eV Core-core repulsion = 24512.890111 eV Total energy + Delta-G solvation = -3715.283754 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.12607 -39.12249 -37.58523 -34.69088 -34.39678 -32.63321 -32.32937 -31.26012 -29.75734 -29.46617 -27.58530 -26.30112 -24.70817 -24.08047 -22.48933 -21.92740 -21.27655 -20.31822 -19.93587 -19.13210 -16.98725 -16.62342 -16.24053 -15.95820 -15.76552 -15.15424 -14.91761 -14.73839 -13.97694 -13.96156 -13.78158 -13.69044 -13.54587 -13.28687 -13.16293 -13.06280 -12.84096 -12.70167 -12.16688 -12.02200 -11.85767 -11.58984 -11.41656 -11.20689 -11.10113 -11.00026 -10.90900 -10.88961 -10.85959 -10.65239 -10.28471 -10.12247 -10.02885 -9.77280 -9.71402 -9.34801 -8.83894 -8.67219 -8.65422 -8.40725 -6.62111 -5.75890 -3.20330 1.26401 1.34182 2.84948 3.34301 3.38379 3.45400 3.47062 3.79756 4.49672 4.49968 4.57755 4.73387 4.94509 5.01470 5.03418 5.12555 5.17780 5.29793 5.32142 5.33755 5.40091 5.43158 5.45261 5.50751 5.61567 5.69776 5.72415 5.79705 5.96512 5.99762 6.01960 6.06447 6.16824 6.28039 6.32548 6.39065 6.43415 6.45808 6.49040 6.53395 6.53957 6.66729 6.81515 6.92711 6.94654 7.04920 7.10961 7.39995 7.69540 7.77061 7.84105 8.47022 8.49032 9.23787 9.87441 10.45017 11.32752 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.019913 B = 0.002353 C = 0.002287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1405.761361 B =11898.986136 C =12240.404375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.083 4.083 3 C -0.083 4.083 4 C -0.121 4.121 5 C -0.116 4.116 6 C -0.109 4.109 7 C -0.058 4.058 8 C -0.105 4.105 9 C 0.509 3.491 10 O -0.530 6.530 11 N -0.727 5.727 12 C 0.151 3.849 13 H 0.080 0.920 14 C -0.146 4.146 15 C 0.176 3.824 16 N -0.587 5.587 17 C -0.251 4.251 18 H 0.070 0.930 19 C 0.002 3.998 20 N -0.901 5.901 21 Si 0.900 3.100 22 H -0.278 1.278 23 H -0.291 1.291 24 H -0.290 1.290 25 C 0.171 3.829 26 H 0.026 0.974 27 C -0.135 4.135 28 C -0.133 4.133 29 C -0.103 4.103 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.058 0.942 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.118 0.882 36 H 0.120 0.880 37 H 0.119 0.881 38 H 0.100 0.900 39 H 0.099 0.901 40 H 0.394 0.606 41 H 0.051 0.949 42 H 0.054 0.946 43 H 0.087 0.913 44 H 0.020 0.980 45 H 0.253 0.747 46 H 0.038 0.962 47 H 0.062 0.938 48 H 0.053 0.947 49 H 0.063 0.937 50 H 0.054 0.946 51 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.700 -18.005 6.578 23.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.120 4.120 3 C -0.083 4.083 4 C -0.139 4.139 5 C -0.134 4.134 6 C -0.127 4.127 7 C -0.059 4.059 8 C -0.145 4.145 9 C 0.295 3.705 10 O -0.406 6.406 11 N -0.377 5.377 12 C 0.048 3.952 13 H 0.098 0.902 14 C -0.186 4.186 15 C 0.049 3.951 16 N -0.311 5.311 17 C -0.380 4.380 18 H 0.088 0.912 19 C -0.197 4.197 20 N -0.546 5.546 21 Si 0.730 3.270 22 H -0.203 1.203 23 H -0.218 1.218 24 H -0.216 1.216 25 C 0.063 3.937 26 H 0.044 0.956 27 C -0.193 4.193 28 C -0.173 4.173 29 C -0.121 4.121 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.077 0.923 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.136 0.864 36 H 0.138 0.862 37 H 0.137 0.863 38 H 0.119 0.881 39 H 0.117 0.883 40 H 0.227 0.773 41 H 0.070 0.930 42 H 0.072 0.928 43 H 0.106 0.894 44 H 0.038 0.962 45 H 0.063 0.937 46 H 0.057 0.943 47 H 0.081 0.919 48 H 0.072 0.928 49 H 0.081 0.919 50 H 0.072 0.928 51 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 12.838 -17.928 7.144 23.179 hybrid contribution 0.377 1.100 -0.473 1.255 sum 13.215 -16.829 6.671 22.413 Atomic orbital electron populations 1.21755 0.94608 1.01525 1.02645 1.20526 0.96341 0.92629 1.02527 1.19824 0.99115 0.96288 0.93115 1.20970 1.00448 0.95127 0.97341 1.21063 0.99634 0.94884 0.97854 1.20966 1.00371 0.99368 0.92016 1.19260 0.99023 0.93918 0.93684 1.20712 0.97280 1.00311 0.96147 1.20434 0.89789 0.79120 0.81184 1.90742 1.35022 1.61583 1.53258 1.46336 1.15607 1.52024 1.23770 1.21017 0.86302 0.93426 0.94485 0.90218 1.22553 1.02054 0.95120 0.98876 1.20723 0.90624 1.00122 0.83609 1.44163 1.83953 1.01871 1.01092 1.19195 1.26862 0.90120 1.01843 0.91236 1.25119 0.96540 0.99193 0.98800 1.70038 1.29350 1.31351 1.23835 0.86269 0.77307 0.85170 0.78289 1.20287 1.21774 1.21647 1.20353 0.92735 0.88924 0.91642 0.95632 1.21791 1.02581 0.99496 0.95397 1.22370 1.01459 0.99808 0.93668 1.20811 0.99374 0.94367 0.97537 0.92523 0.92523 0.92277 0.91194 0.91233 0.86411 0.86161 0.86301 0.88143 0.88254 0.77284 0.92982 0.92753 0.89439 0.96209 0.93711 0.94339 0.91889 0.92774 0.91851 0.92773 0.86447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 9.89 37.16 0.37 -0.92 16 2 C -0.08 -0.69 6.06 -27.88 -0.17 -0.86 16 3 C -0.08 -0.89 5.13 -104.63 -0.54 -1.43 16 4 C -0.12 -1.26 9.70 -39.58 -0.38 -1.64 16 5 C -0.12 -1.25 10.05 -39.58 -0.40 -1.65 16 6 C -0.11 -1.28 9.70 -39.58 -0.38 -1.66 16 7 C -0.06 -0.69 4.37 -104.62 -0.46 -1.15 16 8 C -0.10 -1.06 5.83 -29.04 -0.17 -1.23 16 9 C 0.51 7.38 7.79 -10.99 -0.09 7.29 16 10 O -0.53 -10.20 15.70 5.56 0.09 -10.11 16 11 N -0.73 -9.94 5.08 -53.77 -0.27 -10.21 16 12 C 0.15 2.63 2.42 -67.89 -0.16 2.47 16 13 H 0.08 1.59 7.58 -51.93 -0.39 1.20 16 14 C -0.15 -2.92 5.65 -26.61 -0.15 -3.07 16 15 C 0.18 4.28 5.28 -3.72 -0.02 4.26 16 16 N -0.59 -14.41 2.99 -164.79 -0.49 -14.90 16 17 C -0.25 -6.67 8.58 -15.06 -0.13 -6.80 16 18 H 0.07 1.80 6.23 -52.48 -0.33 1.47 16 19 C 0.00 0.06 4.94 -17.43 -0.09 -0.03 16 20 N -0.90 -26.31 11.23 55.49 0.62 -25.69 16 21 Si 0.90 21.59 29.58 -169.99 -5.03 16.56 16 22 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 23 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 24 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 25 C 0.17 3.48 3.50 -67.60 -0.24 3.25 16 26 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 27 C -0.14 -2.48 7.95 37.16 0.30 -2.18 16 28 C -0.13 -2.21 4.84 -26.61 -0.13 -2.34 16 29 C -0.10 -1.18 9.36 -39.58 -0.37 -1.55 16 30 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.07 0.52 8.09 -51.93 -0.42 0.10 16 34 H 0.07 0.49 8.09 -51.93 -0.42 0.07 16 35 H 0.12 0.98 8.06 -52.48 -0.42 0.56 16 36 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 37 H 0.12 1.25 8.06 -52.48 -0.42 0.83 16 38 H 0.10 0.81 8.09 -51.93 -0.42 0.39 16 39 H 0.10 0.76 8.09 -51.93 -0.42 0.34 16 40 H 0.39 4.10 8.60 -40.82 -0.35 3.75 16 41 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 42 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 43 H 0.09 2.38 6.15 -51.93 -0.32 2.06 16 44 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 46 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 47 H 0.06 1.26 7.67 -51.93 -0.40 0.86 16 48 H 0.05 0.99 7.40 -51.93 -0.38 0.61 16 49 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 50 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 51 H 0.12 1.20 8.06 -52.49 -0.42 0.77 16 LS Contribution 404.86 15.07 6.10 6.10 Total: -1.00 -32.42 404.86 -11.09 -43.51 By element: Atomic # 1 Polarization: 12.89 SS G_CDS: -8.91 Total: 3.99 kcal Atomic # 6 Polarization: -6.04 SS G_CDS: -3.21 Total: -9.24 kcal Atomic # 7 Polarization: -50.66 SS G_CDS: -0.14 Total: -50.81 kcal Atomic # 8 Polarization: -10.20 SS G_CDS: 0.09 Total: -10.11 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.03 Total: 16.56 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -32.42 -11.09 -43.51 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947460721.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.941 kcal (2) G-P(sol) polarization free energy of solvation -32.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds