Wall clock time and date at job start Tue Mar 31 2020 16:22:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50702 * 109.47124 * 2 1 4 4 C 1.38385 * 119.85282 * 264.99798 * 3 2 1 5 5 C 1.37934 * 120.14165 * 179.72383 * 4 3 2 6 6 C 1.39595 * 119.85437 * 0.25550 * 5 4 3 7 7 C 1.47851 * 120.14568 * 179.97438 * 6 5 4 8 8 O 1.21547 * 120.00126 * 150.33950 * 7 6 5 9 9 N 1.34775 * 119.99739 * 330.35028 * 7 6 5 10 10 C 1.46498 * 120.00314 * 6.62410 * 9 7 6 11 11 C 1.53002 * 109.47275 * 99.15105 * 10 9 7 12 12 C 1.46502 * 119.99703 * 186.62811 * 9 7 6 13 13 C 1.53943 * 113.74497 * 42.92389 * 12 9 7 14 14 N 1.47811 * 86.04000 * 222.08427 * 13 12 9 15 15 C 1.36934 * 134.45690 * 204.63967 * 14 13 12 16 16 H 1.08002 * 119.99933 * 184.82594 * 15 14 13 17 17 C 1.38811 * 120.00020 * 4.83413 * 15 14 13 18 18 N 1.31617 * 119.99971 * 5.04937 * 17 15 14 19 19 Si 1.86797 * 119.99785 * 185.05202 * 17 15 14 20 20 H 1.48497 * 109.47274 * 94.99741 * 19 17 15 21 21 H 1.48501 * 109.46942 * 214.99500 * 19 17 15 22 22 H 1.48503 * 109.47506 * 334.99879 * 19 17 15 23 23 C 1.47588 * 91.04889 * 24.54891 * 14 13 12 24 24 C 1.39553 * 119.71304 * 0.02562 * 6 5 4 25 25 C 1.37982 * 119.85054 * 359.97438 * 24 6 5 26 26 C 1.50702 * 119.92683 * 179.97438 * 25 24 6 27 27 C 1.52996 * 109.47462 * 265.00105 * 26 25 24 28 28 H 1.09002 * 109.47221 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47233 * 300.00542 * 1 2 3 30 30 H 1.09006 * 109.46946 * 60.00102 * 1 2 3 31 31 H 1.09002 * 109.47233 * 240.00235 * 2 1 3 32 32 H 1.08994 * 109.46922 * 120.00341 * 2 1 3 33 33 H 1.07993 * 119.92512 * 0.02562 * 4 3 2 34 34 H 1.08003 * 120.07088 * 180.27741 * 5 4 3 35 35 H 1.08997 * 109.46997 * 219.15192 * 10 9 7 36 36 H 1.09001 * 109.46874 * 339.14917 * 10 9 7 37 37 H 1.09001 * 109.46943 * 300.00440 * 11 10 9 38 38 H 1.09004 * 109.47080 * 59.99635 * 11 10 9 39 39 H 1.08991 * 109.47638 * 180.02562 * 11 10 9 40 40 H 1.09001 * 112.94633 * 174.51664 * 12 9 7 41 41 H 1.09005 * 113.76712 * 336.35222 * 13 12 9 42 42 H 1.08997 * 113.77111 * 107.74522 * 13 12 9 43 43 H 0.96997 * 120.00075 * 179.97438 * 18 17 15 44 44 H 1.08998 * 113.76797 * 221.15163 * 23 14 13 45 45 H 1.08997 * 113.76697 * 89.75389 * 23 14 13 46 46 H 1.08002 * 120.07434 * 179.97438 * 24 6 5 47 47 H 1.09009 * 109.47138 * 25.00372 * 26 25 24 48 48 H 1.09003 * 109.47228 * 145.00126 * 26 25 24 49 49 H 1.09003 * 109.46882 * 59.99809 * 27 26 25 50 50 H 1.08995 * 109.47598 * 179.97438 * 27 26 25 51 51 H 1.08999 * 109.47204 * 300.00222 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3606 2.0354 -1.1957 5 6 2.8156 3.3375 -1.2031 6 6 2.9496 4.0337 -0.0005 7 6 3.4372 5.4295 -0.0010 8 8 3.0740 6.2004 0.8657 9 7 4.2842 5.8470 -0.9626 10 6 4.6081 4.9654 -2.0869 11 6 3.7609 5.3540 -3.3002 12 6 4.8810 7.1826 -0.8834 13 6 5.3668 7.5619 0.5273 14 7 4.7822 8.8928 0.2593 15 6 5.0148 10.1558 0.7346 16 1 4.3818 10.9743 0.4250 17 6 6.0642 10.3841 1.6140 18 7 6.8956 9.4088 1.9138 19 14 6.2962 12.0755 2.3722 20 1 5.6390 12.1157 3.7032 21 1 7.7466 12.3534 2.5277 22 1 5.6874 13.1019 1.4884 23 6 3.8492 8.3144 -0.7272 24 6 2.6224 3.4061 1.2022 25 6 2.1684 2.1031 1.1957 26 6 1.8151 1.4235 2.4935 27 6 3.0167 0.6175 2.9908 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 2.2557 1.4959 -2.1253 34 1 3.0672 3.8175 -2.1373 35 1 5.6648 5.0657 -2.3344 36 1 4.3958 3.9324 -1.8113 37 1 2.7041 5.2539 -3.0526 38 1 3.9731 6.3871 -3.5757 39 1 4.0015 4.6979 -4.1366 40 1 5.6181 7.3657 -1.6653 41 1 4.8661 7.0148 1.3262 42 1 6.4518 7.5702 0.6309 43 1 7.6291 9.5684 2.5280 44 1 3.7248 8.9223 -1.6232 45 1 2.9018 7.9889 -0.2975 46 1 2.7242 3.9391 2.1360 47 1 1.5491 2.1753 3.2367 48 1 0.9694 0.7544 2.3348 49 1 3.8624 1.2867 3.1495 50 1 2.7613 0.1264 3.9298 51 1 3.2827 -0.1342 2.2477 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000957479316.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:22:18 Heat of formation + Delta-G solvation = 69.220921 kcal Electronic energy + Delta-G solvation = -29085.813145 eV Core-core repulsion = 25374.076112 eV Total energy + Delta-G solvation = -3711.737033 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.74006 -39.27881 -36.83848 -35.96489 -34.35135 -33.60272 -32.02170 -30.48197 -29.85005 -29.33260 -27.26772 -24.97099 -24.60117 -24.24817 -23.25335 -22.91171 -21.70950 -21.07606 -20.12939 -18.39857 -16.84961 -16.55476 -16.46245 -16.14343 -15.32041 -15.16626 -14.65694 -14.57080 -14.40022 -13.99453 -13.90864 -13.75746 -13.53806 -13.46469 -13.08840 -12.85411 -12.69300 -12.45255 -12.38537 -12.20702 -11.89705 -11.74453 -11.60870 -11.50682 -11.38002 -11.32520 -11.19731 -11.00088 -10.87727 -10.78513 -10.66257 -10.45899 -10.02097 -9.87469 -9.43455 -9.23435 -8.87380 -8.62535 -8.52949 -8.02532 -6.68255 -5.63772 -2.95774 0.93193 1.29140 3.04239 3.29638 3.46774 3.51852 3.53225 3.80589 4.47726 4.56170 4.59216 4.63093 4.74174 4.81390 4.89784 5.04798 5.07748 5.16025 5.17045 5.21461 5.30213 5.36968 5.39549 5.40281 5.44669 5.57021 5.60169 5.62371 5.68669 5.73079 5.74634 5.77614 5.81178 5.87212 5.91677 5.95061 6.01453 6.11130 6.17326 6.28604 6.36240 6.45680 6.52005 6.69919 6.71828 6.86511 7.03253 7.42000 7.67896 7.68454 7.85781 8.11140 8.62993 9.16444 9.83075 10.75001 11.52175 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.017617 B = 0.002938 C = 0.002648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1589.030758 B = 9527.658218 C =10570.564691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.090 4.090 3 C -0.065 4.065 4 C -0.127 4.127 5 C -0.123 4.123 6 C -0.122 4.122 7 C 0.549 3.451 8 O -0.509 6.509 9 N -0.594 5.594 10 C 0.069 3.931 11 C -0.178 4.178 12 C 0.092 3.908 13 C 0.149 3.851 14 N -0.603 5.603 15 C -0.214 4.214 16 H 0.078 0.922 17 C -0.011 4.011 18 N -0.919 5.919 19 Si 0.911 3.089 20 H -0.290 1.290 21 H -0.291 1.291 22 H -0.281 1.281 23 C 0.112 3.888 24 C -0.059 4.059 25 C -0.088 4.088 26 C -0.088 4.088 27 C -0.148 4.148 28 H 0.057 0.943 29 H 0.058 0.942 30 H 0.056 0.944 31 H 0.071 0.929 32 H 0.076 0.924 33 H 0.124 0.876 34 H 0.159 0.841 35 H 0.075 0.925 36 H 0.106 0.894 37 H 0.061 0.939 38 H 0.067 0.933 39 H 0.066 0.934 40 H 0.103 0.897 41 H 0.048 0.952 42 H 0.075 0.925 43 H 0.251 0.749 44 H 0.035 0.965 45 H 0.052 0.948 46 H 0.132 0.868 47 H 0.073 0.927 48 H 0.075 0.925 49 H 0.058 0.942 50 H 0.057 0.943 51 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.355 -23.401 -8.365 26.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.127 4.127 3 C -0.065 4.065 4 C -0.145 4.145 5 C -0.141 4.141 6 C -0.125 4.125 7 C 0.337 3.663 8 O -0.385 6.385 9 N -0.327 5.327 10 C -0.054 4.054 11 C -0.236 4.236 12 C -0.011 4.011 13 C 0.023 3.977 14 N -0.329 5.329 15 C -0.342 4.342 16 H 0.096 0.904 17 C -0.207 4.207 18 N -0.567 5.567 19 Si 0.742 3.258 20 H -0.218 1.218 21 H -0.218 1.218 22 H -0.206 1.206 23 C -0.015 4.015 24 C -0.078 4.078 25 C -0.088 4.088 26 C -0.125 4.125 27 C -0.205 4.205 28 H 0.076 0.924 29 H 0.077 0.923 30 H 0.075 0.925 31 H 0.089 0.911 32 H 0.095 0.905 33 H 0.142 0.858 34 H 0.176 0.824 35 H 0.093 0.907 36 H 0.123 0.877 37 H 0.079 0.921 38 H 0.086 0.914 39 H 0.085 0.915 40 H 0.121 0.879 41 H 0.066 0.934 42 H 0.093 0.907 43 H 0.062 0.938 44 H 0.053 0.947 45 H 0.070 0.930 46 H 0.150 0.850 47 H 0.092 0.908 48 H 0.093 0.907 49 H 0.077 0.923 50 H 0.076 0.924 51 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -9.355 -22.695 -7.715 25.732 hybrid contribution 0.183 0.983 0.366 1.065 sum -9.172 -21.712 -7.349 24.689 Atomic orbital electron populations 1.21764 0.94680 1.01640 1.02437 1.20631 0.96260 0.92771 1.03005 1.19883 0.97948 0.96011 0.92687 1.20961 1.00806 0.95247 0.97452 1.22351 0.97735 0.94959 0.99049 1.20080 1.03387 0.94694 0.94358 1.18282 0.79325 0.86875 0.81833 1.90852 1.55841 1.54853 1.36979 1.47999 1.45399 1.16559 1.22770 1.22438 1.00081 0.96171 0.86733 1.22287 1.00527 1.03015 0.97746 1.24059 0.96617 0.78599 1.01845 1.22796 0.99413 0.84438 0.91035 1.45610 1.38832 1.02501 1.45995 1.18996 1.09974 0.83273 1.21916 0.90420 1.24766 0.97587 0.97730 1.00615 1.69830 1.17416 1.30866 1.38586 0.86101 0.76937 0.83395 0.79366 1.21752 1.21780 1.20630 1.22966 0.94717 0.91271 0.92540 1.21133 0.95321 0.93575 0.97788 1.19658 1.00439 0.93916 0.94831 1.20598 0.98672 0.99363 0.93860 1.21769 0.98060 1.00015 1.00693 0.92424 0.92332 0.92481 0.91082 0.90544 0.85800 0.82417 0.90689 0.87699 0.92054 0.91393 0.91516 0.87869 0.93390 0.90733 0.93844 0.94714 0.93038 0.85021 0.90840 0.90681 0.92270 0.92388 0.92555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 9.72 37.16 0.36 -0.61 16 2 C -0.09 -0.64 5.37 -27.88 -0.15 -0.79 16 3 C -0.07 -0.63 5.14 -104.53 -0.54 -1.17 16 4 C -0.13 -1.22 9.66 -39.64 -0.38 -1.60 16 5 C -0.12 -1.40 7.50 -39.19 -0.29 -1.69 16 6 C -0.12 -1.79 5.60 -104.97 -0.59 -2.37 16 7 C 0.55 10.06 6.88 -12.33 -0.08 9.97 16 8 O -0.51 -11.67 12.44 5.32 0.07 -11.60 16 9 N -0.59 -9.92 2.74 -169.00 -0.46 -10.39 16 10 C 0.07 0.81 5.58 -4.04 -0.02 0.78 16 11 C -0.18 -1.74 9.14 37.16 0.34 -1.40 16 12 C 0.09 1.87 4.58 -70.14 -0.32 1.55 16 13 C 0.15 3.86 6.99 -2.84 -0.02 3.84 16 14 N -0.60 -16.87 3.70 -177.86 -0.66 -17.53 16 15 C -0.21 -6.41 10.69 -15.06 -0.16 -6.57 16 16 H 0.08 2.25 7.83 -52.49 -0.41 1.84 16 17 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 18 N -0.92 -28.62 11.29 55.49 0.63 -27.99 16 19 Si 0.91 23.25 29.56 -169.99 -5.02 18.22 16 20 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 21 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 22 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 23 C 0.11 2.59 8.27 -2.96 -0.02 2.56 16 24 C -0.06 -0.83 9.23 -39.19 -0.36 -1.19 16 25 C -0.09 -0.98 5.13 -104.68 -0.54 -1.52 16 26 C -0.09 -0.79 5.37 -27.88 -0.15 -0.94 16 27 C -0.15 -1.21 9.72 37.16 0.36 -0.85 16 28 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.06 0.41 6.83 -51.93 -0.35 0.06 16 30 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.07 0.43 8.05 -51.93 -0.42 0.01 16 32 H 0.08 0.51 5.60 -51.93 -0.29 0.21 16 33 H 0.12 0.88 8.06 -52.49 -0.42 0.45 16 34 H 0.16 1.55 2.63 -52.48 -0.14 1.41 16 35 H 0.07 0.82 8.13 -51.93 -0.42 0.40 16 36 H 0.11 1.10 3.93 -52.63 -0.21 0.89 16 37 H 0.06 0.62 7.13 -51.93 -0.37 0.25 16 38 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.10 1.95 8.07 -51.93 -0.42 1.53 16 41 H 0.05 1.35 5.78 -51.93 -0.30 1.05 16 42 H 0.07 2.09 6.87 -51.93 -0.36 1.74 16 43 H 0.25 7.54 8.31 -40.82 -0.34 7.20 16 44 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 45 H 0.05 1.26 6.24 -51.93 -0.32 0.94 16 46 H 0.13 1.98 7.92 -52.49 -0.42 1.56 16 47 H 0.07 0.68 8.05 -51.92 -0.42 0.26 16 48 H 0.07 0.57 5.61 -51.93 -0.29 0.28 16 49 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 50 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 51 H 0.06 0.42 6.82 -51.93 -0.35 0.07 16 LS Contribution 389.97 15.07 5.88 5.88 Total: -1.00 -35.31 389.97 -10.25 -45.56 By element: Atomic # 1 Polarization: 8.27 SS G_CDS: -8.01 Total: 0.26 kcal Atomic # 6 Polarization: 0.26 SS G_CDS: -2.67 Total: -2.41 kcal Atomic # 7 Polarization: -55.41 SS G_CDS: -0.49 Total: -55.91 kcal Atomic # 8 Polarization: -11.67 SS G_CDS: 0.07 Total: -11.60 kcal Atomic # 14 Polarization: 23.25 SS G_CDS: -5.02 Total: 18.22 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -35.31 -10.25 -45.56 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000957479316.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.785 kcal (2) G-P(sol) polarization free energy of solvation -35.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.564 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds