Wall clock time and date at job start Tue Mar 31 2020 16:39:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50703 * 109.47123 * 2 1 4 4 C 1.38254 * 119.99975 * 265.00029 * 3 2 1 5 5 C 1.38208 * 120.00205 * 179.97438 * 4 3 2 6 6 C 1.38254 * 119.99904 * 359.95890 * 5 4 3 7 7 C 1.38212 * 120.00057 * 0.02562 * 6 5 4 8 8 C 1.38207 * 119.99997 * 84.93189 * 3 2 1 9 9 C 1.50699 * 120.00134 * 0.04620 * 8 3 2 10 10 C 1.50703 * 109.47247 * 84.94857 * 9 8 3 11 11 O 1.21282 * 120.00058 * 0.02562 * 10 9 8 12 12 N 1.34776 * 120.00345 * 180.02562 * 10 9 8 13 13 C 1.46496 * 120.00385 * 180.02562 * 12 10 9 14 14 H 1.09009 * 109.49807 * 35.05916 * 13 12 10 15 15 C 1.53190 * 109.49668 * 274.99882 * 13 12 10 16 16 N 1.46925 * 108.77699 * 294.68394 * 15 13 12 17 17 C 1.36936 * 120.63395 * 126.36691 * 16 15 13 18 18 H 1.07997 * 119.99915 * 332.63270 * 17 16 15 19 19 C 1.38816 * 119.99651 * 152.63214 * 17 16 15 20 20 N 1.31624 * 119.99487 * 159.35531 * 19 17 16 21 21 Si 1.86800 * 120.00394 * 339.35520 * 19 17 16 22 22 H 1.48497 * 109.46814 * 92.90420 * 21 19 17 23 23 H 1.48493 * 109.47245 * 212.90281 * 21 19 17 24 24 H 1.48498 * 109.46954 * 332.90704 * 21 19 17 25 25 C 1.46931 * 118.73646 * 306.39094 * 16 15 13 26 26 C 1.53194 * 108.77338 * 53.60628 * 25 16 15 27 27 C 1.53037 * 109.49916 * 155.15896 * 13 12 10 28 28 H 1.09007 * 109.45638 * 178.60458 * 27 13 12 29 29 C 1.52996 * 109.46390 * 298.56356 * 27 13 12 30 30 H 1.09007 * 109.46757 * 300.00205 * 1 2 3 31 31 H 1.08999 * 109.47199 * 59.99682 * 1 2 3 32 32 H 1.08992 * 109.47215 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.46445 * 239.99967 * 2 1 3 34 34 H 1.08999 * 109.47199 * 120.00318 * 2 1 3 35 35 H 1.08002 * 120.00185 * 359.97438 * 4 3 2 36 36 H 1.07999 * 120.00328 * 179.97438 * 5 4 3 37 37 H 1.08002 * 120.00598 * 180.02562 * 6 5 4 38 38 H 1.08004 * 120.00241 * 179.69781 * 7 6 5 39 39 H 1.09000 * 109.47234 * 204.95061 * 9 8 3 40 40 H 1.09005 * 109.47233 * 324.95386 * 9 8 3 41 41 H 0.97003 * 119.99780 * 359.97438 * 12 10 9 42 42 H 1.08995 * 109.58586 * 54.46788 * 15 13 12 43 43 H 1.09000 * 109.59004 * 174.89387 * 15 13 12 44 44 H 0.96998 * 120.00079 * 179.97438 * 20 19 17 45 45 H 1.08992 * 109.58793 * 173.39543 * 25 16 15 46 46 H 1.08997 * 109.58785 * 293.68166 * 25 16 15 47 47 H 1.08996 * 109.49648 * 65.31902 * 26 25 16 48 48 H 1.09008 * 109.49401 * 185.37913 * 26 25 16 49 49 H 1.08997 * 109.46732 * 59.99875 * 29 27 13 50 50 H 1.08999 * 109.47419 * 179.97438 * 29 27 13 51 51 H 1.09005 * 109.46869 * 300.00541 * 29 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3612 2.0378 -1.1928 5 6 2.8214 3.3410 -1.1929 6 6 2.9521 4.0280 -0.0002 7 6 2.6231 3.4114 1.1921 8 6 2.1630 2.1076 1.1922 9 6 1.8042 1.4353 2.4923 10 6 2.9832 0.6382 2.9879 11 8 4.0136 0.6183 2.3486 12 7 2.8926 -0.0527 4.1415 13 6 4.0389 -0.8271 4.6236 14 1 4.9624 -0.3067 4.3693 15 6 4.0341 -2.2107 3.9660 16 7 2.8470 -2.9468 4.4217 17 6 1.9766 -3.4954 3.5181 18 1 1.8734 -3.0601 2.5351 19 6 1.2270 -4.6109 3.8656 20 7 0.1287 -4.8990 3.1999 21 14 1.7771 -5.7030 5.2777 22 1 1.1219 -5.2561 6.5332 23 1 1.3950 -7.1095 4.9935 24 1 3.2515 -5.6114 5.4290 25 6 2.6113 -3.0828 5.8656 26 6 2.6322 -1.6893 6.5019 27 6 3.9442 -0.9883 6.1425 28 1 4.7842 -1.5856 6.4973 29 6 3.9836 0.3903 6.8048 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0276 0.0005 33 1 1.8932 -0.5139 -0.8900 34 1 1.8934 -0.5139 0.8899 35 1 2.2584 1.5014 -2.1245 36 1 3.0786 3.8228 -2.1246 37 1 3.3113 5.0465 -0.0002 38 1 2.7299 3.9464 2.1243 39 1 1.5402 2.1915 3.2317 40 1 0.9557 0.7693 2.3349 41 1 2.0686 -0.0366 4.6531 42 1 4.0015 -2.1000 2.8822 43 1 4.9339 -2.7549 4.2529 44 1 -0.3950 -5.6786 3.4424 45 1 1.6401 -3.5474 6.0352 46 1 3.3938 -3.7000 6.3071 47 1 1.7925 -1.1050 6.1256 48 1 2.5539 -1.7829 7.5851 49 1 3.1442 0.9880 6.4497 50 1 3.9157 0.2757 7.8867 51 1 4.9186 0.8893 6.5498 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000966903108.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:39:29 Heat of formation + Delta-G solvation = -4.027578 kcal Electronic energy + Delta-G solvation = -29937.194232 eV Core-core repulsion = 26222.280906 eV Total energy + Delta-G solvation = -3714.913326 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.19097 -39.18382 -37.60795 -34.37691 -34.10148 -32.81599 -32.37361 -31.41550 -29.84576 -29.28548 -27.84974 -27.04297 -23.93140 -23.63801 -22.86006 -22.01758 -21.30834 -20.80189 -19.94448 -18.84316 -17.08812 -16.61098 -16.25581 -15.95853 -15.48615 -15.26802 -14.82612 -14.53354 -14.10999 -13.78607 -13.73333 -13.55567 -13.46224 -13.41024 -13.23138 -12.92214 -12.80060 -12.50418 -12.30238 -12.02281 -11.90884 -11.78869 -11.58519 -11.53813 -11.45726 -11.24491 -11.11980 -10.68845 -10.63472 -10.56580 -10.48649 -10.23276 -9.90834 -9.72362 -9.49610 -9.41075 -8.81569 -8.66534 -8.42486 -8.40996 -6.94610 -5.95593 -3.30491 1.46688 1.53769 3.07567 3.29429 3.47751 3.50172 3.58378 4.00006 4.51893 4.77575 4.89193 4.95204 4.98293 5.04338 5.08057 5.12196 5.18887 5.30120 5.30614 5.38534 5.42162 5.53613 5.63675 5.65766 5.72749 5.74653 5.75831 5.82505 5.85348 5.98564 6.04743 6.07173 6.10493 6.16881 6.22803 6.28132 6.32218 6.34097 6.39030 6.51196 6.53606 6.59526 6.60938 6.61792 6.69811 6.78868 6.84745 7.04345 7.14172 7.94362 7.99363 8.32218 8.68701 8.94135 9.72112 10.09504 11.20341 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.013278 B = 0.004207 C = 0.003415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2108.250015 B = 6653.858666 C = 8196.215894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.090 4.090 3 C -0.056 4.056 4 C -0.120 4.120 5 C -0.122 4.122 6 C -0.130 4.130 7 C -0.107 4.107 8 C -0.056 4.056 9 C -0.110 4.110 10 C 0.518 3.482 11 O -0.542 6.542 12 N -0.703 5.703 13 C 0.136 3.864 14 H 0.080 0.920 15 C 0.137 3.863 16 N -0.601 5.601 17 C -0.252 4.252 18 H 0.084 0.916 19 C 0.024 3.976 20 N -0.908 5.908 21 Si 0.881 3.119 22 H -0.290 1.290 23 H -0.305 1.305 24 H -0.272 1.272 25 C 0.123 3.877 26 C -0.129 4.129 27 C -0.094 4.094 28 H 0.078 0.922 29 C -0.143 4.143 30 H 0.054 0.946 31 H 0.050 0.950 32 H 0.065 0.935 33 H 0.070 0.930 34 H 0.079 0.921 35 H 0.119 0.881 36 H 0.117 0.883 37 H 0.117 0.883 38 H 0.117 0.883 39 H 0.095 0.905 40 H 0.107 0.893 41 H 0.399 0.601 42 H 0.068 0.932 43 H 0.029 0.971 44 H 0.261 0.739 45 H 0.073 0.927 46 H 0.024 0.976 47 H 0.061 0.939 48 H 0.057 0.943 49 H 0.052 0.948 50 H 0.051 0.949 51 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.056 15.989 0.278 16.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.128 4.128 3 C -0.056 4.056 4 C -0.138 4.138 5 C -0.140 4.140 6 C -0.148 4.148 7 C -0.125 4.125 8 C -0.057 4.057 9 C -0.149 4.149 10 C 0.304 3.696 11 O -0.420 6.420 12 N -0.354 5.354 13 C 0.029 3.971 14 H 0.098 0.902 15 C 0.010 3.990 16 N -0.325 5.325 17 C -0.380 4.380 18 H 0.101 0.899 19 C -0.175 4.175 20 N -0.551 5.551 21 Si 0.712 3.288 22 H -0.218 1.218 23 H -0.234 1.234 24 H -0.197 1.197 25 C -0.003 4.003 26 C -0.169 4.169 27 C -0.113 4.113 28 H 0.096 0.904 29 C -0.201 4.201 30 H 0.073 0.927 31 H 0.069 0.931 32 H 0.084 0.916 33 H 0.088 0.912 34 H 0.098 0.902 35 H 0.137 0.863 36 H 0.135 0.865 37 H 0.135 0.865 38 H 0.135 0.865 39 H 0.113 0.887 40 H 0.126 0.874 41 H 0.234 0.766 42 H 0.086 0.914 43 H 0.047 0.953 44 H 0.071 0.929 45 H 0.091 0.909 46 H 0.042 0.958 47 H 0.080 0.920 48 H 0.075 0.925 49 H 0.072 0.928 50 H 0.070 0.930 51 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 3.664 15.835 -0.226 16.255 hybrid contribution -0.156 -0.787 1.091 1.355 sum 3.509 15.048 0.865 15.476 Atomic orbital electron populations 1.21732 0.94541 1.02489 1.01379 1.20593 0.96162 0.92272 1.03726 1.19779 0.97370 0.95945 0.92477 1.20988 1.00260 0.95126 0.97448 1.21047 1.00220 0.94879 0.97836 1.20987 1.01409 0.99754 0.92645 1.20924 0.99117 0.94560 0.97936 1.19131 0.99502 0.93767 0.93286 1.20764 0.98465 1.00084 0.95625 1.20278 0.89060 0.79522 0.80763 1.90687 1.31105 1.64156 1.56012 1.45871 1.16895 1.48817 1.23852 1.21468 0.88910 0.93690 0.92984 0.90188 1.21327 0.89403 0.89653 0.98577 1.44303 1.24580 1.62981 1.00587 1.18865 1.14843 1.07398 0.96919 0.89880 1.25263 0.97088 0.97485 0.97679 1.69829 1.14004 1.28457 1.42834 0.86982 0.79435 0.80255 0.82092 1.21822 1.23350 1.19694 1.21359 0.99844 0.94027 0.85022 1.22078 0.96570 0.98792 0.99433 1.21313 0.99257 0.96456 0.94323 0.90410 1.21826 1.01512 0.96791 0.99935 0.92726 0.93054 0.91566 0.91156 0.90232 0.86316 0.86520 0.86526 0.86540 0.88697 0.87444 0.76598 0.91365 0.95331 0.92887 0.90916 0.95766 0.92018 0.92467 0.92843 0.92957 0.93053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.96 9.72 37.16 0.36 -1.60 16 2 C -0.09 -1.36 5.38 -27.88 -0.15 -1.51 16 3 C -0.06 -0.81 5.13 -104.63 -0.54 -1.35 16 4 C -0.12 -1.58 9.68 -39.59 -0.38 -1.96 16 5 C -0.12 -1.45 10.05 -39.59 -0.40 -1.85 16 6 C -0.13 -1.54 10.05 -39.58 -0.40 -1.94 16 7 C -0.11 -1.38 9.68 -39.58 -0.38 -1.76 16 8 C -0.06 -0.80 4.37 -104.63 -0.46 -1.26 16 9 C -0.11 -1.47 5.16 -29.03 -0.15 -1.62 16 10 C 0.52 8.44 6.99 -10.98 -0.08 8.36 16 11 O -0.54 -10.69 15.70 5.56 0.09 -10.61 16 12 N -0.70 -10.89 4.25 -53.69 -0.23 -11.11 16 13 C 0.14 2.20 2.24 -67.82 -0.15 2.05 16 14 H 0.08 1.32 7.58 -51.92 -0.39 0.93 16 15 C 0.14 2.73 6.12 -3.71 -0.02 2.71 16 16 N -0.60 -13.49 2.69 -172.32 -0.46 -13.95 16 17 C -0.25 -6.74 10.04 -15.06 -0.15 -6.89 16 18 H 0.08 2.43 8.06 -52.49 -0.42 2.00 16 19 C 0.02 0.66 5.23 -17.43 -0.09 0.57 16 20 N -0.91 -26.99 13.97 55.49 0.78 -26.22 16 21 Si 0.88 21.93 24.34 -169.99 -4.14 17.79 16 22 H -0.29 -6.93 6.62 56.52 0.37 -6.56 16 23 H -0.31 -7.83 7.11 56.52 0.40 -7.43 16 24 H -0.27 -6.70 6.64 56.52 0.38 -6.33 16 25 C 0.12 2.50 4.21 -3.71 -0.02 2.49 16 26 C -0.13 -2.02 5.20 -26.61 -0.14 -2.16 16 27 C -0.09 -1.33 2.48 -90.58 -0.22 -1.55 16 28 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 29 C -0.14 -1.65 9.05 37.16 0.34 -1.31 16 30 H 0.05 0.71 6.80 -51.92 -0.35 0.36 16 31 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.07 1.02 8.05 -51.93 -0.42 0.60 16 34 H 0.08 1.41 6.42 -51.93 -0.33 1.08 16 35 H 0.12 1.36 8.06 -52.49 -0.42 0.93 16 36 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 37 H 0.12 1.09 8.06 -52.49 -0.42 0.66 16 38 H 0.12 1.27 8.06 -52.48 -0.42 0.85 16 39 H 0.09 1.00 8.05 -51.93 -0.42 0.58 16 40 H 0.11 1.45 5.62 -51.93 -0.29 1.16 16 41 H 0.40 5.75 6.63 -40.82 -0.27 5.48 16 42 H 0.07 1.50 7.93 -51.93 -0.41 1.09 16 43 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 44 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 45 H 0.07 1.64 4.49 -51.93 -0.23 1.41 16 46 H 0.02 0.50 7.07 -51.93 -0.37 0.13 16 47 H 0.06 0.95 6.40 -51.93 -0.33 0.62 16 48 H 0.06 0.79 8.14 -51.92 -0.42 0.37 16 49 H 0.05 0.60 7.54 -51.93 -0.39 0.21 16 50 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 51 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 390.26 15.07 5.88 5.88 Total: -1.00 -31.51 390.26 -9.59 -41.10 By element: Atomic # 1 Polarization: 16.19 SS G_CDS: -8.48 Total: 7.71 kcal Atomic # 6 Polarization: -7.56 SS G_CDS: -3.03 Total: -10.59 kcal Atomic # 7 Polarization: -51.37 SS G_CDS: 0.08 Total: -51.28 kcal Atomic # 8 Polarization: -10.69 SS G_CDS: 0.09 Total: -10.61 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -4.14 Total: 17.79 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -31.51 -9.59 -41.10 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000966903108.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.073 kcal (2) G-P(sol) polarization free energy of solvation -31.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.101 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds