Wall clock time and date at job start Tue Mar 31 2020 16:38:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50704 * 109.46979 * 2 1 4 4 C 1.38231 * 120.00176 * 269.72935 * 3 2 1 5 5 C 1.38229 * 120.00091 * 179.78807 * 4 3 2 6 6 C 1.38227 * 120.00291 * 0.44252 * 5 4 3 7 7 C 1.50696 * 120.00478 * 179.83394 * 6 5 4 8 8 C 1.50700 * 109.47278 * 269.97506 * 7 6 5 9 9 O 1.21285 * 119.99604 * 0.02562 * 8 7 6 10 10 N 1.34772 * 119.99904 * 179.97438 * 8 7 6 11 11 C 1.46505 * 119.99570 * 180.02562 * 10 8 7 12 12 H 1.09000 * 109.46096 * 324.97350 * 11 10 8 13 13 C 1.53042 * 109.46237 * 84.93668 * 11 10 8 14 14 C 1.53190 * 109.31296 * 181.38693 * 13 11 10 15 15 N 1.46928 * 108.77333 * 305.36192 * 14 13 11 16 16 C 1.36942 * 120.62726 * 233.59196 * 15 14 13 17 17 H 1.08000 * 119.99816 * 151.85003 * 16 15 14 18 18 C 1.38808 * 119.99945 * 331.84375 * 16 15 14 19 19 N 1.31621 * 120.00218 * 343.06539 * 18 16 15 20 20 Si 1.86798 * 120.00007 * 163.06981 * 18 16 15 21 21 H 1.48500 * 109.47031 * 359.97438 * 20 18 16 22 22 H 1.48499 * 109.47466 * 119.99747 * 20 18 16 23 23 H 1.48500 * 109.47077 * 240.00003 * 20 18 16 24 24 C 1.46927 * 118.74040 * 53.60846 * 15 14 13 25 25 H 1.09004 * 109.70365 * 186.53362 * 24 15 14 26 26 C 1.52997 * 109.58404 * 66.18070 * 24 15 14 27 27 C 1.53049 * 109.45713 * 205.00137 * 11 10 8 28 28 C 1.38239 * 119.99918 * 359.80862 * 6 5 4 29 29 C 1.38233 * 119.99731 * 359.97438 * 28 6 5 30 30 H 1.09000 * 109.47469 * 59.99837 * 1 2 3 31 31 H 1.09004 * 109.47097 * 299.99569 * 1 2 3 32 32 H 1.09000 * 109.47070 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.47206 * 119.99681 * 2 1 3 34 34 H 1.08994 * 109.46649 * 240.00199 * 2 1 3 35 35 H 1.08008 * 119.99961 * 359.97438 * 4 3 2 36 36 H 1.08006 * 120.00093 * 180.27309 * 5 4 3 37 37 H 1.08997 * 109.47161 * 29.97447 * 7 6 5 38 38 H 1.09007 * 109.47461 * 149.97427 * 7 6 5 39 39 H 0.96991 * 120.00706 * 0.02562 * 10 8 7 40 40 H 1.09004 * 109.49153 * 301.33160 * 13 11 10 41 41 H 1.08998 * 109.49551 * 61.42730 * 13 11 10 42 42 H 1.08999 * 109.58589 * 185.57858 * 14 13 11 43 43 H 1.08995 * 109.70954 * 65.21738 * 14 13 11 44 44 H 0.97001 * 119.99789 * 179.97438 * 19 18 16 45 45 H 1.08996 * 109.47176 * 300.70933 * 26 24 15 46 46 H 1.09000 * 109.47255 * 60.71159 * 26 24 15 47 47 H 1.08999 * 109.47295 * 180.70986 * 26 24 15 48 48 H 1.08993 * 109.49646 * 298.56275 * 27 11 10 49 49 H 1.09005 * 109.49574 * 58.63377 * 27 11 10 50 50 H 1.08000 * 120.00178 * 180.02562 * 28 6 5 51 51 H 1.08004 * 120.00043 * 179.97438 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2680 2.0706 -1.1971 5 6 2.7246 3.3754 -1.1971 6 6 2.9542 4.0273 0.0000 7 6 3.4555 5.4485 0.0000 8 6 4.9625 5.4496 0.0011 9 8 5.5696 4.3996 0.0012 10 7 5.6354 6.6173 0.0008 11 6 7.1005 6.6183 0.0012 12 1 7.4640 5.7772 0.5916 13 6 7.6109 6.4906 -1.4359 14 6 9.1425 6.4572 -1.4285 15 7 9.6379 7.6423 -0.7152 16 6 10.5460 8.4817 -1.3035 17 1 10.5732 9.5258 -1.0288 18 6 11.4317 7.9905 -2.2527 19 7 11.6373 6.6942 -2.3526 20 14 12.3319 9.1690 -3.3885 21 1 11.9280 10.5634 -3.0758 22 1 13.7967 9.0221 -3.1942 23 1 11.9860 8.8585 -4.7989 24 6 9.1407 7.9096 0.6413 25 1 9.5102 8.8760 0.9844 26 6 9.6225 6.8101 1.5900 27 6 7.6092 7.9267 0.6107 28 6 2.7234 3.3758 1.1972 29 6 2.2626 2.0726 1.1972 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 0.5138 0.8901 32 1 -0.3633 -1.0277 0.0005 33 1 1.8934 -0.5138 0.8900 34 1 1.8932 -0.5138 -0.8900 35 1 2.0926 1.5599 -2.1325 36 1 2.9046 3.8845 -2.1324 37 1 3.0924 5.9618 -0.8903 38 1 3.0912 5.9623 0.8896 39 1 5.1500 7.4569 0.0002 40 1 7.2291 5.5699 -1.8771 41 1 7.2684 7.3442 -2.0208 42 1 9.5131 6.4662 -2.4535 43 1 9.4880 5.5555 -0.9229 44 1 12.2559 6.3510 -3.0162 45 1 9.2563 5.8442 1.2424 46 1 10.7123 6.7996 1.6103 47 1 9.2423 7.0034 2.5930 48 1 7.2668 8.7668 0.0065 49 1 7.2257 8.0284 1.6260 50 1 2.9024 3.8853 2.1325 51 1 2.0827 1.5634 2.1325 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000947753213.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:38:52 Heat of formation + Delta-G solvation = -30.453951 kcal Electronic energy + Delta-G solvation = -28145.088871 eV Core-core repulsion = 24429.029611 eV Total energy + Delta-G solvation = -3716.059259 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.20843 -40.20404 -39.16642 -36.02237 -35.45516 -34.30128 -32.70572 -32.12893 -31.78627 -31.12547 -28.75037 -27.85773 -26.15038 -24.39143 -23.68076 -23.62197 -23.15159 -21.70692 -21.15332 -20.03638 -18.82911 -17.80787 -17.55633 -16.92499 -16.77220 -16.49955 -15.98267 -15.82219 -15.55864 -15.50371 -14.96866 -14.67826 -14.57759 -14.54293 -14.33778 -14.15541 -14.13044 -13.89957 -13.71238 -13.16478 -13.00954 -12.90719 -12.82691 -12.67151 -12.56197 -12.52224 -12.27312 -12.05809 -12.02010 -11.97681 -11.76086 -11.69203 -11.64404 -11.48051 -11.13139 -10.78551 -10.56487 -9.93374 -9.77183 -9.38959 -8.68300 -7.85717 -5.31275 0.42038 0.55225 1.46030 1.48027 1.58379 1.74417 2.28343 2.51590 2.92771 3.30052 3.61937 3.71975 3.84514 3.90644 3.96246 4.10118 4.15662 4.18188 4.23048 4.31268 4.45574 4.50054 4.51519 4.52385 4.60331 4.63645 4.70761 4.74990 4.77728 4.79547 4.84526 4.93324 5.06152 5.08901 5.10197 5.14635 5.16512 5.21450 5.24836 5.33880 5.38790 5.44423 5.51422 5.53959 5.64337 5.68633 5.70593 5.75465 5.76002 6.16297 6.41051 6.70208 7.15646 7.40396 7.87751 8.40246 9.20931 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.022588 B = 0.002233 C = 0.002152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1239.293146 B =12537.303402 C =13007.639430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.085 4.085 3 C -0.093 4.093 4 C -0.131 4.131 5 C -0.120 4.120 6 C -0.084 4.084 7 C -0.092 4.092 8 C 0.508 3.492 9 O -0.584 6.584 10 N -0.713 5.713 11 C 0.162 3.838 12 H 0.058 0.942 13 C -0.131 4.131 14 C 0.185 3.815 15 N -0.599 5.599 16 C -0.255 4.255 17 H 0.073 0.927 18 C -0.055 4.055 19 N -0.938 5.938 20 Si 0.966 3.034 21 H -0.262 1.262 22 H -0.296 1.296 23 H -0.294 1.294 24 C 0.159 3.841 25 H 0.071 0.929 26 C -0.153 4.153 27 C -0.117 4.117 28 C -0.116 4.116 29 C -0.129 4.129 30 H 0.052 0.948 31 H 0.054 0.946 32 H 0.069 0.931 33 H 0.076 0.924 34 H 0.073 0.927 35 H 0.131 0.869 36 H 0.125 0.875 37 H 0.126 0.874 38 H 0.132 0.868 39 H 0.415 0.585 40 H 0.039 0.961 41 H 0.061 0.939 42 H 0.051 0.949 43 H -0.013 1.013 44 H 0.247 0.753 45 H 0.031 0.969 46 H 0.027 0.973 47 H 0.075 0.925 48 H 0.074 0.926 49 H 0.092 0.908 50 H 0.131 0.869 51 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.379 -4.369 7.381 26.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.123 4.123 3 C -0.093 4.093 4 C -0.149 4.149 5 C -0.138 4.138 6 C -0.085 4.085 7 C -0.132 4.132 8 C 0.295 3.705 9 O -0.463 6.463 10 N -0.364 5.364 11 C 0.057 3.943 12 H 0.076 0.924 13 C -0.171 4.171 14 C 0.058 3.942 15 N -0.321 5.321 16 C -0.385 4.385 17 H 0.091 0.909 18 C -0.250 4.250 19 N -0.584 5.584 20 Si 0.794 3.206 21 H -0.186 1.186 22 H -0.223 1.223 23 H -0.221 1.221 24 C 0.052 3.948 25 H 0.089 0.911 26 C -0.212 4.212 27 C -0.156 4.156 28 C -0.134 4.134 29 C -0.147 4.147 30 H 0.071 0.929 31 H 0.074 0.926 32 H 0.088 0.912 33 H 0.095 0.905 34 H 0.092 0.908 35 H 0.149 0.851 36 H 0.143 0.857 37 H 0.144 0.856 38 H 0.150 0.850 39 H 0.253 0.747 40 H 0.058 0.942 41 H 0.079 0.921 42 H 0.069 0.931 43 H 0.005 0.995 44 H 0.056 0.944 45 H 0.051 0.949 46 H 0.046 0.954 47 H 0.093 0.907 48 H 0.093 0.907 49 H 0.110 0.890 50 H 0.149 0.851 51 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -24.848 -5.152 7.288 26.402 hybrid contribution 1.159 0.376 -0.979 1.563 sum -23.689 -4.776 6.309 24.976 Atomic orbital electron populations 1.21711 0.93754 1.02403 1.02000 1.20587 0.96922 0.91477 1.03271 1.20183 0.98871 0.97165 0.93107 1.21213 1.00463 0.94880 0.98366 1.21208 0.99145 0.95490 0.97917 1.19517 0.99420 0.95856 0.93689 1.20723 0.89374 0.95310 1.07753 1.21232 0.91089 0.83226 0.74908 1.90732 1.71517 1.33167 1.50932 1.46060 1.06608 1.09071 1.74693 1.20653 0.79438 0.98802 0.95388 0.92357 1.22304 0.97532 0.99958 0.97300 1.20396 0.89502 0.87580 0.96697 1.44374 1.48173 1.27534 1.12028 1.19576 1.09298 0.90838 1.18778 0.90927 1.25844 0.98634 0.97026 1.03539 1.70221 1.38490 1.13123 1.36562 0.85225 0.77517 0.79309 0.78508 1.18582 1.22304 1.22073 1.20730 0.92432 0.97089 0.84571 0.91098 1.22187 0.99884 0.99502 0.99661 1.22122 0.96148 0.95828 1.01527 1.21223 0.98890 0.95402 0.97853 1.21234 1.00288 0.94911 0.98287 0.92851 0.92647 0.91169 0.90545 0.90810 0.85095 0.85744 0.85627 0.84962 0.74748 0.94179 0.92054 0.93059 0.99455 0.94366 0.94943 0.95357 0.90658 0.90686 0.88997 0.85079 0.84698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.68 9.89 71.98 0.71 -0.97 16 2 C -0.09 -1.26 6.07 29.85 0.18 -1.08 16 3 C -0.09 -1.87 5.13 -19.86 -0.10 -1.97 16 4 C -0.13 -2.80 9.70 22.27 0.22 -2.58 16 5 C -0.12 -2.71 9.70 22.27 0.22 -2.50 16 6 C -0.08 -1.87 4.37 -19.87 -0.09 -1.95 16 7 C -0.09 -1.60 5.83 29.10 0.17 -1.43 16 8 C 0.51 13.75 7.79 87.66 0.68 14.43 16 9 O -0.58 -22.44 15.70 -3.04 -0.05 -22.49 16 10 N -0.71 -17.48 5.08 -442.38 -2.25 -19.73 16 11 C 0.16 5.38 2.21 45.02 0.10 5.48 16 12 H 0.06 2.30 5.94 -2.39 -0.01 2.29 16 13 C -0.13 -5.27 5.65 30.67 0.17 -5.10 16 14 C 0.18 9.36 4.88 86.36 0.42 9.78 16 15 N -0.60 -29.55 2.70 -675.23 -1.82 -31.38 16 16 C -0.25 -13.80 9.59 84.03 0.81 -12.99 16 17 H 0.07 3.77 7.89 -2.91 -0.02 3.75 16 18 C -0.06 -3.12 4.92 84.86 0.42 -2.70 16 19 N -0.94 -56.94 11.20 21.65 0.24 -56.70 16 20 Si 0.97 45.17 29.59 68.60 2.03 47.20 16 21 H -0.26 -11.42 7.11 99.48 0.71 -10.71 16 22 H -0.30 -13.96 7.11 99.48 0.71 -13.25 16 23 H -0.29 -13.81 7.11 99.48 0.71 -13.11 16 24 C 0.16 6.19 3.29 44.97 0.15 6.34 16 25 H 0.07 2.69 7.94 -2.39 -0.02 2.67 16 26 C -0.15 -5.86 9.02 71.98 0.65 -5.22 16 27 C -0.12 -3.49 5.02 30.67 0.15 -3.34 16 28 C -0.12 -2.47 9.70 22.27 0.22 -2.25 16 29 C -0.13 -2.61 9.70 22.27 0.22 -2.40 16 30 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.05 0.66 8.14 -2.38 -0.02 0.64 16 32 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 33 H 0.08 1.03 8.09 -2.39 -0.02 1.01 16 34 H 0.07 1.04 8.08 -2.39 -0.02 1.02 16 35 H 0.13 2.31 8.06 -2.91 -0.02 2.29 16 36 H 0.12 2.54 8.06 -2.91 -0.02 2.52 16 37 H 0.13 1.56 8.09 -2.39 -0.02 1.54 16 38 H 0.13 1.44 8.09 -2.38 -0.02 1.42 16 39 H 0.42 6.81 8.60 -92.72 -0.80 6.01 16 40 H 0.04 1.69 8.14 -2.38 -0.02 1.67 16 41 H 0.06 2.37 8.14 -2.39 -0.02 2.36 16 42 H 0.05 2.95 6.06 -2.39 -0.01 2.93 16 43 H -0.01 -0.71 7.49 -2.39 -0.02 -0.73 16 44 H 0.25 14.60 8.31 -92.71 -0.77 13.83 16 45 H 0.03 1.33 5.72 -2.39 -0.01 1.32 16 46 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 47 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 48 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 49 H 0.09 2.15 8.14 -2.38 -0.02 2.13 16 50 H 0.13 2.32 8.06 -2.91 -0.02 2.30 16 51 H 0.14 2.14 8.06 -2.91 -0.02 2.12 16 Total: -1.00 -74.29 403.84 3.55 -70.75 By element: Atomic # 1 Polarization: 22.70 SS G_CDS: 0.10 Total: 22.80 kcal Atomic # 6 Polarization: -15.74 SS G_CDS: 5.29 Total: -10.45 kcal Atomic # 7 Polarization: -103.98 SS G_CDS: -3.83 Total: -107.81 kcal Atomic # 8 Polarization: -22.44 SS G_CDS: -0.05 Total: -22.49 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 2.03 Total: 47.20 kcal Total: -74.29 3.55 -70.75 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947753213.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.292 kcal (2) G-P(sol) polarization free energy of solvation -74.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds