Wall clock time and date at job start Tue Mar 31 2020 16:22:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50702 * 109.47124 * 2 1 4 4 C 1.38385 * 119.85282 * 264.99798 * 3 2 1 5 5 C 1.37934 * 120.14165 * 179.72383 * 4 3 2 6 6 C 1.39595 * 119.85437 * 0.25550 * 5 4 3 7 7 C 1.47851 * 120.14568 * 179.97438 * 6 5 4 8 8 O 1.21547 * 120.00126 * 150.33950 * 7 6 5 9 9 N 1.34775 * 119.99739 * 330.35028 * 7 6 5 10 10 C 1.46498 * 120.00314 * 6.62410 * 9 7 6 11 11 C 1.53002 * 109.47275 * 99.15105 * 10 9 7 12 12 C 1.46502 * 119.99703 * 186.62811 * 9 7 6 13 13 C 1.53943 * 113.74497 * 42.92389 * 12 9 7 14 14 N 1.47811 * 86.04000 * 222.08427 * 13 12 9 15 15 C 1.36934 * 134.45690 * 204.63967 * 14 13 12 16 16 H 1.08002 * 119.99933 * 184.82594 * 15 14 13 17 17 C 1.38811 * 120.00020 * 4.83413 * 15 14 13 18 18 N 1.31617 * 119.99971 * 5.04937 * 17 15 14 19 19 Si 1.86797 * 119.99785 * 185.05202 * 17 15 14 20 20 H 1.48497 * 109.47274 * 94.99741 * 19 17 15 21 21 H 1.48501 * 109.46942 * 214.99500 * 19 17 15 22 22 H 1.48503 * 109.47506 * 334.99879 * 19 17 15 23 23 C 1.47588 * 91.04889 * 24.54891 * 14 13 12 24 24 C 1.39553 * 119.71304 * 0.02562 * 6 5 4 25 25 C 1.37982 * 119.85054 * 359.97438 * 24 6 5 26 26 C 1.50702 * 119.92683 * 179.97438 * 25 24 6 27 27 C 1.52996 * 109.47462 * 265.00105 * 26 25 24 28 28 H 1.09002 * 109.47221 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47233 * 300.00542 * 1 2 3 30 30 H 1.09006 * 109.46946 * 60.00102 * 1 2 3 31 31 H 1.09002 * 109.47233 * 240.00235 * 2 1 3 32 32 H 1.08994 * 109.46922 * 120.00341 * 2 1 3 33 33 H 1.07993 * 119.92512 * 0.02562 * 4 3 2 34 34 H 1.08003 * 120.07088 * 180.27741 * 5 4 3 35 35 H 1.08997 * 109.46997 * 219.15192 * 10 9 7 36 36 H 1.09001 * 109.46874 * 339.14917 * 10 9 7 37 37 H 1.09001 * 109.46943 * 300.00440 * 11 10 9 38 38 H 1.09004 * 109.47080 * 59.99635 * 11 10 9 39 39 H 1.08991 * 109.47638 * 180.02562 * 11 10 9 40 40 H 1.09001 * 112.94633 * 174.51664 * 12 9 7 41 41 H 1.09005 * 113.76712 * 336.35222 * 13 12 9 42 42 H 1.08997 * 113.77111 * 107.74522 * 13 12 9 43 43 H 0.96997 * 120.00075 * 179.97438 * 18 17 15 44 44 H 1.08998 * 113.76797 * 221.15163 * 23 14 13 45 45 H 1.08997 * 113.76697 * 89.75389 * 23 14 13 46 46 H 1.08002 * 120.07434 * 179.97438 * 24 6 5 47 47 H 1.09009 * 109.47138 * 25.00372 * 26 25 24 48 48 H 1.09003 * 109.47228 * 145.00126 * 26 25 24 49 49 H 1.09003 * 109.46882 * 59.99809 * 27 26 25 50 50 H 1.08995 * 109.47598 * 179.97438 * 27 26 25 51 51 H 1.08999 * 109.47204 * 300.00222 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3606 2.0354 -1.1957 5 6 2.8156 3.3375 -1.2031 6 6 2.9496 4.0337 -0.0005 7 6 3.4372 5.4295 -0.0010 8 8 3.0740 6.2004 0.8657 9 7 4.2842 5.8470 -0.9626 10 6 4.6081 4.9654 -2.0869 11 6 3.7609 5.3540 -3.3002 12 6 4.8810 7.1826 -0.8834 13 6 5.3668 7.5619 0.5273 14 7 4.7822 8.8928 0.2593 15 6 5.0148 10.1558 0.7346 16 1 4.3818 10.9743 0.4250 17 6 6.0642 10.3841 1.6140 18 7 6.8956 9.4088 1.9138 19 14 6.2962 12.0755 2.3722 20 1 5.6390 12.1157 3.7032 21 1 7.7466 12.3534 2.5277 22 1 5.6874 13.1019 1.4884 23 6 3.8492 8.3144 -0.7272 24 6 2.6224 3.4061 1.2022 25 6 2.1684 2.1031 1.1957 26 6 1.8151 1.4235 2.4935 27 6 3.0167 0.6175 2.9908 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 2.2557 1.4959 -2.1253 34 1 3.0672 3.8175 -2.1373 35 1 5.6648 5.0657 -2.3344 36 1 4.3958 3.9324 -1.8113 37 1 2.7041 5.2539 -3.0526 38 1 3.9731 6.3871 -3.5757 39 1 4.0015 4.6979 -4.1366 40 1 5.6181 7.3657 -1.6653 41 1 4.8661 7.0148 1.3262 42 1 6.4518 7.5702 0.6309 43 1 7.6291 9.5684 2.5280 44 1 3.7248 8.9223 -1.6232 45 1 2.9018 7.9889 -0.2975 46 1 2.7242 3.9391 2.1360 47 1 1.5491 2.1753 3.2367 48 1 0.9694 0.7544 2.3348 49 1 3.8624 1.2867 3.1495 50 1 2.7613 0.1264 3.9298 51 1 3.2827 -0.1342 2.2477 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000957479316.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:22:17 Heat of formation + Delta-G solvation = 48.636622 kcal Electronic energy + Delta-G solvation = -29086.705747 eV Core-core repulsion = 25374.076112 eV Total energy + Delta-G solvation = -3712.629635 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.99290 -40.45649 -38.56559 -37.20725 -35.37577 -34.32023 -34.11924 -31.65940 -30.81918 -30.23535 -29.17560 -26.61130 -26.07308 -25.32270 -24.45113 -24.08447 -22.51089 -22.10595 -21.72040 -19.79501 -18.81137 -17.95207 -17.52241 -17.05753 -16.98006 -16.54355 -16.30019 -15.93559 -15.52501 -15.24683 -14.88603 -14.79452 -14.59444 -14.33960 -14.21464 -14.08512 -13.84233 -13.73911 -13.46287 -13.39893 -13.09180 -13.00994 -12.85567 -12.73809 -12.71421 -12.55450 -12.44999 -12.10873 -12.03130 -12.01834 -11.91500 -11.73900 -11.62032 -11.52267 -11.37119 -10.97640 -10.52438 -9.82580 -9.53797 -9.45108 -8.90784 -7.91996 -5.27806 -0.05751 0.39258 1.40225 1.44625 1.53266 1.78247 1.97210 2.46486 2.77806 3.24264 3.46070 3.50765 3.74585 3.81151 3.86723 3.93521 4.03202 4.13849 4.22967 4.26193 4.35959 4.46321 4.47294 4.53620 4.55201 4.57365 4.59495 4.63876 4.78065 4.79666 4.84669 4.93380 4.94557 4.99656 5.02551 5.05758 5.11607 5.13672 5.20293 5.24247 5.26360 5.34285 5.39148 5.40667 5.45774 5.49631 5.52052 5.69741 5.84005 5.89889 6.00448 6.49175 6.87333 7.22870 7.56409 8.54486 9.23719 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.017617 B = 0.002938 C = 0.002648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1589.030758 B = 9527.658218 C =10570.564691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.088 4.088 3 C -0.057 4.057 4 C -0.118 4.118 5 C -0.117 4.117 6 C -0.147 4.147 7 C 0.542 3.458 8 O -0.571 6.571 9 N -0.592 5.592 10 C 0.061 3.939 11 C -0.173 4.173 12 C 0.128 3.872 13 C 0.147 3.853 14 N -0.631 5.631 15 C -0.236 4.236 16 H 0.081 0.919 17 C -0.070 4.070 18 N -0.952 5.952 19 Si 0.985 3.015 20 H -0.292 1.292 21 H -0.287 1.287 22 H -0.263 1.263 23 C 0.114 3.886 24 C -0.084 4.084 25 C -0.091 4.091 26 C -0.088 4.088 27 C -0.145 4.145 28 H 0.074 0.926 29 H 0.048 0.952 30 H 0.055 0.945 31 H 0.092 0.908 32 H 0.084 0.916 33 H 0.164 0.836 34 H 0.178 0.822 35 H 0.089 0.911 36 H 0.124 0.876 37 H 0.058 0.942 38 H 0.056 0.944 39 H 0.105 0.895 40 H 0.128 0.872 41 H 0.017 0.983 42 H 0.046 0.954 43 H 0.249 0.751 44 H 0.056 0.944 45 H 0.035 0.965 46 H 0.101 0.899 47 H 0.060 0.940 48 H 0.096 0.904 49 H 0.038 0.962 50 H 0.072 0.928 51 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.123 -26.125 -11.267 30.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.125 4.125 3 C -0.057 4.057 4 C -0.136 4.136 5 C -0.134 4.134 6 C -0.150 4.150 7 C 0.333 3.667 8 O -0.452 6.452 9 N -0.323 5.323 10 C -0.060 4.060 11 C -0.230 4.230 12 C 0.024 3.976 13 C 0.020 3.980 14 N -0.358 5.358 15 C -0.365 4.365 16 H 0.099 0.901 17 C -0.263 4.263 18 N -0.600 5.600 19 Si 0.812 3.188 20 H -0.220 1.220 21 H -0.213 1.213 22 H -0.187 1.187 23 C -0.012 4.012 24 C -0.103 4.103 25 C -0.091 4.091 26 C -0.125 4.125 27 C -0.202 4.202 28 H 0.093 0.907 29 H 0.067 0.933 30 H 0.074 0.926 31 H 0.111 0.889 32 H 0.102 0.898 33 H 0.182 0.818 34 H 0.194 0.806 35 H 0.107 0.893 36 H 0.141 0.859 37 H 0.077 0.923 38 H 0.075 0.925 39 H 0.123 0.877 40 H 0.145 0.855 41 H 0.035 0.965 42 H 0.064 0.936 43 H 0.058 0.942 44 H 0.074 0.926 45 H 0.052 0.948 46 H 0.119 0.881 47 H 0.079 0.921 48 H 0.114 0.886 49 H 0.057 0.943 50 H 0.091 0.909 51 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -10.136 -25.462 -10.681 29.413 hybrid contribution 0.344 1.693 1.279 2.150 sum -9.792 -23.769 -9.401 27.372 Atomic orbital electron populations 1.21768 0.94143 1.02665 1.01940 1.20724 0.96539 0.90711 1.04516 1.20312 0.96126 0.97340 0.91968 1.21411 0.98813 0.94367 0.98962 1.22512 0.97209 0.95595 0.98087 1.19851 1.06072 0.92940 0.96134 1.18992 0.78697 0.88121 0.80922 1.90810 1.58267 1.56802 1.39296 1.47994 1.44447 1.15738 1.24119 1.22848 1.01542 0.95984 0.85595 1.22264 0.99811 1.03282 0.97690 1.23378 0.95483 0.80170 0.98579 1.22592 0.97188 0.84277 0.93897 1.46029 1.40192 1.02499 1.47063 1.19427 1.10128 0.84509 1.22401 0.90078 1.25726 0.97372 1.02005 1.01166 1.70044 1.17842 1.33083 1.39059 0.84972 0.76846 0.78855 0.78122 1.21951 1.21330 1.18742 1.22988 0.93943 0.92325 0.91922 1.21063 0.97445 0.95126 0.96694 1.19865 0.99792 0.92751 0.96685 1.20651 0.99761 0.99376 0.92695 1.21751 0.96873 0.99746 1.01847 0.90671 0.93278 0.92620 0.88902 0.89803 0.81831 0.80573 0.89297 0.85915 0.92344 0.92490 0.87651 0.85456 0.96508 0.93581 0.94248 0.92567 0.94765 0.88111 0.92111 0.88613 0.94260 0.90900 0.91277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.40 9.72 71.98 0.70 -0.70 16 2 C -0.09 -0.88 5.37 29.85 0.16 -0.72 16 3 C -0.06 -0.95 5.14 -19.81 -0.10 -1.05 16 4 C -0.12 -1.81 9.66 22.23 0.21 -1.60 16 5 C -0.12 -2.39 7.50 22.53 0.17 -2.22 16 6 C -0.15 -4.42 5.60 -20.09 -0.11 -4.54 16 7 C 0.54 21.03 6.88 86.79 0.60 21.63 16 8 O -0.57 -28.65 12.44 -3.86 -0.05 -28.70 16 9 N -0.59 -20.00 2.74 -806.89 -2.21 -22.21 16 10 C 0.06 1.29 5.58 86.38 0.48 1.77 16 11 C -0.17 -2.80 9.14 71.98 0.66 -2.14 16 12 C 0.13 5.35 4.58 46.75 0.21 5.56 16 13 C 0.15 8.10 6.99 86.44 0.60 8.71 16 14 N -0.63 -36.91 3.70 -716.63 -2.65 -39.56 16 15 C -0.24 -14.65 10.69 84.03 0.90 -13.75 16 16 H 0.08 4.80 7.83 -2.91 -0.02 4.78 16 17 C -0.07 -4.31 5.50 84.86 0.47 -3.84 16 18 N -0.95 -61.76 11.29 21.65 0.24 -61.52 16 19 Si 0.98 49.00 29.56 68.60 2.03 51.03 16 20 H -0.29 -14.55 7.11 99.48 0.71 -13.84 16 21 H -0.29 -13.98 7.11 99.48 0.71 -13.28 16 22 H -0.26 -12.21 7.11 99.48 0.71 -11.51 16 23 C 0.11 5.45 8.27 86.49 0.72 6.17 16 24 C -0.08 -2.52 9.23 22.53 0.21 -2.31 16 25 C -0.09 -1.99 5.13 -19.90 -0.10 -2.09 16 26 C -0.09 -1.54 5.37 29.85 0.16 -1.38 16 27 C -0.15 -2.25 9.72 71.98 0.70 -1.55 16 28 H 0.07 0.48 8.14 -2.39 -0.02 0.46 16 29 H 0.05 0.56 6.83 -2.39 -0.02 0.55 16 30 H 0.05 0.56 8.14 -2.38 -0.02 0.54 16 31 H 0.09 0.60 8.05 -2.39 -0.02 0.58 16 32 H 0.08 0.76 5.60 -2.39 -0.01 0.75 16 33 H 0.16 1.29 8.06 -2.91 -0.02 1.27 16 34 H 0.18 2.86 2.63 -2.91 -0.01 2.85 16 35 H 0.09 1.69 8.13 -2.39 -0.02 1.67 16 36 H 0.12 2.22 3.93 -3.05 -0.01 2.21 16 37 H 0.06 1.00 7.13 -2.39 -0.02 0.99 16 38 H 0.06 1.08 8.14 -2.38 -0.02 1.06 16 39 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 40 H 0.13 4.71 8.07 -2.39 -0.02 4.69 16 41 H 0.02 1.05 5.78 -2.38 -0.01 1.03 16 42 H 0.05 2.76 6.87 -2.39 -0.02 2.75 16 43 H 0.25 15.50 8.31 -92.71 -0.77 14.73 16 44 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 45 H 0.03 1.78 6.24 -2.39 -0.01 1.77 16 46 H 0.10 3.52 7.92 -2.91 -0.02 3.49 16 47 H 0.06 1.21 8.05 -2.38 -0.02 1.19 16 48 H 0.10 1.28 5.61 -2.39 -0.01 1.27 16 49 H 0.04 0.76 8.14 -2.39 -0.02 0.74 16 50 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 51 H 0.07 0.89 6.82 -2.39 -0.02 0.87 16 Total: -1.00 -84.11 389.97 4.92 -79.19 By element: Atomic # 1 Polarization: 14.89 SS G_CDS: 0.93 Total: 15.82 kcal Atomic # 6 Polarization: -0.68 SS G_CDS: 6.63 Total: 5.95 kcal Atomic # 7 Polarization: -118.67 SS G_CDS: -4.62 Total: -123.29 kcal Atomic # 8 Polarization: -28.65 SS G_CDS: -0.05 Total: -28.70 kcal Atomic # 14 Polarization: 49.00 SS G_CDS: 2.03 Total: 51.03 kcal Total: -84.11 4.92 -79.19 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000957479316.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.829 kcal (2) G-P(sol) polarization free energy of solvation -84.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.193 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds