Wall clock time and date at job start Tue Mar 31 2020 16:39:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50694 * 109.47349 * 2 1 4 4 C 1.38248 * 119.99842 * 90.00117 * 3 2 1 5 5 C 1.38234 * 119.99744 * 180.02562 * 4 3 2 6 6 C 1.38232 * 120.00088 * 359.95150 * 5 4 3 7 7 C 1.50701 * 120.00000 * 179.97438 * 6 5 4 8 8 C 1.50699 * 109.46869 * 90.00370 * 7 6 5 9 9 O 1.21288 * 120.00124 * 0.02562 * 8 7 6 10 10 N 1.34775 * 120.00509 * 180.02562 * 8 7 6 11 11 C 1.46493 * 120.00445 * 179.97438 * 10 8 7 12 12 H 1.09001 * 109.46252 * 324.97481 * 11 10 8 13 13 C 1.53047 * 109.44883 * 84.94128 * 11 10 8 14 14 C 1.53194 * 109.31218 * 181.37931 * 13 11 10 15 15 N 1.46923 * 108.77509 * 305.35879 * 14 13 11 16 16 C 1.36928 * 120.63416 * 233.63219 * 15 14 13 17 17 H 1.08000 * 120.00379 * 150.15949 * 16 15 14 18 18 C 1.38816 * 119.99800 * 330.15564 * 16 15 14 19 19 N 1.31613 * 120.00133 * 344.49998 * 18 16 15 20 20 Si 1.86807 * 119.99848 * 164.49438 * 18 16 15 21 21 H 1.48500 * 109.46681 * 90.00382 * 20 18 16 22 22 H 1.48497 * 109.46883 * 210.00169 * 20 18 16 23 23 H 1.48497 * 109.47140 * 330.00116 * 20 18 16 24 24 C 1.46925 * 118.73806 * 53.61279 * 15 14 13 25 25 H 1.09007 * 109.58875 * 66.17201 * 24 15 14 26 26 C 1.52994 * 109.58996 * 186.45665 * 24 15 14 27 27 C 1.53044 * 109.46009 * 204.99612 * 11 10 8 28 28 C 1.38241 * 120.00222 * 0.28234 * 6 5 4 29 29 C 1.38231 * 120.00154 * 270.02198 * 3 2 1 30 30 H 1.09006 * 109.46884 * 299.99945 * 1 2 3 31 31 H 1.09000 * 109.47092 * 59.99768 * 1 2 3 32 32 H 1.08998 * 109.47007 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.47111 * 239.99640 * 2 1 3 34 34 H 1.09000 * 109.47092 * 120.00232 * 2 1 3 35 35 H 1.07997 * 119.99869 * 0.02562 * 4 3 2 36 36 H 1.08000 * 119.99421 * 179.97438 * 5 4 3 37 37 H 1.09006 * 109.47130 * 330.00776 * 7 6 5 38 38 H 1.09000 * 109.47738 * 210.00079 * 7 6 5 39 39 H 0.97006 * 119.99677 * 359.97438 * 10 8 7 40 40 H 1.09000 * 109.49577 * 61.42337 * 13 11 10 41 41 H 1.08999 * 109.49211 * 301.32843 * 13 11 10 42 42 H 1.08999 * 109.58253 * 185.57691 * 14 13 11 43 43 H 1.08997 * 109.58604 * 65.15330 * 14 13 11 44 44 H 0.97002 * 120.00257 * 179.97438 * 19 18 16 45 45 H 1.09005 * 109.47130 * 60.00096 * 26 24 15 46 46 H 1.08999 * 109.47747 * 179.97438 * 26 24 15 47 47 H 1.08998 * 109.47347 * 300.00368 * 26 24 15 48 48 H 1.09001 * 109.49465 * 58.68053 * 27 11 10 49 49 H 1.09001 * 109.52882 * 298.59624 * 27 11 10 50 50 H 1.07993 * 119.99792 * 179.72757 * 28 6 5 51 51 H 1.08000 * 119.99967 * 0.02562 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.2629 2.0724 1.1973 5 6 2.7232 3.3758 1.1973 6 6 2.9540 4.0273 0.0001 7 6 3.4553 5.4485 0.0001 8 6 4.9623 5.4495 0.0012 9 8 5.5695 4.3996 0.0014 10 7 5.6355 6.6171 0.0019 11 6 7.1004 6.6181 0.0035 12 1 7.4635 5.7768 0.5938 13 6 7.6117 6.4912 -1.4334 14 6 9.1432 6.4579 -1.4252 15 7 9.6382 7.6427 -0.7112 16 6 10.5458 8.4828 -1.2988 17 1 10.5545 9.5322 -1.0435 18 6 11.4550 7.9857 -2.2225 19 7 11.6582 6.6885 -2.3134 20 14 12.3898 9.1579 -3.3368 21 1 13.6580 9.5615 -2.6779 22 1 12.6939 8.4813 -4.6232 23 1 11.5608 10.3625 -3.5950 24 6 9.1403 7.9093 0.6452 25 1 9.4832 7.1257 1.3210 26 6 9.6615 9.2651 1.1257 27 6 7.6087 7.9263 0.6138 28 6 2.7190 3.3773 -1.1971 29 6 2.2624 2.0725 -1.1971 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8934 -0.5139 -0.8900 34 1 1.8934 -0.5139 0.8900 35 1 2.0832 1.5631 2.1325 36 1 2.9028 3.8850 2.1326 37 1 3.0910 5.9623 0.8898 38 1 3.0923 5.9619 -0.8902 39 1 5.1499 7.4569 0.0014 40 1 7.2694 7.3451 -2.0181 41 1 7.2301 5.5707 -1.8752 42 1 9.5144 6.4673 -2.4500 43 1 9.4864 5.5559 -0.9184 44 1 12.2932 6.3411 -2.9591 45 1 9.3134 10.0479 0.4517 46 1 9.2907 9.4612 2.1318 47 1 10.7514 9.2526 1.1358 48 1 7.2251 8.0273 1.6291 49 1 7.2666 8.7671 0.0103 50 1 2.8952 3.8879 -2.1323 51 1 2.0816 1.5637 -2.1324 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000947753216.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:39:02 Heat of formation + Delta-G solvation = -30.581242 kcal Electronic energy + Delta-G solvation = -27997.544271 eV Core-core repulsion = 24281.479491 eV Total energy + Delta-G solvation = -3716.064779 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.19267 -40.16867 -39.12694 -36.10777 -35.46098 -34.21550 -33.10374 -32.18986 -31.78954 -31.08960 -28.37550 -27.73282 -26.56118 -24.36792 -23.65744 -23.62633 -22.55667 -21.54284 -21.29140 -20.73889 -18.42749 -17.86584 -17.47079 -17.04323 -16.78197 -16.56150 -15.93398 -15.85003 -15.69564 -15.49347 -15.03362 -14.69845 -14.64822 -14.61018 -14.47985 -14.34655 -14.13455 -13.71839 -13.33538 -13.01533 -12.94359 -12.87764 -12.70219 -12.68482 -12.59343 -12.52572 -12.33973 -12.10078 -12.04709 -11.84381 -11.71885 -11.69646 -11.64590 -11.48934 -11.30753 -10.79763 -10.55178 -9.95880 -9.77531 -9.39291 -8.63995 -7.83759 -5.30673 0.41638 0.54838 1.46932 1.48484 1.57690 1.73106 2.26191 2.52715 2.92119 3.32683 3.59273 3.71405 3.87154 3.90316 3.95901 4.07704 4.13755 4.16838 4.22604 4.28556 4.40241 4.49646 4.51323 4.59844 4.62053 4.63216 4.72562 4.74887 4.76149 4.79134 4.85633 4.96404 5.05925 5.08571 5.08881 5.11784 5.16379 5.21005 5.24541 5.38519 5.39167 5.49395 5.53587 5.55571 5.62073 5.70130 5.70672 5.73046 5.75148 6.15951 6.43282 6.68751 7.16976 7.39074 7.88916 8.42498 9.23736 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.022771 B = 0.002199 C = 0.002087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1229.338485 B =12728.572162 C =13410.045219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.085 4.085 3 C -0.093 4.093 4 C -0.129 4.129 5 C -0.116 4.116 6 C -0.085 4.085 7 C -0.092 4.092 8 C 0.507 3.493 9 O -0.585 6.585 10 N -0.711 5.711 11 C 0.163 3.837 12 H 0.050 0.950 13 C -0.129 4.129 14 C 0.184 3.816 15 N -0.602 5.602 16 C -0.247 4.247 17 H 0.081 0.919 18 C -0.060 4.060 19 N -0.942 5.942 20 Si 0.965 3.035 21 H -0.286 1.286 22 H -0.299 1.299 23 H -0.265 1.265 24 C 0.157 3.843 25 H 0.007 0.993 26 C -0.126 4.126 27 C -0.116 4.116 28 C -0.119 4.119 29 C -0.131 4.131 30 H 0.054 0.946 31 H 0.052 0.948 32 H 0.069 0.931 33 H 0.073 0.927 34 H 0.076 0.924 35 H 0.135 0.865 36 H 0.131 0.869 37 H 0.133 0.867 38 H 0.127 0.873 39 H 0.416 0.584 40 H 0.063 0.937 41 H 0.041 0.959 42 H 0.053 0.947 43 H -0.017 1.017 44 H 0.246 0.754 45 H 0.056 0.944 46 H 0.077 0.923 47 H 0.038 0.962 48 H 0.089 0.911 49 H 0.077 0.923 50 H 0.125 0.875 51 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.430 -3.442 7.101 26.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.123 4.123 3 C -0.093 4.093 4 C -0.147 4.147 5 C -0.134 4.134 6 C -0.085 4.085 7 C -0.131 4.131 8 C 0.295 3.705 9 O -0.464 6.464 10 N -0.363 5.363 11 C 0.058 3.942 12 H 0.068 0.932 13 C -0.169 4.169 14 C 0.057 3.943 15 N -0.326 5.326 16 C -0.377 4.377 17 H 0.098 0.902 18 C -0.254 4.254 19 N -0.589 5.589 20 Si 0.793 3.207 21 H -0.213 1.213 22 H -0.226 1.226 23 H -0.190 1.190 24 C 0.051 3.949 25 H 0.025 0.975 26 C -0.183 4.183 27 C -0.156 4.156 28 C -0.138 4.138 29 C -0.149 4.149 30 H 0.074 0.926 31 H 0.072 0.928 32 H 0.088 0.912 33 H 0.092 0.908 34 H 0.094 0.906 35 H 0.153 0.847 36 H 0.149 0.851 37 H 0.150 0.850 38 H 0.145 0.855 39 H 0.253 0.747 40 H 0.082 0.918 41 H 0.059 0.941 42 H 0.071 0.929 43 H 0.001 0.999 44 H 0.055 0.945 45 H 0.075 0.925 46 H 0.096 0.904 47 H 0.057 0.943 48 H 0.108 0.892 49 H 0.096 0.904 50 H 0.143 0.857 51 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -24.901 -4.231 7.019 26.215 hybrid contribution 1.168 0.278 -0.945 1.527 sum -23.733 -3.953 6.074 24.815 Atomic orbital electron populations 1.21712 0.93739 1.02407 1.02005 1.20587 0.96927 0.91473 1.03274 1.20186 0.98867 0.97166 0.93108 1.21236 1.00302 0.94894 0.98295 1.21221 0.98907 0.95420 0.97854 1.19521 0.99421 0.95869 0.93703 1.20724 0.89267 0.95325 1.07790 1.21259 0.91128 0.83204 0.74877 1.90734 1.71534 1.33204 1.50938 1.46039 1.06454 1.09115 1.74721 1.20588 0.79647 0.98531 0.95471 0.93201 1.22292 0.97416 1.00090 0.97134 1.20419 0.89663 0.87423 0.96770 1.44412 1.48376 1.27548 1.12262 1.19535 1.07907 0.90934 1.19361 0.90168 1.25924 0.98825 0.96951 1.03705 1.70208 1.37837 1.13005 1.37816 0.85312 0.78682 0.78669 0.78020 1.21281 1.22588 1.19004 1.20666 0.92423 0.96103 0.85712 0.97491 1.21703 1.00408 0.95674 1.00557 1.22166 0.96190 0.95783 1.01431 1.21216 0.99125 0.95505 0.97908 1.21216 1.00463 0.94859 0.98367 0.92647 0.92841 0.91164 0.90798 0.90558 0.84705 0.85109 0.84950 0.85549 0.74667 0.91839 0.94074 0.92884 0.99883 0.94477 0.92477 0.90404 0.94265 0.89208 0.90406 0.85689 0.85061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.68 9.90 71.98 0.71 -0.97 16 2 C -0.09 -1.27 6.06 29.85 0.18 -1.09 16 3 C -0.09 -1.87 5.13 -19.87 -0.10 -1.97 16 4 C -0.13 -2.63 9.70 22.27 0.22 -2.41 16 5 C -0.12 -2.49 9.70 22.27 0.22 -2.27 16 6 C -0.08 -1.88 4.37 -19.86 -0.09 -1.97 16 7 C -0.09 -1.60 5.83 29.10 0.17 -1.43 16 8 C 0.51 13.86 7.79 87.66 0.68 14.54 16 9 O -0.58 -22.69 15.70 -3.06 -0.05 -22.74 16 10 N -0.71 -17.63 5.08 -442.40 -2.25 -19.88 16 11 C 0.16 5.51 2.42 45.02 0.11 5.62 16 12 H 0.05 2.02 7.58 -2.39 -0.02 2.01 16 13 C -0.13 -5.23 5.65 30.68 0.17 -5.06 16 14 C 0.18 9.41 5.28 86.36 0.46 9.87 16 15 N -0.60 -29.97 2.99 -675.23 -2.02 -31.99 16 16 C -0.25 -13.23 8.57 84.04 0.72 -12.51 16 17 H 0.08 4.05 6.24 -2.91 -0.02 4.04 16 18 C -0.06 -3.35 4.94 84.86 0.42 -2.94 16 19 N -0.94 -57.53 11.23 21.65 0.24 -57.29 16 20 Si 0.96 45.11 29.58 68.60 2.03 47.14 16 21 H -0.29 -13.18 7.11 99.48 0.71 -12.47 16 22 H -0.30 -14.28 7.11 99.48 0.71 -13.57 16 23 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 24 C 0.16 6.26 3.49 44.98 0.16 6.42 16 25 H 0.01 0.32 8.14 -2.38 -0.02 0.30 16 26 C -0.13 -4.32 7.96 71.98 0.57 -3.75 16 27 C -0.12 -3.53 4.85 30.68 0.15 -3.38 16 28 C -0.12 -2.71 9.70 22.27 0.22 -2.50 16 29 C -0.13 -2.80 9.70 22.27 0.22 -2.58 16 30 H 0.05 0.66 8.14 -2.38 -0.02 0.64 16 31 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.07 0.64 8.14 -2.39 -0.02 0.63 16 33 H 0.07 1.04 8.09 -2.39 -0.02 1.02 16 34 H 0.08 1.04 8.09 -2.39 -0.02 1.02 16 35 H 0.14 2.16 8.06 -2.91 -0.02 2.13 16 36 H 0.13 2.34 8.06 -2.91 -0.02 2.32 16 37 H 0.13 1.45 8.09 -2.38 -0.02 1.43 16 38 H 0.13 1.57 8.08 -2.39 -0.02 1.55 16 39 H 0.42 6.86 8.60 -92.70 -0.80 6.06 16 40 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 41 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 42 H 0.05 3.06 6.15 -2.39 -0.01 3.04 16 43 H -0.02 -0.97 8.14 -2.39 -0.02 -0.99 16 44 H 0.25 14.67 8.31 -92.71 -0.77 13.90 16 45 H 0.06 1.92 7.43 -2.38 -0.02 1.90 16 46 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 47 H 0.04 1.51 7.63 -2.39 -0.02 1.49 16 48 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 49 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 50 H 0.13 2.54 8.06 -2.91 -0.02 2.52 16 51 H 0.13 2.32 8.06 -2.91 -0.02 2.29 16 Total: -1.00 -74.91 404.87 3.24 -71.67 By element: Atomic # 1 Polarization: 21.37 SS G_CDS: 0.10 Total: 21.47 kcal Atomic # 6 Polarization: -13.56 SS G_CDS: 5.18 Total: -8.38 kcal Atomic # 7 Polarization: -105.13 SS G_CDS: -4.02 Total: -109.15 kcal Atomic # 8 Polarization: -22.69 SS G_CDS: -0.05 Total: -22.74 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 2.03 Total: 47.14 kcal Total: -74.91 3.24 -71.67 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947753216.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.085 kcal (2) G-P(sol) polarization free energy of solvation -74.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds