Wall clock time and date at job start Tue Mar 31 2020 16:39:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50703 * 109.47123 * 2 1 4 4 C 1.38254 * 119.99975 * 265.00029 * 3 2 1 5 5 C 1.38208 * 120.00205 * 179.97438 * 4 3 2 6 6 C 1.38254 * 119.99904 * 359.95890 * 5 4 3 7 7 C 1.38212 * 120.00057 * 0.02562 * 6 5 4 8 8 C 1.38207 * 119.99997 * 84.93189 * 3 2 1 9 9 C 1.50699 * 120.00134 * 0.04620 * 8 3 2 10 10 C 1.50703 * 109.47247 * 84.94857 * 9 8 3 11 11 O 1.21282 * 120.00058 * 0.02562 * 10 9 8 12 12 N 1.34776 * 120.00345 * 180.02562 * 10 9 8 13 13 C 1.46496 * 120.00385 * 180.02562 * 12 10 9 14 14 H 1.09009 * 109.49807 * 35.05916 * 13 12 10 15 15 C 1.53190 * 109.49668 * 274.99882 * 13 12 10 16 16 N 1.46925 * 108.77699 * 294.68394 * 15 13 12 17 17 C 1.36936 * 120.63395 * 126.36691 * 16 15 13 18 18 H 1.07997 * 119.99915 * 332.63270 * 17 16 15 19 19 C 1.38816 * 119.99651 * 152.63214 * 17 16 15 20 20 N 1.31624 * 119.99487 * 159.35531 * 19 17 16 21 21 Si 1.86800 * 120.00394 * 339.35520 * 19 17 16 22 22 H 1.48497 * 109.46814 * 92.90420 * 21 19 17 23 23 H 1.48493 * 109.47245 * 212.90281 * 21 19 17 24 24 H 1.48498 * 109.46954 * 332.90704 * 21 19 17 25 25 C 1.46931 * 118.73646 * 306.39094 * 16 15 13 26 26 C 1.53194 * 108.77338 * 53.60628 * 25 16 15 27 27 C 1.53037 * 109.49916 * 155.15896 * 13 12 10 28 28 H 1.09007 * 109.45638 * 178.60458 * 27 13 12 29 29 C 1.52996 * 109.46390 * 298.56356 * 27 13 12 30 30 H 1.09007 * 109.46757 * 300.00205 * 1 2 3 31 31 H 1.08999 * 109.47199 * 59.99682 * 1 2 3 32 32 H 1.08992 * 109.47215 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.46445 * 239.99967 * 2 1 3 34 34 H 1.08999 * 109.47199 * 120.00318 * 2 1 3 35 35 H 1.08002 * 120.00185 * 359.97438 * 4 3 2 36 36 H 1.07999 * 120.00328 * 179.97438 * 5 4 3 37 37 H 1.08002 * 120.00598 * 180.02562 * 6 5 4 38 38 H 1.08004 * 120.00241 * 179.69781 * 7 6 5 39 39 H 1.09000 * 109.47234 * 204.95061 * 9 8 3 40 40 H 1.09005 * 109.47233 * 324.95386 * 9 8 3 41 41 H 0.97003 * 119.99780 * 359.97438 * 12 10 9 42 42 H 1.08995 * 109.58586 * 54.46788 * 15 13 12 43 43 H 1.09000 * 109.59004 * 174.89387 * 15 13 12 44 44 H 0.96998 * 120.00079 * 179.97438 * 20 19 17 45 45 H 1.08992 * 109.58793 * 173.39543 * 25 16 15 46 46 H 1.08997 * 109.58785 * 293.68166 * 25 16 15 47 47 H 1.08996 * 109.49648 * 65.31902 * 26 25 16 48 48 H 1.09008 * 109.49401 * 185.37913 * 26 25 16 49 49 H 1.08997 * 109.46732 * 59.99875 * 29 27 13 50 50 H 1.08999 * 109.47419 * 179.97438 * 29 27 13 51 51 H 1.09005 * 109.46869 * 300.00541 * 29 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3612 2.0378 -1.1928 5 6 2.8214 3.3410 -1.1929 6 6 2.9521 4.0280 -0.0002 7 6 2.6231 3.4114 1.1921 8 6 2.1630 2.1076 1.1922 9 6 1.8042 1.4353 2.4923 10 6 2.9832 0.6382 2.9879 11 8 4.0136 0.6183 2.3486 12 7 2.8926 -0.0527 4.1415 13 6 4.0389 -0.8271 4.6236 14 1 4.9624 -0.3067 4.3693 15 6 4.0341 -2.2107 3.9660 16 7 2.8470 -2.9468 4.4217 17 6 1.9766 -3.4954 3.5181 18 1 1.8734 -3.0601 2.5351 19 6 1.2270 -4.6109 3.8656 20 7 0.1287 -4.8990 3.1999 21 14 1.7771 -5.7030 5.2777 22 1 1.1219 -5.2561 6.5332 23 1 1.3950 -7.1095 4.9935 24 1 3.2515 -5.6114 5.4290 25 6 2.6113 -3.0828 5.8656 26 6 2.6322 -1.6893 6.5019 27 6 3.9442 -0.9883 6.1425 28 1 4.7842 -1.5856 6.4973 29 6 3.9836 0.3903 6.8048 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0276 0.0005 33 1 1.8932 -0.5139 -0.8900 34 1 1.8934 -0.5139 0.8899 35 1 2.2584 1.5014 -2.1245 36 1 3.0786 3.8228 -2.1246 37 1 3.3113 5.0465 -0.0002 38 1 2.7299 3.9464 2.1243 39 1 1.5402 2.1915 3.2317 40 1 0.9557 0.7693 2.3349 41 1 2.0686 -0.0366 4.6531 42 1 4.0015 -2.1000 2.8822 43 1 4.9339 -2.7549 4.2529 44 1 -0.3950 -5.6786 3.4424 45 1 1.6401 -3.5474 6.0352 46 1 3.3938 -3.7000 6.3071 47 1 1.7925 -1.1050 6.1256 48 1 2.5539 -1.7829 7.5851 49 1 3.1442 0.9880 6.4497 50 1 3.9157 0.2757 7.8867 51 1 4.9186 0.8893 6.5498 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000966903108.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:39:28 Heat of formation + Delta-G solvation = -22.014171 kcal Electronic energy + Delta-G solvation = -29937.974189 eV Core-core repulsion = 26222.280906 eV Total energy + Delta-G solvation = -3715.693283 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.42520 -40.36342 -38.99093 -36.04751 -35.19929 -34.19002 -33.46224 -33.35324 -31.24198 -30.35017 -29.21051 -28.29348 -25.58189 -24.77965 -24.28975 -23.17837 -22.83975 -21.95425 -21.05399 -20.32524 -18.72104 -18.11998 -17.34632 -17.19363 -17.07669 -16.72944 -15.95847 -15.84857 -15.53051 -15.29741 -15.17145 -14.88058 -14.80663 -14.63634 -14.36917 -14.21451 -14.01007 -13.87178 -13.69723 -13.59692 -13.13895 -13.01616 -12.91164 -12.77375 -12.66902 -12.63206 -12.34303 -12.20088 -12.17096 -11.84059 -11.69566 -11.56429 -11.54954 -11.35521 -11.14713 -10.81719 -10.70284 -9.95956 -9.65555 -9.44526 -8.84126 -8.13316 -5.44175 0.47026 0.54751 1.29261 1.42868 1.50850 1.77492 2.39335 2.42652 2.95690 3.10243 3.33171 3.70835 3.78228 3.85833 3.91833 4.01188 4.03561 4.10168 4.14055 4.30778 4.34415 4.38407 4.45851 4.52316 4.53383 4.56988 4.65647 4.69435 4.71888 4.76350 4.77914 4.86576 4.96884 4.99975 5.00832 5.03455 5.10316 5.13846 5.16363 5.21718 5.25854 5.34341 5.40087 5.49049 5.61947 5.65034 5.70643 5.80632 5.89469 6.14169 6.18012 6.70603 6.94425 7.40274 7.65160 8.04775 9.06450 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.013278 B = 0.004207 C = 0.003415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2108.250015 B = 6653.858666 C = 8196.215894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.085 4.085 3 C -0.078 4.078 4 C -0.134 4.134 5 C -0.123 4.123 6 C -0.131 4.131 7 C -0.115 4.115 8 C -0.075 4.075 9 C -0.103 4.103 10 C 0.516 3.484 11 O -0.580 6.580 12 N -0.698 5.698 13 C 0.143 3.857 14 H 0.081 0.919 15 C 0.137 3.863 16 N -0.609 5.609 17 C -0.235 4.235 18 H 0.041 0.959 19 C -0.031 4.031 20 N -0.955 5.955 21 Si 0.946 3.054 22 H -0.270 1.270 23 H -0.317 1.317 24 H -0.266 1.266 25 C 0.116 3.884 26 C -0.120 4.120 27 C -0.086 4.086 28 H 0.086 0.914 29 C -0.135 4.135 30 H 0.059 0.941 31 H 0.070 0.930 32 H 0.048 0.952 33 H 0.065 0.935 34 H 0.042 0.958 35 H 0.129 0.871 36 H 0.145 0.855 37 H 0.146 0.854 38 H 0.137 0.863 39 H 0.129 0.871 40 H 0.100 0.900 41 H 0.405 0.595 42 H 0.032 0.968 43 H 0.037 0.963 44 H 0.259 0.741 45 H 0.051 0.949 46 H 0.031 0.969 47 H 0.062 0.938 48 H 0.089 0.911 49 H 0.056 0.944 50 H 0.072 0.928 51 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.983 18.587 2.572 19.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.122 4.122 3 C -0.078 4.078 4 C -0.151 4.151 5 C -0.141 4.141 6 C -0.148 4.148 7 C -0.133 4.133 8 C -0.075 4.075 9 C -0.143 4.143 10 C 0.303 3.697 11 O -0.460 6.460 12 N -0.349 5.349 13 C 0.037 3.963 14 H 0.099 0.901 15 C 0.011 3.989 16 N -0.334 5.334 17 C -0.365 4.365 18 H 0.059 0.941 19 C -0.226 4.226 20 N -0.601 5.601 21 Si 0.775 3.225 22 H -0.196 1.196 23 H -0.247 1.247 24 H -0.191 1.191 25 C -0.009 4.009 26 C -0.159 4.159 27 C -0.105 4.105 28 H 0.105 0.895 29 C -0.192 4.192 30 H 0.078 0.922 31 H 0.089 0.911 32 H 0.067 0.933 33 H 0.084 0.916 34 H 0.061 0.939 35 H 0.147 0.853 36 H 0.162 0.838 37 H 0.164 0.836 38 H 0.155 0.845 39 H 0.147 0.853 40 H 0.118 0.882 41 H 0.242 0.758 42 H 0.051 0.949 43 H 0.055 0.945 44 H 0.068 0.932 45 H 0.069 0.931 46 H 0.048 0.952 47 H 0.080 0.920 48 H 0.107 0.893 49 H 0.075 0.925 50 H 0.091 0.909 51 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 4.605 18.464 2.117 19.147 hybrid contribution -0.384 -1.550 0.258 1.618 sum 4.220 16.914 2.375 17.593 Atomic orbital electron populations 1.21670 0.93568 1.01657 1.02526 1.20465 0.97055 0.93053 1.01643 1.19818 0.98897 0.95399 0.93698 1.21219 1.00464 0.96114 0.97351 1.21412 0.99114 0.94260 0.99293 1.21400 1.00276 1.01029 0.92130 1.21235 0.98601 0.94053 0.99420 1.19293 1.00458 0.94671 0.93121 1.20756 0.96662 1.00366 0.96479 1.20796 0.89304 0.79267 0.80306 1.90659 1.32854 1.65538 1.56978 1.45861 1.17030 1.48244 1.23798 1.21321 0.89282 0.91042 0.94649 0.90129 1.21378 0.88663 0.91944 0.96954 1.44327 1.24762 1.63041 1.01256 1.18670 1.14683 1.06931 0.96208 0.94117 1.25826 0.97167 0.98795 1.00819 1.69964 1.15522 1.29149 1.45463 0.85939 0.79128 0.77380 0.80006 1.19616 1.24696 1.19110 1.21465 0.98692 0.97196 0.83509 1.21985 0.97522 0.95559 1.00871 1.21277 0.98660 0.98378 0.92197 0.89547 1.21746 1.02013 0.94622 1.00841 0.92242 0.91148 0.93301 0.91597 0.93895 0.85326 0.83768 0.83581 0.84535 0.85314 0.88165 0.75821 0.94902 0.94531 0.93161 0.93091 0.95156 0.91951 0.89291 0.92491 0.90932 0.92526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.94 9.72 71.98 0.70 -3.24 16 2 C -0.08 -2.76 5.38 29.85 0.16 -2.59 16 3 C -0.08 -2.33 5.13 -19.87 -0.10 -2.43 16 4 C -0.13 -3.46 9.68 22.27 0.22 -3.24 16 5 C -0.12 -2.68 10.05 22.27 0.22 -2.45 16 6 C -0.13 -2.75 10.05 22.27 0.22 -2.53 16 7 C -0.12 -2.74 9.68 22.27 0.22 -2.52 16 8 C -0.07 -2.10 4.37 -19.87 -0.09 -2.19 16 9 C -0.10 -2.75 5.16 29.10 0.15 -2.60 16 10 C 0.52 17.02 6.99 87.66 0.61 17.63 16 11 O -0.58 -23.52 15.70 -3.04 -0.05 -23.57 16 12 N -0.70 -21.34 4.25 -442.17 -1.88 -23.22 16 13 C 0.14 4.52 2.24 45.07 0.10 4.62 16 14 H 0.08 2.58 7.58 -2.38 -0.02 2.57 16 15 C 0.14 5.54 6.12 86.36 0.53 6.07 16 16 N -0.61 -27.66 2.69 -699.11 -1.88 -29.54 16 17 C -0.24 -13.15 10.04 84.03 0.84 -12.31 16 18 H 0.04 2.58 8.06 -2.91 -0.02 2.56 16 19 C -0.03 -1.80 5.23 84.86 0.44 -1.36 16 20 N -0.95 -59.16 13.97 21.65 0.30 -58.86 16 21 Si 0.95 45.98 24.34 68.60 1.67 47.65 16 22 H -0.27 -12.11 6.62 99.48 0.66 -11.45 16 23 H -0.32 -15.99 7.11 99.48 0.71 -15.29 16 24 H -0.27 -12.55 6.64 99.48 0.66 -11.89 16 25 C 0.12 4.52 4.21 86.36 0.36 4.88 16 26 C -0.12 -3.38 5.20 30.67 0.16 -3.22 16 27 C -0.09 -2.15 2.48 -10.77 -0.03 -2.18 16 28 H 0.09 2.07 8.14 -2.38 -0.02 2.05 16 29 C -0.13 -2.53 9.05 71.98 0.65 -1.88 16 30 H 0.06 1.62 6.80 -2.38 -0.02 1.60 16 31 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 32 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 33 H 0.07 2.10 8.05 -2.39 -0.02 2.08 16 34 H 0.04 1.68 6.42 -2.39 -0.02 1.66 16 35 H 0.13 2.92 8.06 -2.91 -0.02 2.90 16 36 H 0.14 2.27 8.06 -2.91 -0.02 2.25 16 37 H 0.15 2.17 8.06 -2.91 -0.02 2.14 16 38 H 0.14 2.59 8.06 -2.91 -0.02 2.57 16 39 H 0.13 2.46 8.05 -2.39 -0.02 2.44 16 40 H 0.10 2.81 5.62 -2.38 -0.01 2.79 16 41 H 0.41 11.26 6.63 -92.71 -0.62 10.65 16 42 H 0.03 1.53 7.93 -2.39 -0.02 1.51 16 43 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 44 H 0.26 15.37 8.31 -92.71 -0.77 14.60 16 45 H 0.05 2.22 4.49 -2.39 -0.01 2.21 16 46 H 0.03 1.16 7.07 -2.39 -0.02 1.15 16 47 H 0.06 1.76 6.40 -2.39 -0.02 1.74 16 48 H 0.09 2.02 8.14 -2.38 -0.02 2.00 16 49 H 0.06 1.04 7.54 -2.39 -0.02 1.02 16 50 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 51 H 0.06 1.04 8.14 -2.38 -0.02 1.02 16 Total: -1.00 -72.21 390.26 3.75 -68.46 By element: Atomic # 1 Polarization: 30.42 SS G_CDS: 0.21 Total: 30.62 kcal Atomic # 6 Polarization: -16.93 SS G_CDS: 5.38 Total: -11.56 kcal Atomic # 7 Polarization: -108.16 SS G_CDS: -3.46 Total: -111.62 kcal Atomic # 8 Polarization: -23.52 SS G_CDS: -0.05 Total: -23.57 kcal Atomic # 14 Polarization: 45.98 SS G_CDS: 1.67 Total: 47.65 kcal Total: -72.21 3.75 -68.46 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000966903108.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.450 kcal (2) G-P(sol) polarization free energy of solvation -72.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds