Wall clock time and date at job start Tue Mar 31 2020 16:39:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50703 * 109.46669 * 2 1 4 4 C 1.38251 * 120.00013 * 264.99627 * 3 2 1 5 5 C 1.38218 * 120.00175 * 179.97438 * 4 3 2 6 6 C 1.38255 * 119.99653 * 0.02562 * 5 4 3 7 7 C 1.38212 * 120.00435 * 359.96071 * 6 5 4 8 8 C 1.38216 * 119.99869 * 84.73388 * 3 2 1 9 9 C 1.50697 * 119.99947 * 359.97438 * 8 3 2 10 10 C 1.50695 * 109.47179 * 85.00742 * 9 8 3 11 11 O 1.21288 * 120.00179 * 359.97438 * 10 9 8 12 12 N 1.34780 * 120.00210 * 180.02562 * 10 9 8 13 13 C 1.46502 * 120.00252 * 179.97438 * 12 10 9 14 14 H 1.09002 * 109.49246 * 325.06226 * 13 12 10 15 15 C 1.53189 * 109.49522 * 85.15778 * 13 12 10 16 16 N 1.46921 * 108.78047 * 65.32042 * 15 13 12 17 17 C 1.36943 * 120.63020 * 233.58805 * 16 15 13 18 18 H 1.07995 * 119.99974 * 151.83946 * 17 16 15 19 19 C 1.38807 * 119.99819 * 331.83208 * 17 16 15 20 20 N 1.31624 * 120.00341 * 343.08816 * 19 17 16 21 21 Si 1.86802 * 120.00083 * 163.07602 * 19 17 16 22 22 H 1.48505 * 109.46531 * 60.00307 * 21 19 17 23 23 H 1.48493 * 109.47513 * 180.02562 * 21 19 17 24 24 H 1.48496 * 109.47004 * 300.00842 * 21 19 17 25 25 C 1.46923 * 118.74160 * 53.60032 * 16 15 13 26 26 C 1.53198 * 108.77540 * 306.39824 * 25 16 15 27 27 C 1.53035 * 109.31222 * 54.63347 * 26 25 16 28 28 H 1.09000 * 109.46624 * 58.65573 * 27 26 25 29 29 C 1.53001 * 109.46026 * 178.61492 * 27 26 25 30 30 H 1.09002 * 109.46774 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47255 * 299.99598 * 1 2 3 32 32 H 1.08991 * 109.47316 * 59.99733 * 1 2 3 33 33 H 1.09003 * 109.47255 * 240.00402 * 2 1 3 34 34 H 1.08999 * 109.47825 * 119.99955 * 2 1 3 35 35 H 1.08002 * 120.00492 * 0.02562 * 4 3 2 36 36 H 1.07997 * 120.00014 * 180.02562 * 5 4 3 37 37 H 1.08000 * 119.99784 * 179.97438 * 6 5 4 38 38 H 1.07999 * 120.00232 * 180.02562 * 7 6 5 39 39 H 1.09005 * 109.46688 * 205.00367 * 9 8 3 40 40 H 1.08995 * 109.47126 * 324.99903 * 9 8 3 41 41 H 0.97001 * 119.99947 * 359.97438 * 12 10 9 42 42 H 1.09010 * 109.58318 * 185.10772 * 15 13 12 43 43 H 1.09004 * 109.59188 * 305.52670 * 15 13 12 44 44 H 0.96998 * 120.00242 * 179.97438 * 20 19 17 45 45 H 1.09000 * 109.59428 * 186.60894 * 25 16 15 46 46 H 1.09006 * 109.70544 * 66.25059 * 25 16 15 47 47 H 1.08990 * 109.49911 * 294.67787 * 26 25 16 48 48 H 1.08998 * 109.49798 * 174.58167 * 26 25 16 49 49 H 1.09003 * 109.47038 * 180.02562 * 29 27 26 50 50 H 1.09000 * 109.46999 * 300.06715 * 29 27 26 51 51 H 1.09000 * 109.47154 * 60.06407 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 6 2.3610 2.0378 -1.1927 5 6 2.8212 3.3412 -1.1928 6 6 2.9531 4.0277 0.0000 7 6 2.6241 3.4111 1.1924 8 6 2.1589 2.1090 1.1919 9 6 1.7943 1.4387 2.4914 10 6 2.9710 0.6422 2.9933 11 8 4.0040 0.6206 2.3579 12 7 2.8754 -0.0470 4.1475 13 6 4.0191 -0.8218 4.6351 14 1 4.5598 -1.2444 3.7882 15 6 4.9530 0.0929 5.4339 16 7 4.2495 0.5501 6.6400 17 6 4.1513 1.8856 6.9263 18 1 3.3115 2.2555 7.4957 19 6 5.1313 2.7639 6.4849 20 7 6.3003 2.3029 6.0930 21 14 4.7912 4.6003 6.4465 22 1 4.4764 5.0740 7.8184 23 1 5.9893 5.3153 5.9383 24 1 3.6371 4.8714 5.5523 25 6 3.6536 -0.4528 7.5332 26 6 2.7342 -1.3613 6.7108 27 6 3.5222 -1.9520 5.5395 28 1 4.3752 -2.5129 5.9216 29 6 2.6164 -2.8871 4.7357 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 2.2576 1.5017 -2.1246 36 1 3.0776 3.8232 -2.1246 37 1 3.3130 5.0459 0.0000 38 1 2.7267 3.9475 2.1241 39 1 1.5274 2.1961 3.2285 40 1 0.9464 0.7728 2.3314 41 1 2.0491 -0.0300 4.6555 42 1 5.8482 -0.4593 5.7202 43 1 5.2311 0.9530 4.8248 44 1 6.9849 2.9167 5.7842 45 1 3.0742 0.0473 8.3093 46 1 4.4413 -1.0499 7.9928 47 1 1.8953 -0.7798 6.3286 48 1 2.3608 -2.1679 7.3417 49 1 3.1777 -3.3083 3.9016 50 1 2.2624 -3.6921 5.3797 51 1 1.7637 -2.3264 4.3529 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000966903106.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:39:22 Heat of formation + Delta-G solvation = -26.467272 kcal Electronic energy + Delta-G solvation = -30028.745006 eV Core-core repulsion = 26312.858622 eV Total energy + Delta-G solvation = -3715.886384 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.37072 -40.30115 -38.86015 -35.89829 -35.19432 -34.27542 -33.47585 -32.80320 -30.95678 -30.32735 -29.02645 -28.25126 -25.80890 -24.72002 -23.94988 -23.03858 -22.71510 -21.92135 -21.06532 -20.24039 -18.64140 -18.15952 -17.37175 -17.04147 -16.89441 -16.47429 -15.97138 -15.70137 -15.58801 -15.28842 -14.89711 -14.75374 -14.64796 -14.58045 -14.33974 -14.13082 -13.92433 -13.85262 -13.52375 -13.13895 -13.02135 -12.99760 -12.83205 -12.68916 -12.63700 -12.57760 -12.45924 -12.26944 -12.14073 -11.93950 -11.67762 -11.55796 -11.54046 -11.28123 -11.04912 -10.79718 -10.52876 -9.87038 -9.69449 -9.46709 -8.63705 -7.86088 -5.31398 0.43443 0.50330 1.39534 1.42476 1.48372 1.82647 2.42625 2.48479 2.93471 3.29645 3.68525 3.70709 3.86385 3.89424 3.99530 4.01943 4.09700 4.14984 4.18387 4.29314 4.34068 4.51165 4.54179 4.55238 4.63105 4.69073 4.72797 4.74528 4.76942 4.85304 4.93897 4.97325 5.04237 5.10700 5.11941 5.17903 5.18539 5.23410 5.26713 5.29082 5.43288 5.49000 5.54239 5.59226 5.60947 5.61527 5.72610 5.75996 5.80492 6.14834 6.39111 6.77951 7.14601 7.48731 7.88358 8.39364 9.18492 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.010135 B = 0.005102 C = 0.003705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2761.962527 B = 5487.085486 C = 7556.280848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.085 4.085 3 C -0.075 4.075 4 C -0.127 4.127 5 C -0.123 4.123 6 C -0.138 4.138 7 C -0.131 4.131 8 C -0.075 4.075 9 C -0.099 4.099 10 C 0.512 3.488 11 O -0.585 6.585 12 N -0.691 5.691 13 C 0.140 3.860 14 H 0.058 0.942 15 C 0.172 3.828 16 N -0.599 5.599 17 C -0.249 4.249 18 H 0.071 0.929 19 C -0.051 4.051 20 N -0.935 5.935 21 Si 0.952 3.048 22 H -0.270 1.270 23 H -0.303 1.303 24 H -0.277 1.277 25 C 0.135 3.865 26 C -0.114 4.114 27 C -0.087 4.087 28 H 0.071 0.929 29 C -0.133 4.133 30 H 0.073 0.927 31 H 0.057 0.943 32 H 0.061 0.939 33 H 0.078 0.922 34 H 0.057 0.943 35 H 0.144 0.856 36 H 0.146 0.854 37 H 0.132 0.868 38 H 0.106 0.894 39 H 0.103 0.897 40 H 0.131 0.869 41 H 0.406 0.594 42 H -0.010 1.010 43 H 0.047 0.953 44 H 0.243 0.757 45 H 0.057 0.943 46 H 0.010 0.990 47 H 0.065 0.935 48 H 0.090 0.910 49 H 0.047 0.953 50 H 0.075 0.925 51 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.866 -7.055 -10.820 20.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.122 4.122 3 C -0.075 4.075 4 C -0.145 4.145 5 C -0.140 4.140 6 C -0.156 4.156 7 C -0.149 4.149 8 C -0.076 4.076 9 C -0.138 4.138 10 C 0.299 3.701 11 O -0.465 6.465 12 N -0.342 5.342 13 C 0.033 3.967 14 H 0.076 0.924 15 C 0.045 3.955 16 N -0.322 5.322 17 C -0.380 4.380 18 H 0.089 0.911 19 C -0.246 4.246 20 N -0.582 5.582 21 Si 0.781 3.219 22 H -0.195 1.195 23 H -0.230 1.230 24 H -0.203 1.203 25 C 0.010 3.990 26 C -0.153 4.153 27 C -0.107 4.107 28 H 0.089 0.911 29 C -0.191 4.191 30 H 0.092 0.908 31 H 0.076 0.924 32 H 0.080 0.920 33 H 0.097 0.903 34 H 0.075 0.925 35 H 0.161 0.839 36 H 0.164 0.836 37 H 0.150 0.850 38 H 0.124 0.876 39 H 0.121 0.879 40 H 0.148 0.852 41 H 0.243 0.757 42 H 0.008 0.992 43 H 0.065 0.935 44 H 0.052 0.948 45 H 0.076 0.924 46 H 0.028 0.972 47 H 0.084 0.916 48 H 0.108 0.892 49 H 0.066 0.934 50 H 0.094 0.906 51 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -15.018 -6.999 -11.268 20.037 hybrid contribution 0.786 1.518 0.557 1.798 sum -14.232 -5.480 -10.711 18.636 Atomic orbital electron populations 1.21740 0.92803 1.02771 1.02460 1.20566 0.97477 0.91483 1.02702 1.19957 0.98450 0.96605 0.92476 1.21304 0.99834 0.95438 0.97929 1.21412 0.99207 0.94998 0.98427 1.21307 1.00806 1.00859 0.92598 1.21184 0.99627 0.95538 0.98551 1.19318 1.00225 0.93940 0.94084 1.20744 0.97154 1.00258 0.95675 1.20865 0.89414 0.79073 0.80759 1.90678 1.32749 1.64062 1.59048 1.45713 1.16453 1.49292 1.22720 1.21382 0.87839 0.91902 0.95573 0.92355 1.20856 0.90910 0.95838 0.87904 1.44157 1.64304 1.01822 1.21943 1.19402 1.02784 0.83953 1.31822 0.91115 1.25725 0.94576 1.01698 1.02584 1.70177 1.04170 1.34494 1.49326 0.85555 0.76513 0.81507 0.78296 1.19541 1.23031 1.20313 1.21155 0.94642 0.90691 0.92522 1.21947 0.97736 0.98995 0.96658 1.21262 0.99348 0.94531 0.95510 0.91067 1.21747 0.99033 0.98774 0.99515 0.90799 0.92429 0.91969 0.90332 0.92479 0.83852 0.83625 0.85015 0.87612 0.87874 0.85158 0.75692 0.99160 0.93500 0.94750 0.92426 0.97241 0.91622 0.89158 0.93352 0.90639 0.92088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.24 9.72 71.98 0.70 -1.54 16 2 C -0.08 -1.86 5.38 29.85 0.16 -1.70 16 3 C -0.07 -2.03 5.13 -19.87 -0.10 -2.13 16 4 C -0.13 -3.10 9.68 22.27 0.22 -2.89 16 5 C -0.12 -3.00 10.05 22.27 0.22 -2.77 16 6 C -0.14 -3.90 10.05 22.27 0.22 -3.68 16 7 C -0.13 -4.30 9.68 22.27 0.22 -4.08 16 8 C -0.08 -2.34 4.37 -19.86 -0.09 -2.43 16 9 C -0.10 -2.85 5.16 29.10 0.15 -2.70 16 10 C 0.51 19.05 6.99 87.65 0.61 19.67 16 11 O -0.59 -27.52 15.70 -3.05 -0.05 -27.56 16 12 N -0.69 -23.58 4.25 -442.15 -1.88 -25.46 16 13 C 0.14 5.33 2.24 45.07 0.10 5.43 16 14 H 0.06 2.41 7.58 -2.39 -0.02 2.39 16 15 C 0.17 8.65 4.90 86.36 0.42 9.07 16 16 N -0.60 -29.16 2.91 -699.09 -2.03 -31.19 16 17 C -0.25 -13.50 9.58 84.03 0.81 -12.70 16 18 H 0.07 3.66 7.88 -2.91 -0.02 3.64 16 19 C -0.05 -2.91 4.92 84.86 0.42 -2.49 16 20 N -0.94 -58.55 11.20 21.65 0.24 -58.30 16 21 Si 0.95 46.43 29.59 68.60 2.03 48.46 16 22 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 23 H -0.30 -15.32 7.11 99.48 0.71 -14.61 16 24 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 25 C 0.13 5.16 6.52 86.37 0.56 5.72 16 26 C -0.11 -3.17 5.20 30.67 0.16 -3.01 16 27 C -0.09 -2.53 2.48 -10.77 -0.03 -2.55 16 28 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 29 C -0.13 -2.86 9.05 71.98 0.65 -2.20 16 30 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.06 0.91 6.77 -2.39 -0.02 0.89 16 32 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.08 1.55 8.05 -2.39 -0.02 1.53 16 34 H 0.06 1.44 6.43 -2.39 -0.02 1.42 16 35 H 0.14 2.64 8.06 -2.91 -0.02 2.62 16 36 H 0.15 2.62 8.06 -2.91 -0.02 2.60 16 37 H 0.13 3.20 8.06 -2.91 -0.02 3.17 16 38 H 0.11 3.63 8.06 -2.91 -0.02 3.61 16 39 H 0.10 2.89 8.05 -2.38 -0.02 2.87 16 40 H 0.13 2.79 5.60 -2.39 -0.01 2.77 16 41 H 0.41 11.64 6.64 -92.71 -0.62 11.03 16 42 H -0.01 -0.52 8.14 -2.38 -0.02 -0.54 16 43 H 0.05 2.84 6.06 -2.39 -0.01 2.82 16 44 H 0.24 15.13 8.31 -92.71 -0.77 14.36 16 45 H 0.06 2.13 7.93 -2.39 -0.02 2.11 16 46 H 0.01 0.38 8.14 -2.38 -0.02 0.36 16 47 H 0.07 1.71 6.40 -2.39 -0.02 1.70 16 48 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 49 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 50 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 51 H 0.06 1.21 7.54 -2.39 -0.02 1.19 16 Total: -1.00 -74.98 396.69 4.01 -70.97 By element: Atomic # 1 Polarization: 29.79 SS G_CDS: 0.29 Total: 30.08 kcal Atomic # 6 Polarization: -12.40 SS G_CDS: 5.41 Total: -6.99 kcal Atomic # 7 Polarization: -111.28 SS G_CDS: -3.67 Total: -114.96 kcal Atomic # 8 Polarization: -27.52 SS G_CDS: -0.05 Total: -27.56 kcal Atomic # 14 Polarization: 46.43 SS G_CDS: 2.03 Total: 48.46 kcal Total: -74.98 4.01 -70.97 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000966903106.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.501 kcal (2) G-P(sol) polarization free energy of solvation -74.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds