Wall clock time and date at job start Tue Mar 31 2020 16:39:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50694 * 109.47349 * 2 1 4 4 C 1.38248 * 119.99842 * 90.00117 * 3 2 1 5 5 C 1.38234 * 119.99744 * 180.02562 * 4 3 2 6 6 C 1.38232 * 120.00088 * 359.95150 * 5 4 3 7 7 C 1.50701 * 120.00000 * 179.97438 * 6 5 4 8 8 C 1.50699 * 109.46869 * 90.00370 * 7 6 5 9 9 O 1.21288 * 120.00124 * 0.02562 * 8 7 6 10 10 N 1.34775 * 120.00509 * 180.02562 * 8 7 6 11 11 C 1.46493 * 120.00445 * 179.97438 * 10 8 7 12 12 H 1.09001 * 109.46252 * 324.97481 * 11 10 8 13 13 C 1.53047 * 109.44883 * 84.94128 * 11 10 8 14 14 C 1.53194 * 109.31218 * 181.37931 * 13 11 10 15 15 N 1.46923 * 108.77509 * 305.35879 * 14 13 11 16 16 C 1.36928 * 120.63416 * 233.63219 * 15 14 13 17 17 H 1.08000 * 120.00379 * 150.15949 * 16 15 14 18 18 C 1.38816 * 119.99800 * 330.15564 * 16 15 14 19 19 N 1.31613 * 120.00133 * 344.49998 * 18 16 15 20 20 Si 1.86807 * 119.99848 * 164.49438 * 18 16 15 21 21 H 1.48500 * 109.46681 * 90.00382 * 20 18 16 22 22 H 1.48497 * 109.46883 * 210.00169 * 20 18 16 23 23 H 1.48497 * 109.47140 * 330.00116 * 20 18 16 24 24 C 1.46925 * 118.73806 * 53.61279 * 15 14 13 25 25 H 1.09007 * 109.58875 * 66.17201 * 24 15 14 26 26 C 1.52994 * 109.58996 * 186.45665 * 24 15 14 27 27 C 1.53044 * 109.46009 * 204.99612 * 11 10 8 28 28 C 1.38241 * 120.00222 * 0.28234 * 6 5 4 29 29 C 1.38231 * 120.00154 * 270.02198 * 3 2 1 30 30 H 1.09006 * 109.46884 * 299.99945 * 1 2 3 31 31 H 1.09000 * 109.47092 * 59.99768 * 1 2 3 32 32 H 1.08998 * 109.47007 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.47111 * 239.99640 * 2 1 3 34 34 H 1.09000 * 109.47092 * 120.00232 * 2 1 3 35 35 H 1.07997 * 119.99869 * 0.02562 * 4 3 2 36 36 H 1.08000 * 119.99421 * 179.97438 * 5 4 3 37 37 H 1.09006 * 109.47130 * 330.00776 * 7 6 5 38 38 H 1.09000 * 109.47738 * 210.00079 * 7 6 5 39 39 H 0.97006 * 119.99677 * 359.97438 * 10 8 7 40 40 H 1.09000 * 109.49577 * 61.42337 * 13 11 10 41 41 H 1.08999 * 109.49211 * 301.32843 * 13 11 10 42 42 H 1.08999 * 109.58253 * 185.57691 * 14 13 11 43 43 H 1.08997 * 109.58604 * 65.15330 * 14 13 11 44 44 H 0.97002 * 120.00257 * 179.97438 * 19 18 16 45 45 H 1.09005 * 109.47130 * 60.00096 * 26 24 15 46 46 H 1.08999 * 109.47747 * 179.97438 * 26 24 15 47 47 H 1.08998 * 109.47347 * 300.00368 * 26 24 15 48 48 H 1.09001 * 109.49465 * 58.68053 * 27 11 10 49 49 H 1.09001 * 109.52882 * 298.59624 * 27 11 10 50 50 H 1.07993 * 119.99792 * 179.72757 * 28 6 5 51 51 H 1.08000 * 119.99967 * 0.02562 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.2629 2.0724 1.1973 5 6 2.7232 3.3758 1.1973 6 6 2.9540 4.0273 0.0001 7 6 3.4553 5.4485 0.0001 8 6 4.9623 5.4495 0.0012 9 8 5.5695 4.3996 0.0014 10 7 5.6355 6.6171 0.0019 11 6 7.1004 6.6181 0.0035 12 1 7.4635 5.7768 0.5938 13 6 7.6117 6.4912 -1.4334 14 6 9.1432 6.4579 -1.4252 15 7 9.6382 7.6427 -0.7112 16 6 10.5458 8.4828 -1.2988 17 1 10.5545 9.5322 -1.0435 18 6 11.4550 7.9857 -2.2225 19 7 11.6582 6.6885 -2.3134 20 14 12.3898 9.1579 -3.3368 21 1 13.6580 9.5615 -2.6779 22 1 12.6939 8.4813 -4.6232 23 1 11.5608 10.3625 -3.5950 24 6 9.1403 7.9093 0.6452 25 1 9.4832 7.1257 1.3210 26 6 9.6615 9.2651 1.1257 27 6 7.6087 7.9263 0.6138 28 6 2.7190 3.3773 -1.1971 29 6 2.2624 2.0725 -1.1971 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8934 -0.5139 -0.8900 34 1 1.8934 -0.5139 0.8900 35 1 2.0832 1.5631 2.1325 36 1 2.9028 3.8850 2.1326 37 1 3.0910 5.9623 0.8898 38 1 3.0923 5.9619 -0.8902 39 1 5.1499 7.4569 0.0014 40 1 7.2694 7.3451 -2.0181 41 1 7.2301 5.5707 -1.8752 42 1 9.5144 6.4673 -2.4500 43 1 9.4864 5.5559 -0.9184 44 1 12.2932 6.3411 -2.9591 45 1 9.3134 10.0479 0.4517 46 1 9.2907 9.4612 2.1318 47 1 10.7514 9.2526 1.1358 48 1 7.2251 8.0273 1.6291 49 1 7.2666 8.7671 0.0103 50 1 2.8952 3.8879 -2.1323 51 1 2.0816 1.5637 -2.1324 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000947753216.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:39:03 Heat of formation + Delta-G solvation = -12.492986 kcal Electronic energy + Delta-G solvation = -27996.759905 eV Core-core repulsion = 24281.479491 eV Total energy + Delta-G solvation = -3715.280414 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.11228 -39.13034 -37.59064 -34.86246 -34.42237 -32.42311 -31.76479 -30.99375 -30.97747 -29.48288 -27.32997 -26.29949 -24.75017 -23.49206 -22.82566 -22.03352 -21.23788 -20.50631 -19.97509 -19.16547 -16.98642 -16.45277 -16.23472 -15.95584 -15.68344 -15.18573 -14.89563 -14.71377 -13.98252 -13.95059 -13.85167 -13.77288 -13.55953 -13.42019 -13.25622 -12.97669 -12.83704 -12.75105 -12.19127 -12.05364 -11.84753 -11.58463 -11.39957 -11.20397 -11.09325 -11.00396 -10.94998 -10.90817 -10.85803 -10.63427 -10.30801 -10.11882 -10.02952 -9.76850 -9.70770 -9.34002 -8.95605 -8.66037 -8.57654 -8.40106 -6.61413 -5.75540 -3.19716 1.23525 1.37016 2.85323 3.34440 3.38701 3.45318 3.46758 3.79859 4.50017 4.50342 4.62831 4.68009 4.86341 4.92384 5.03428 5.10408 5.17414 5.28694 5.30928 5.32185 5.40468 5.42307 5.45343 5.50475 5.61976 5.62895 5.71592 5.79915 5.87009 5.98826 6.00838 6.02343 6.17278 6.28351 6.32709 6.33490 6.43841 6.46191 6.52185 6.53307 6.53650 6.67119 6.81773 6.93017 6.94654 7.05405 7.11233 7.40291 7.69813 7.77460 7.84027 8.47445 8.49439 9.24155 9.87907 10.45588 11.33158 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.022771 B = 0.002199 C = 0.002087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1229.338485 B =12728.572162 C =13410.045219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.085 4.085 3 C -0.086 4.086 4 C -0.118 4.118 5 C -0.103 4.103 6 C -0.066 4.066 7 C -0.104 4.104 8 C 0.509 3.491 9 O -0.531 6.531 10 N -0.727 5.727 11 C 0.151 3.849 12 H 0.080 0.920 13 C -0.146 4.146 14 C 0.176 3.824 15 N -0.587 5.587 16 C -0.251 4.251 17 H 0.069 0.931 18 C 0.002 3.998 19 N -0.901 5.901 20 Si 0.900 3.100 21 H -0.287 1.287 22 H -0.290 1.290 23 H -0.280 1.280 24 C 0.171 3.829 25 H 0.026 0.974 26 C -0.135 4.135 27 C -0.133 4.133 28 C -0.102 4.102 29 C -0.117 4.117 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.056 0.944 33 H 0.071 0.929 34 H 0.070 0.930 35 H 0.119 0.881 36 H 0.119 0.881 37 H 0.099 0.901 38 H 0.100 0.900 39 H 0.394 0.606 40 H 0.054 0.946 41 H 0.051 0.949 42 H 0.087 0.913 43 H 0.020 0.980 44 H 0.253 0.747 45 H 0.053 0.947 46 H 0.038 0.962 47 H 0.063 0.937 48 H 0.054 0.946 49 H 0.063 0.937 50 H 0.120 0.880 51 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.806 -5.459 6.020 24.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.123 4.123 3 C -0.086 4.086 4 C -0.136 4.136 5 C -0.121 4.121 6 C -0.066 4.066 7 C -0.144 4.144 8 C 0.294 3.706 9 O -0.407 6.407 10 N -0.377 5.377 11 C 0.048 3.952 12 H 0.098 0.902 13 C -0.186 4.186 14 C 0.049 3.951 15 N -0.311 5.311 16 C -0.381 4.381 17 H 0.087 0.913 18 C -0.197 4.197 19 N -0.546 5.546 20 Si 0.730 3.270 21 H -0.214 1.214 22 H -0.216 1.216 23 H -0.205 1.205 24 C 0.063 3.937 25 H 0.044 0.956 26 C -0.192 4.192 27 C -0.173 4.173 28 C -0.120 4.120 29 C -0.135 4.135 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.137 0.863 36 H 0.137 0.863 37 H 0.117 0.883 38 H 0.118 0.882 39 H 0.227 0.773 40 H 0.072 0.928 41 H 0.070 0.930 42 H 0.106 0.894 43 H 0.038 0.962 44 H 0.063 0.937 45 H 0.072 0.928 46 H 0.057 0.943 47 H 0.082 0.918 48 H 0.072 0.928 49 H 0.081 0.919 50 H 0.138 0.862 51 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -22.220 -6.311 5.910 23.843 hybrid contribution 0.365 0.982 -0.677 1.247 sum -21.856 -5.328 5.233 23.096 Atomic orbital electron populations 1.21745 0.94843 1.01551 1.02148 1.20536 0.96026 0.92856 1.02849 1.19857 0.99406 0.96070 0.93270 1.20933 1.00448 0.94759 0.97416 1.20935 0.98879 0.94924 0.97326 1.19264 0.98941 0.94825 0.93568 1.20706 0.93239 0.95506 1.04945 1.20454 0.89327 0.84168 0.76601 1.90744 1.70074 1.31229 1.48607 1.46338 1.08262 1.07922 1.75223 1.21014 0.77228 0.98876 0.98090 0.90217 1.22560 1.00929 1.00338 0.94803 1.20725 0.86714 0.88432 0.99208 1.44150 1.48377 1.28155 1.10367 1.19132 1.08594 0.90150 1.20190 0.91330 1.25119 0.97189 0.95634 1.01710 1.70023 1.36619 1.11053 1.36873 0.86345 0.79894 0.80359 0.80442 1.21439 1.21646 1.20548 1.20361 0.89657 0.95375 0.88299 0.95637 1.21787 1.01971 0.97220 0.98269 1.22370 0.99550 0.96258 0.99136 1.20966 0.98681 0.94913 0.97410 1.20945 1.00337 0.94732 0.97456 0.92613 0.92597 0.92521 0.91080 0.91112 0.86317 0.86338 0.88262 0.88187 0.77282 0.92750 0.92983 0.89439 0.96205 0.93661 0.92811 0.94343 0.91839 0.92773 0.91850 0.86246 0.86270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 9.90 37.16 0.37 -0.60 16 2 C -0.09 -0.68 6.06 -27.88 -0.17 -0.85 16 3 C -0.09 -0.89 5.13 -104.62 -0.54 -1.43 16 4 C -0.12 -1.25 9.70 -39.58 -0.38 -1.63 16 5 C -0.10 -1.16 9.70 -39.58 -0.38 -1.55 16 6 C -0.07 -0.77 4.37 -104.62 -0.46 -1.23 16 7 C -0.10 -1.06 5.83 -29.03 -0.17 -1.23 16 8 C 0.51 7.39 7.79 -10.99 -0.09 7.31 16 9 O -0.53 -10.25 15.70 5.55 0.09 -10.16 16 10 N -0.73 -9.97 5.08 -53.76 -0.27 -10.24 16 11 C 0.15 2.64 2.42 -67.89 -0.16 2.48 16 12 H 0.08 1.60 7.58 -51.93 -0.39 1.20 16 13 C -0.15 -2.93 5.65 -26.61 -0.15 -3.08 16 14 C 0.18 4.29 5.28 -3.71 -0.02 4.27 16 15 N -0.59 -14.42 2.99 -164.78 -0.49 -14.91 16 16 C -0.25 -6.69 8.57 -15.06 -0.13 -6.82 16 17 H 0.07 1.77 6.24 -52.49 -0.33 1.45 16 18 C 0.00 0.06 4.94 -17.43 -0.09 -0.03 16 19 N -0.90 -26.32 11.23 55.49 0.62 -25.70 16 20 Si 0.90 21.59 29.58 -169.99 -5.03 16.56 16 21 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 22 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 23 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 24 C 0.17 3.48 3.49 -67.60 -0.24 3.25 16 25 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 26 C -0.13 -2.48 7.96 37.15 0.30 -2.18 16 27 C -0.13 -2.22 4.85 -26.61 -0.13 -2.35 16 28 C -0.10 -1.19 9.70 -39.58 -0.38 -1.57 16 29 C -0.12 -1.27 9.70 -39.58 -0.38 -1.65 16 30 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.07 0.53 8.09 -51.93 -0.42 0.11 16 34 H 0.07 0.52 8.09 -51.93 -0.42 0.10 16 35 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 36 H 0.12 1.17 8.06 -52.49 -0.42 0.74 16 37 H 0.10 0.76 8.09 -51.93 -0.42 0.34 16 38 H 0.10 0.81 8.08 -51.93 -0.42 0.39 16 39 H 0.39 4.11 8.60 -40.82 -0.35 3.76 16 40 H 0.05 1.08 8.14 -51.93 -0.42 0.65 16 41 H 0.05 1.07 8.14 -51.93 -0.42 0.64 16 42 H 0.09 2.38 6.15 -51.93 -0.32 2.06 16 43 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 45 H 0.05 0.98 7.43 -51.93 -0.39 0.60 16 46 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 47 H 0.06 1.27 7.63 -51.93 -0.40 0.87 16 48 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 49 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 50 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 51 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 LS Contribution 404.87 15.07 6.10 6.10 Total: -1.00 -32.47 404.87 -11.09 -43.56 By element: Atomic # 1 Polarization: 12.60 SS G_CDS: -8.91 Total: 3.69 kcal Atomic # 6 Polarization: -5.69 SS G_CDS: -3.21 Total: -8.90 kcal Atomic # 7 Polarization: -50.71 SS G_CDS: -0.14 Total: -50.85 kcal Atomic # 8 Polarization: -10.25 SS G_CDS: 0.09 Total: -10.16 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.03 Total: 16.56 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -32.47 -11.09 -43.56 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947753216.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.066 kcal (2) G-P(sol) polarization free energy of solvation -32.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.559 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds