Wall clock time and date at job start Tue Mar 31 2020 16:38:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50704 * 109.46979 * 2 1 4 4 C 1.38231 * 120.00176 * 269.72935 * 3 2 1 5 5 C 1.38229 * 120.00091 * 179.78807 * 4 3 2 6 6 C 1.38227 * 120.00291 * 0.44252 * 5 4 3 7 7 C 1.50696 * 120.00478 * 179.83394 * 6 5 4 8 8 C 1.50700 * 109.47278 * 269.97506 * 7 6 5 9 9 O 1.21285 * 119.99604 * 0.02562 * 8 7 6 10 10 N 1.34772 * 119.99904 * 179.97438 * 8 7 6 11 11 C 1.46505 * 119.99570 * 180.02562 * 10 8 7 12 12 H 1.09000 * 109.46096 * 324.97350 * 11 10 8 13 13 C 1.53042 * 109.46237 * 84.93668 * 11 10 8 14 14 C 1.53190 * 109.31296 * 181.38693 * 13 11 10 15 15 N 1.46928 * 108.77333 * 305.36192 * 14 13 11 16 16 C 1.36942 * 120.62726 * 233.59196 * 15 14 13 17 17 H 1.08000 * 119.99816 * 151.85003 * 16 15 14 18 18 C 1.38808 * 119.99945 * 331.84375 * 16 15 14 19 19 N 1.31621 * 120.00218 * 343.06539 * 18 16 15 20 20 Si 1.86798 * 120.00007 * 163.06981 * 18 16 15 21 21 H 1.48500 * 109.47031 * 359.97438 * 20 18 16 22 22 H 1.48499 * 109.47466 * 119.99747 * 20 18 16 23 23 H 1.48500 * 109.47077 * 240.00003 * 20 18 16 24 24 C 1.46927 * 118.74040 * 53.60846 * 15 14 13 25 25 H 1.09004 * 109.70365 * 186.53362 * 24 15 14 26 26 C 1.52997 * 109.58404 * 66.18070 * 24 15 14 27 27 C 1.53049 * 109.45713 * 205.00137 * 11 10 8 28 28 C 1.38239 * 119.99918 * 359.80862 * 6 5 4 29 29 C 1.38233 * 119.99731 * 359.97438 * 28 6 5 30 30 H 1.09000 * 109.47469 * 59.99837 * 1 2 3 31 31 H 1.09004 * 109.47097 * 299.99569 * 1 2 3 32 32 H 1.09000 * 109.47070 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.47206 * 119.99681 * 2 1 3 34 34 H 1.08994 * 109.46649 * 240.00199 * 2 1 3 35 35 H 1.08008 * 119.99961 * 359.97438 * 4 3 2 36 36 H 1.08006 * 120.00093 * 180.27309 * 5 4 3 37 37 H 1.08997 * 109.47161 * 29.97447 * 7 6 5 38 38 H 1.09007 * 109.47461 * 149.97427 * 7 6 5 39 39 H 0.96991 * 120.00706 * 0.02562 * 10 8 7 40 40 H 1.09004 * 109.49153 * 301.33160 * 13 11 10 41 41 H 1.08998 * 109.49551 * 61.42730 * 13 11 10 42 42 H 1.08999 * 109.58589 * 185.57858 * 14 13 11 43 43 H 1.08995 * 109.70954 * 65.21738 * 14 13 11 44 44 H 0.97001 * 119.99789 * 179.97438 * 19 18 16 45 45 H 1.08996 * 109.47176 * 300.70933 * 26 24 15 46 46 H 1.09000 * 109.47255 * 60.71159 * 26 24 15 47 47 H 1.08999 * 109.47295 * 180.70986 * 26 24 15 48 48 H 1.08993 * 109.49646 * 298.56275 * 27 11 10 49 49 H 1.09005 * 109.49574 * 58.63377 * 27 11 10 50 50 H 1.08000 * 120.00178 * 180.02562 * 28 6 5 51 51 H 1.08004 * 120.00043 * 179.97438 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2680 2.0706 -1.1971 5 6 2.7246 3.3754 -1.1971 6 6 2.9542 4.0273 0.0000 7 6 3.4555 5.4485 0.0000 8 6 4.9625 5.4496 0.0011 9 8 5.5696 4.3996 0.0012 10 7 5.6354 6.6173 0.0008 11 6 7.1005 6.6183 0.0012 12 1 7.4640 5.7772 0.5916 13 6 7.6109 6.4906 -1.4359 14 6 9.1425 6.4572 -1.4285 15 7 9.6379 7.6423 -0.7152 16 6 10.5460 8.4817 -1.3035 17 1 10.5732 9.5258 -1.0288 18 6 11.4317 7.9905 -2.2527 19 7 11.6373 6.6942 -2.3526 20 14 12.3319 9.1690 -3.3885 21 1 11.9280 10.5634 -3.0758 22 1 13.7967 9.0221 -3.1942 23 1 11.9860 8.8585 -4.7989 24 6 9.1407 7.9096 0.6413 25 1 9.5102 8.8760 0.9844 26 6 9.6225 6.8101 1.5900 27 6 7.6092 7.9267 0.6107 28 6 2.7234 3.3758 1.1972 29 6 2.2626 2.0726 1.1972 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 0.5138 0.8901 32 1 -0.3633 -1.0277 0.0005 33 1 1.8934 -0.5138 0.8900 34 1 1.8932 -0.5138 -0.8900 35 1 2.0926 1.5599 -2.1325 36 1 2.9046 3.8845 -2.1324 37 1 3.0924 5.9618 -0.8903 38 1 3.0912 5.9623 0.8896 39 1 5.1500 7.4569 0.0002 40 1 7.2291 5.5699 -1.8771 41 1 7.2684 7.3442 -2.0208 42 1 9.5131 6.4662 -2.4535 43 1 9.4880 5.5555 -0.9229 44 1 12.2559 6.3510 -3.0162 45 1 9.2563 5.8442 1.2424 46 1 10.7123 6.7996 1.6103 47 1 9.2423 7.0034 2.5930 48 1 7.2668 8.7668 0.0065 49 1 7.2257 8.0284 1.6260 50 1 2.9024 3.8853 2.1325 51 1 2.0827 1.5634 2.1325 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000947753213.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:38:53 Heat of formation + Delta-G solvation = -12.637769 kcal Electronic energy + Delta-G solvation = -28144.316303 eV Core-core repulsion = 24429.029611 eV Total energy + Delta-G solvation = -3715.286692 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.12295 -39.16284 -37.67311 -34.83201 -34.35498 -32.54143 -31.58354 -30.99285 -30.65011 -29.51099 -27.44085 -26.68489 -24.33595 -23.48740 -22.82475 -21.99663 -21.71873 -20.74019 -20.07947 -18.38502 -17.16840 -16.54833 -16.35473 -15.96254 -15.72578 -15.15128 -14.71336 -14.66593 -13.97256 -13.92593 -13.86081 -13.72281 -13.63273 -13.41747 -13.07066 -12.99092 -12.71235 -12.55029 -12.24447 -12.14173 -11.99581 -11.84752 -11.40537 -11.38138 -11.06851 -10.98641 -10.94729 -10.90508 -10.78644 -10.59520 -10.32327 -10.16053 -10.00850 -9.70240 -9.67897 -9.32275 -8.95534 -8.67074 -8.57673 -8.39073 -6.67057 -5.77294 -3.20263 1.23577 1.37138 2.85630 3.34876 3.38337 3.45379 3.47227 3.80216 4.49353 4.50126 4.62882 4.68091 4.86426 4.92429 5.03350 5.10440 5.17513 5.28843 5.31741 5.33830 5.40467 5.42201 5.43604 5.50586 5.62887 5.63713 5.71631 5.81914 5.87101 5.99251 6.00902 6.04895 6.09228 6.27837 6.33459 6.34871 6.46227 6.49378 6.52261 6.53413 6.60053 6.68697 6.81588 6.91743 6.94508 6.98934 7.17631 7.40973 7.70744 7.78074 7.81377 8.46438 8.48793 9.22588 9.86069 10.43013 11.30862 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.022588 B = 0.002233 C = 0.002152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1239.293146 B =12537.303402 C =13007.639430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.085 4.085 3 C -0.086 4.086 4 C -0.117 4.117 5 C -0.101 4.101 6 C -0.066 4.066 7 C -0.104 4.104 8 C 0.509 3.491 9 O -0.531 6.531 10 N -0.727 5.727 11 C 0.150 3.850 12 H 0.084 0.916 13 C -0.146 4.146 14 C 0.174 3.826 15 N -0.585 5.585 16 C -0.252 4.252 17 H 0.066 0.934 18 C 0.002 3.998 19 N -0.900 5.900 20 Si 0.901 3.099 21 H -0.278 1.278 22 H -0.291 1.291 23 H -0.289 1.289 24 C 0.170 3.830 25 H 0.065 0.935 26 C -0.163 4.163 27 C -0.132 4.132 28 C -0.102 4.102 29 C -0.118 4.118 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.056 0.944 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.119 0.881 36 H 0.119 0.881 37 H 0.100 0.900 38 H 0.099 0.901 39 H 0.394 0.606 40 H 0.051 0.949 41 H 0.054 0.946 42 H 0.088 0.912 43 H 0.021 0.979 44 H 0.253 0.747 45 H 0.049 0.951 46 H 0.054 0.946 47 H 0.036 0.964 48 H 0.062 0.938 49 H 0.055 0.945 50 H 0.119 0.881 51 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.825 -6.076 6.177 24.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.123 4.123 3 C -0.086 4.086 4 C -0.135 4.135 5 C -0.119 4.119 6 C -0.066 4.066 7 C -0.144 4.144 8 C 0.295 3.705 9 O -0.407 6.407 10 N -0.378 5.378 11 C 0.047 3.953 12 H 0.102 0.898 13 C -0.186 4.186 14 C 0.047 3.953 15 N -0.306 5.306 16 C -0.381 4.381 17 H 0.084 0.916 18 C -0.196 4.196 19 N -0.544 5.544 20 Si 0.731 3.269 21 H -0.203 1.203 22 H -0.218 1.218 23 H -0.216 1.216 24 C 0.061 3.939 25 H 0.083 0.917 26 C -0.222 4.222 27 C -0.172 4.172 28 C -0.121 4.121 29 C -0.136 4.136 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.137 0.863 36 H 0.137 0.863 37 H 0.118 0.882 38 H 0.117 0.883 39 H 0.227 0.773 40 H 0.070 0.930 41 H 0.072 0.928 42 H 0.106 0.894 43 H 0.039 0.961 44 H 0.063 0.937 45 H 0.068 0.932 46 H 0.074 0.926 47 H 0.055 0.945 48 H 0.081 0.919 49 H 0.073 0.927 50 H 0.137 0.863 51 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -22.239 -6.916 6.055 24.063 hybrid contribution 0.376 0.967 -0.659 1.229 sum -21.863 -5.949 5.396 23.291 Atomic orbital electron populations 1.21744 0.94845 1.01548 1.02148 1.20537 0.96029 0.92853 1.02842 1.19856 0.99403 0.96074 0.93271 1.20946 1.00323 0.94752 0.97454 1.20962 0.98673 0.94895 0.97419 1.19263 0.98957 0.94818 0.93565 1.20707 0.93258 0.95505 1.04942 1.20446 0.89322 0.84172 0.76606 1.90741 1.70080 1.31221 1.48630 1.46348 1.08329 1.07908 1.75197 1.21080 0.77111 0.99058 0.98075 0.89802 1.22553 1.00894 1.00327 0.94858 1.20734 0.86711 0.88548 0.99264 1.44168 1.48292 1.28158 1.10018 1.19198 1.09690 0.90157 1.19099 0.91647 1.25066 0.97179 0.95695 1.01695 1.70048 1.37348 1.11216 1.35774 0.86251 0.79236 0.80533 0.80895 1.20292 1.21781 1.21621 1.20438 0.89792 0.96850 0.86774 0.91686 1.22303 1.01686 1.00537 0.97661 1.22296 0.99396 0.96312 0.99186 1.20937 0.98878 0.94914 0.97324 1.20931 1.00447 0.94772 0.97414 0.92589 0.92622 0.92526 0.91115 0.91083 0.86273 0.86250 0.88192 0.88266 0.77311 0.93016 0.92767 0.89389 0.96088 0.93676 0.93197 0.92641 0.94540 0.91934 0.92670 0.86340 0.86323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 9.89 37.16 0.37 -0.60 16 2 C -0.09 -0.68 6.07 -27.88 -0.17 -0.85 16 3 C -0.09 -0.89 5.13 -104.62 -0.54 -1.43 16 4 C -0.12 -1.27 9.70 -39.59 -0.38 -1.65 16 5 C -0.10 -1.18 9.70 -39.59 -0.38 -1.57 16 6 C -0.07 -0.77 4.37 -104.63 -0.46 -1.23 16 7 C -0.10 -1.06 5.83 -29.04 -0.17 -1.23 16 8 C 0.51 7.37 7.79 -10.99 -0.09 7.29 16 9 O -0.53 -10.22 15.70 5.55 0.09 -10.13 16 10 N -0.73 -9.94 5.08 -53.76 -0.27 -10.22 16 11 C 0.15 2.60 2.21 -67.88 -0.15 2.45 16 12 H 0.08 1.66 5.94 -51.93 -0.31 1.35 16 13 C -0.15 -2.93 5.65 -26.61 -0.15 -3.08 16 14 C 0.17 4.21 4.88 -3.71 -0.02 4.20 16 15 N -0.58 -14.29 2.70 -164.78 -0.45 -14.73 16 16 C -0.25 -6.79 9.59 -15.06 -0.14 -6.93 16 17 H 0.07 1.73 7.89 -52.49 -0.41 1.32 16 18 C 0.00 0.07 4.92 -17.43 -0.09 -0.02 16 19 N -0.90 -26.19 11.20 55.49 0.62 -25.57 16 20 Si 0.90 21.62 29.59 -169.99 -5.03 16.59 16 21 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 22 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 23 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 24 C 0.17 3.43 3.29 -67.60 -0.22 3.21 16 25 H 0.06 1.30 7.94 -51.93 -0.41 0.89 16 26 C -0.16 -3.15 9.02 37.16 0.34 -2.82 16 27 C -0.13 -2.18 5.02 -26.61 -0.13 -2.32 16 28 C -0.10 -1.16 9.70 -39.58 -0.38 -1.55 16 29 C -0.12 -1.25 9.70 -39.58 -0.38 -1.63 16 30 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.07 0.52 8.09 -51.93 -0.42 0.10 16 34 H 0.07 0.53 8.08 -51.93 -0.42 0.11 16 35 H 0.12 1.07 8.06 -52.48 -0.42 0.65 16 36 H 0.12 1.25 8.06 -52.48 -0.42 0.83 16 37 H 0.10 0.81 8.09 -51.93 -0.42 0.39 16 38 H 0.10 0.76 8.09 -51.93 -0.42 0.34 16 39 H 0.39 4.09 8.60 -40.82 -0.35 3.74 16 40 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 41 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 42 H 0.09 2.40 6.06 -51.93 -0.31 2.08 16 43 H 0.02 0.55 7.49 -51.93 -0.39 0.16 16 44 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 45 H 0.05 1.01 5.72 -51.93 -0.30 0.72 16 46 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 47 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 48 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 49 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 50 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 51 H 0.12 1.02 8.06 -52.48 -0.42 0.60 16 LS Contribution 403.84 15.07 6.09 6.09 Total: -1.00 -32.39 403.84 -10.91 -43.30 By element: Atomic # 1 Polarization: 13.22 SS G_CDS: -8.80 Total: 4.42 kcal Atomic # 6 Polarization: -6.61 SS G_CDS: -3.16 Total: -9.76 kcal Atomic # 7 Polarization: -50.42 SS G_CDS: -0.10 Total: -50.51 kcal Atomic # 8 Polarization: -10.22 SS G_CDS: 0.09 Total: -10.13 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.03 Total: 16.59 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -32.39 -10.91 -43.30 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947753213.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.663 kcal (2) G-P(sol) polarization free energy of solvation -32.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.301 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds