Wall clock time and date at job start Tue Mar 31 2020 16:38:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50700 * 109.47031 * 2 1 4 4 C 1.38254 * 119.99855 * 90.00114 * 3 2 1 5 5 C 1.38215 * 120.00035 * 180.02562 * 4 3 2 6 6 C 1.38256 * 119.99695 * 359.97438 * 5 4 3 7 7 C 1.38211 * 120.00427 * 0.02741 * 6 5 4 8 8 C 1.50701 * 120.00228 * 180.02562 * 7 6 5 9 9 C 1.50693 * 109.47203 * 269.97721 * 8 7 6 10 10 O 1.21282 * 119.99980 * 359.97438 * 9 8 7 11 11 N 1.34777 * 120.00233 * 180.02562 * 9 8 7 12 12 C 1.46500 * 120.00395 * 179.97438 * 11 9 8 13 13 H 1.08994 * 109.45824 * 324.97193 * 12 11 9 14 14 C 1.53041 * 109.46055 * 84.92926 * 12 11 9 15 15 C 1.53185 * 109.31133 * 181.38458 * 14 12 11 16 16 N 1.46920 * 108.78142 * 305.36428 * 15 14 12 17 17 C 1.36933 * 120.63237 * 233.59039 * 16 15 14 18 18 H 1.08009 * 120.00062 * 150.18053 * 17 16 15 19 19 C 1.38807 * 120.00247 * 330.17992 * 17 16 15 20 20 N 1.31623 * 119.99946 * 344.48542 * 19 17 16 21 21 Si 1.86798 * 120.00541 * 164.48434 * 19 17 16 22 22 H 1.48502 * 109.46825 * 0.02562 * 21 19 17 23 23 H 1.48495 * 109.47412 * 119.99839 * 21 19 17 24 24 H 1.48507 * 109.47234 * 240.00305 * 21 19 17 25 25 C 1.46923 * 118.73659 * 53.60496 * 16 15 14 26 26 H 1.09001 * 109.70491 * 66.25666 * 25 16 15 27 27 C 1.52998 * 109.58744 * 186.60820 * 25 16 15 28 28 C 1.53045 * 109.46113 * 204.99439 * 12 11 9 29 29 C 1.38211 * 119.99935 * 270.02191 * 3 2 1 30 30 H 1.08997 * 109.47158 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46964 * 299.99931 * 1 2 3 32 32 H 1.09002 * 109.47358 * 59.99781 * 1 2 3 33 33 H 1.09003 * 109.46964 * 240.00069 * 2 1 3 34 34 H 1.09002 * 109.47358 * 120.00219 * 2 1 3 35 35 H 1.08003 * 120.00191 * 0.02562 * 4 3 2 36 36 H 1.07999 * 120.00234 * 179.70451 * 5 4 3 37 37 H 1.08003 * 120.00082 * 179.97438 * 6 5 4 38 38 H 1.09004 * 109.47041 * 29.97696 * 8 7 6 39 39 H 1.09004 * 109.47204 * 149.97339 * 8 7 6 40 40 H 0.97005 * 119.99868 * 359.97438 * 11 9 8 41 41 H 1.08998 * 109.49414 * 301.34001 * 14 12 11 42 42 H 1.08998 * 109.49741 * 61.43453 * 14 12 11 43 43 H 1.09001 * 109.58867 * 185.57493 * 15 14 12 44 44 H 1.09001 * 109.58606 * 65.15855 * 15 14 12 45 45 H 0.97001 * 120.00306 * 179.97438 * 20 19 17 46 46 H 1.09003 * 109.47618 * 179.29159 * 27 25 16 47 47 H 1.09000 * 109.47341 * 299.29263 * 27 25 16 48 48 H 1.08996 * 109.47470 * 59.28926 * 27 25 16 49 49 H 1.08998 * 109.50109 * 298.56875 * 28 12 11 50 50 H 1.09001 * 109.49303 * 58.62912 * 28 12 11 51 51 H 1.07999 * 120.00414 * 359.97438 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2627 2.0725 1.1973 5 6 2.7229 3.3758 1.1974 6 6 2.9533 4.0275 0.0000 7 6 2.7229 3.3761 -1.1970 8 6 2.9746 4.0863 -2.5021 9 6 1.7190 4.7967 -2.9376 10 8 0.7182 4.7322 -2.2557 11 7 1.7080 5.5029 -4.0855 12 6 0.4872 6.1931 -4.5093 13 1 -0.3824 5.6021 -4.2220 14 6 0.4166 7.5648 -3.8344 15 6 -0.8778 8.2692 -4.2527 16 7 -0.9386 8.3148 -5.7199 17 6 -1.1304 9.5026 -6.3737 18 1 -0.7175 9.6485 -7.3610 19 6 -1.8554 10.5193 -5.7676 20 7 -2.6093 10.2564 -4.7212 21 14 -1.7614 12.2608 -6.4368 22 1 -0.8517 12.2916 -7.6102 23 1 -3.1164 12.7063 -6.8499 24 1 -1.2416 13.1687 -5.3829 25 6 -0.7900 7.0617 -6.4724 26 1 -1.6400 6.4095 -6.2716 27 6 -0.7209 7.3677 -7.9699 28 6 0.5034 6.3708 -6.0293 29 6 2.2622 2.0725 -1.1969 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5139 0.8900 35 1 2.0831 1.5633 2.1327 36 1 2.8984 3.8865 2.1327 37 1 3.3125 5.0461 0.0000 38 1 3.7765 4.8130 -2.3715 39 1 3.2630 3.3596 -3.2615 40 1 2.5084 5.5542 -4.6311 41 1 0.4287 7.4386 -2.7518 42 1 1.2730 8.1655 -4.1407 43 1 -0.8866 9.2840 -3.8549 44 1 -1.7351 7.7166 -3.8684 45 1 -3.1158 10.9669 -4.2974 46 1 -0.5981 6.4380 -8.5255 47 1 -1.6420 7.8592 -8.2832 48 1 0.1265 8.0240 -8.1680 49 1 1.3590 6.9827 -6.3150 50 1 0.5779 5.3948 -6.5089 51 1 2.0823 1.5634 -2.1323 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000947460721.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:38:49 Heat of formation + Delta-G solvation = -30.658963 kcal Electronic energy + Delta-G solvation = -28228.958260 eV Core-core repulsion = 24512.890111 eV Total energy + Delta-G solvation = -3716.068149 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.20432 -40.17015 -39.12209 -36.08727 -35.29742 -34.22486 -33.47788 -32.81564 -31.31617 -30.37190 -28.65769 -27.79290 -26.56105 -24.80725 -23.91123 -23.18120 -22.49224 -21.51296 -21.22952 -20.60053 -18.42308 -17.86960 -17.50766 -17.18917 -16.78599 -16.70222 -15.88931 -15.81803 -15.70691 -15.51420 -15.04497 -14.79285 -14.68396 -14.53007 -14.42749 -14.31436 -13.90423 -13.87748 -13.33691 -13.00461 -12.95145 -12.86784 -12.72491 -12.66979 -12.61560 -12.58379 -12.35326 -12.14429 -12.04897 -11.83977 -11.72169 -11.69456 -11.62220 -11.49291 -11.30747 -10.80960 -10.56643 -9.96187 -9.66438 -9.48179 -8.64734 -7.84083 -5.31295 0.43915 0.52606 1.46296 1.48101 1.58286 1.72613 2.25924 2.52346 2.92019 3.32354 3.58947 3.69262 3.84456 3.87041 4.00363 4.08037 4.11526 4.24568 4.28205 4.30113 4.39899 4.41085 4.50302 4.57809 4.61676 4.62298 4.70444 4.72459 4.75910 4.79188 4.84968 4.96076 5.00903 5.05799 5.08461 5.12076 5.16724 5.21455 5.24394 5.36988 5.38770 5.49170 5.55316 5.58731 5.61744 5.68332 5.70387 5.73071 5.74456 6.16238 6.43054 6.68224 7.16656 7.38539 7.88462 8.41951 9.23500 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.019913 B = 0.002353 C = 0.002287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1405.761361 B =11898.986136 C =12240.404375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.080 4.080 3 C -0.093 4.093 4 C -0.130 4.130 5 C -0.128 4.128 6 C -0.129 4.129 7 C -0.076 4.076 8 C -0.093 4.093 9 C 0.508 3.492 10 O -0.584 6.584 11 N -0.711 5.711 12 C 0.162 3.838 13 H 0.050 0.950 14 C -0.129 4.129 15 C 0.184 3.816 16 N -0.602 5.602 17 C -0.246 4.246 18 H 0.081 0.919 19 C -0.059 4.059 20 N -0.942 5.942 21 Si 0.964 3.036 22 H -0.260 1.260 23 H -0.296 1.296 24 H -0.295 1.295 25 C 0.158 3.842 26 H 0.008 0.992 27 C -0.126 4.126 28 C -0.116 4.116 29 C -0.119 4.119 30 H 0.074 0.926 31 H 0.048 0.952 32 H 0.039 0.961 33 H 0.080 0.920 34 H 0.085 0.915 35 H 0.136 0.864 36 H 0.136 0.864 37 H 0.124 0.876 38 H 0.127 0.873 39 H 0.132 0.868 40 H 0.416 0.584 41 H 0.040 0.960 42 H 0.063 0.937 43 H 0.052 0.948 44 H -0.017 1.017 45 H 0.246 0.754 46 H 0.077 0.923 47 H 0.038 0.962 48 H 0.056 0.944 49 H 0.077 0.923 50 H 0.089 0.911 51 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.588 -19.593 5.105 26.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.118 4.118 3 C -0.093 4.093 4 C -0.148 4.148 5 C -0.146 4.146 6 C -0.147 4.147 7 C -0.077 4.077 8 C -0.132 4.132 9 C 0.296 3.704 10 O -0.463 6.463 11 N -0.363 5.363 12 C 0.057 3.943 13 H 0.068 0.932 14 C -0.169 4.169 15 C 0.058 3.942 16 N -0.326 5.326 17 C -0.377 4.377 18 H 0.099 0.901 19 C -0.254 4.254 20 N -0.589 5.589 21 Si 0.793 3.207 22 H -0.184 1.184 23 H -0.224 1.224 24 H -0.222 1.222 25 C 0.052 3.948 26 H 0.025 0.975 27 C -0.184 4.184 28 C -0.156 4.156 29 C -0.137 4.137 30 H 0.093 0.907 31 H 0.067 0.933 32 H 0.059 0.941 33 H 0.098 0.902 34 H 0.104 0.896 35 H 0.154 0.846 36 H 0.154 0.846 37 H 0.142 0.858 38 H 0.145 0.855 39 H 0.150 0.850 40 H 0.253 0.747 41 H 0.059 0.941 42 H 0.082 0.918 43 H 0.071 0.929 44 H 0.001 0.999 45 H 0.055 0.945 46 H 0.096 0.904 47 H 0.057 0.943 48 H 0.075 0.925 49 H 0.096 0.904 50 H 0.108 0.892 51 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 15.792 -19.543 5.621 25.748 hybrid contribution -0.568 1.507 0.021 1.611 sum 15.225 -18.036 5.642 24.268 Atomic orbital electron populations 1.21744 0.95071 1.02282 1.01333 1.20564 0.95786 0.91546 1.03854 1.20168 0.98681 0.97431 0.93054 1.21282 1.00093 0.95216 0.98222 1.21369 0.99435 0.95316 0.98439 1.21218 1.01063 0.99882 0.92581 1.19525 0.99369 0.94323 0.94435 1.20732 0.95229 1.01083 0.96164 1.21229 0.90493 0.78387 0.80337 1.90733 1.37399 1.63388 1.54804 1.46034 1.15087 1.51160 1.24029 1.20593 0.87156 0.91447 0.95076 0.93212 1.22283 0.99568 0.96640 0.98392 1.20414 0.91650 0.98042 0.84140 1.44427 1.83999 1.03097 1.01118 1.19590 1.25343 0.90794 1.01931 0.90106 1.25916 0.96910 1.02989 0.99535 1.70218 1.30995 1.32006 1.25693 0.85245 0.77032 0.80516 0.77926 1.18380 1.22389 1.22204 1.20654 0.94194 0.87119 0.92879 0.97474 1.21708 1.01411 1.01354 0.93894 1.22166 0.99391 1.01371 0.92632 1.21069 0.99638 0.94676 0.98316 0.90735 0.93257 0.94144 0.90153 0.89619 0.84567 0.84574 0.85752 0.85472 0.85012 0.74673 0.94085 0.91834 0.92908 0.99892 0.94479 0.90384 0.94271 0.92496 0.90397 0.89209 0.85595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.43 9.89 71.98 0.71 -1.72 16 2 C -0.08 -1.21 6.06 29.85 0.18 -1.03 16 3 C -0.09 -1.89 5.13 -19.87 -0.10 -1.99 16 4 C -0.13 -2.58 9.70 22.27 0.22 -2.37 16 5 C -0.13 -2.67 10.05 22.27 0.22 -2.44 16 6 C -0.13 -2.93 9.70 22.27 0.22 -2.72 16 7 C -0.08 -1.70 4.37 -19.87 -0.09 -1.79 16 8 C -0.09 -1.63 5.83 29.10 0.17 -1.46 16 9 C 0.51 13.91 7.79 87.65 0.68 14.59 16 10 O -0.58 -22.68 15.70 -3.03 -0.05 -22.72 16 11 N -0.71 -17.65 5.08 -442.41 -2.25 -19.89 16 12 C 0.16 5.50 2.42 45.02 0.11 5.61 16 13 H 0.05 2.02 7.58 -2.39 -0.02 2.00 16 14 C -0.13 -5.21 5.65 30.67 0.17 -5.04 16 15 C 0.18 9.43 5.28 86.36 0.46 9.88 16 16 N -0.60 -29.99 2.99 -675.27 -2.02 -32.00 16 17 C -0.25 -13.18 8.58 84.03 0.72 -12.46 16 18 H 0.08 4.09 6.23 -2.91 -0.02 4.07 16 19 C -0.06 -3.32 4.94 84.86 0.42 -2.90 16 20 N -0.94 -57.56 11.23 21.65 0.24 -57.32 16 21 Si 0.96 45.11 29.58 68.60 2.03 47.14 16 22 H -0.26 -11.26 7.11 99.48 0.71 -10.55 16 23 H -0.30 -14.03 7.11 99.48 0.71 -13.33 16 24 H -0.29 -13.92 7.11 99.48 0.71 -13.21 16 25 C 0.16 6.28 3.50 44.97 0.16 6.43 16 26 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 27 C -0.13 -4.33 7.95 71.98 0.57 -3.76 16 28 C -0.12 -3.52 4.84 30.67 0.15 -3.38 16 29 C -0.12 -2.60 9.36 22.27 0.21 -2.39 16 30 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.08 1.04 8.09 -2.39 -0.02 1.02 16 34 H 0.09 1.01 8.09 -2.39 -0.02 0.99 16 35 H 0.14 2.07 8.06 -2.91 -0.02 2.04 16 36 H 0.14 2.24 8.06 -2.91 -0.02 2.22 16 37 H 0.12 2.53 8.06 -2.91 -0.02 2.51 16 38 H 0.13 1.59 8.09 -2.38 -0.02 1.57 16 39 H 0.13 1.48 8.09 -2.38 -0.02 1.46 16 40 H 0.42 6.88 8.60 -92.70 -0.80 6.08 16 41 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 42 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 43 H 0.05 3.04 6.15 -2.39 -0.01 3.03 16 44 H -0.02 -0.97 8.14 -2.39 -0.02 -0.99 16 45 H 0.25 14.64 8.31 -92.71 -0.77 13.87 16 46 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 47 H 0.04 1.51 7.67 -2.39 -0.02 1.49 16 48 H 0.06 1.91 7.40 -2.39 -0.02 1.90 16 49 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 50 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 51 H 0.13 2.39 8.06 -2.91 -0.02 2.37 16 Total: -1.00 -75.06 404.86 3.24 -71.82 By element: Atomic # 1 Polarization: 21.81 SS G_CDS: 0.10 Total: 21.91 kcal Atomic # 6 Polarization: -14.11 SS G_CDS: 5.18 Total: -8.94 kcal Atomic # 7 Polarization: -105.19 SS G_CDS: -4.02 Total: -109.21 kcal Atomic # 8 Polarization: -22.68 SS G_CDS: -0.05 Total: -22.72 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 2.03 Total: 47.14 kcal Total: -75.06 3.24 -71.82 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947460721.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.162 kcal (2) G-P(sol) polarization free energy of solvation -75.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds