Wall clock time and date at job start Tue Mar 31 2020 16:39:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50701 * 109.47126 * 2 1 4 4 C 1.38260 * 119.99749 * 264.97215 * 3 2 1 5 5 C 1.38214 * 119.99923 * 179.97438 * 4 3 2 6 6 C 1.38260 * 119.99968 * 359.97438 * 5 4 3 7 7 C 1.38211 * 119.99697 * 359.81971 * 6 5 4 8 8 C 1.38217 * 120.00349 * 84.99842 * 3 2 1 9 9 C 1.50705 * 119.99530 * 359.97438 * 8 3 2 10 10 C 1.50705 * 109.46882 * 85.00565 * 9 8 3 11 11 O 1.21276 * 120.00027 * 359.97438 * 10 9 8 12 12 N 1.34769 * 119.99671 * 179.97438 * 10 9 8 13 13 C 1.46499 * 120.00091 * 179.97438 * 12 10 9 14 14 H 1.09002 * 109.49615 * 324.93383 * 13 12 10 15 15 C 1.53188 * 109.49774 * 84.99571 * 13 12 10 16 16 N 1.46933 * 108.77319 * 174.58551 * 15 13 12 17 17 C 1.36939 * 120.62711 * 126.41646 * 16 15 13 18 18 H 1.08001 * 119.99849 * 332.60612 * 17 16 15 19 19 C 1.38815 * 120.00059 * 152.60804 * 17 16 15 20 20 N 1.31619 * 119.99784 * 159.34499 * 19 17 16 21 21 Si 1.86797 * 119.99778 * 339.34317 * 19 17 16 22 22 H 1.48501 * 109.46815 * 92.94264 * 21 19 17 23 23 H 1.48504 * 109.46873 * 212.93920 * 21 19 17 24 24 H 1.48500 * 109.47293 * 332.94418 * 21 19 17 25 25 C 1.46924 * 118.74307 * 306.39348 * 16 15 13 26 26 C 1.53189 * 108.77148 * 53.60763 * 25 16 15 27 27 C 1.53039 * 109.31482 * 305.36433 * 26 25 16 28 28 H 1.08997 * 109.46162 * 301.34474 * 27 26 25 29 29 C 1.53008 * 109.45925 * 181.38970 * 27 26 25 30 30 H 1.08998 * 109.47125 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47485 * 300.00625 * 1 2 3 32 32 H 1.09007 * 109.46595 * 60.00640 * 1 2 3 33 33 H 1.09001 * 109.47485 * 239.99375 * 2 1 3 34 34 H 1.09001 * 109.46927 * 119.99650 * 2 1 3 35 35 H 1.07996 * 119.99842 * 0.02562 * 4 3 2 36 36 H 1.07997 * 120.00231 * 180.02562 * 5 4 3 37 37 H 1.08000 * 119.99773 * 180.02562 * 6 5 4 38 38 H 1.08005 * 119.99350 * 180.22853 * 7 6 5 39 39 H 1.08996 * 109.47505 * 325.00280 * 9 8 3 40 40 H 1.09000 * 109.46483 * 205.00121 * 9 8 3 41 41 H 0.97006 * 120.00192 * 359.97438 * 12 10 9 42 42 H 1.09001 * 109.58427 * 54.80628 * 15 13 12 43 43 H 1.08993 * 109.71020 * 294.44375 * 15 13 12 44 44 H 0.96995 * 119.99495 * 180.02562 * 20 19 17 45 45 H 1.08999 * 109.58667 * 293.82245 * 25 16 15 46 46 H 1.08998 * 109.70174 * 173.46584 * 25 16 15 47 47 H 1.09000 * 109.50220 * 65.31859 * 26 25 16 48 48 H 1.09002 * 109.49783 * 185.41431 * 26 25 16 49 49 H 1.08994 * 109.47477 * 59.99858 * 29 27 26 50 50 H 1.08998 * 109.46656 * 180.02562 * 29 27 26 51 51 H 1.08999 * 109.46568 * 299.99752 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3617 2.0376 -1.1928 5 6 2.8219 3.3408 -1.1929 6 6 2.9524 4.0280 -0.0002 7 6 2.6191 3.4128 1.1917 8 6 2.1643 2.1072 1.1924 9 6 1.8053 1.4349 2.4925 10 6 2.9843 0.6375 2.9879 11 8 4.0143 0.6168 2.3481 12 7 2.8938 -0.0526 4.1420 13 6 4.0396 -0.8282 4.6234 14 1 4.5747 -1.2522 3.7737 15 6 4.9798 0.0862 5.4150 16 7 6.0527 -0.7303 5.9990 17 6 7.3672 -0.4112 5.7854 18 1 7.6557 0.1177 4.8890 19 6 8.3288 -0.7676 6.7209 20 7 9.5946 -0.8420 6.3679 21 14 7.8263 -1.1416 8.4807 22 1 7.5891 -2.6001 8.6284 23 1 8.9096 -0.7202 9.4050 24 1 6.5808 -0.4020 8.8077 25 6 5.6886 -1.8953 6.8168 26 6 4.7404 -2.7874 6.0094 27 6 3.5470 -1.9566 5.5324 28 1 3.0334 -1.5306 6.3942 29 6 2.5805 -2.8524 4.7549 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8901 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 2.2586 1.5012 -2.1245 36 1 3.0788 3.8228 -2.1246 37 1 3.3116 5.0465 -0.0004 38 1 2.7176 3.9509 2.1230 39 1 0.9567 0.7692 2.3351 40 1 1.5417 2.1912 3.2318 41 1 2.0701 -0.0357 4.6540 42 1 4.4234 0.5816 6.2107 43 1 5.4109 0.8345 4.7500 44 1 10.2664 -1.0914 7.0216 45 1 5.1899 -1.5614 7.7268 46 1 6.5859 -2.4567 7.0768 47 1 5.2690 -3.1935 5.1470 48 1 4.3867 -3.6048 6.6378 49 1 2.2286 -3.6554 5.4024 50 1 1.7307 -2.2607 4.4147 51 1 3.0940 -3.2790 3.8933 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000966903109.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:39:32 Heat of formation + Delta-G solvation = -4.664864 kcal Electronic energy + Delta-G solvation = -29130.561640 eV Core-core repulsion = 25415.620679 eV Total energy + Delta-G solvation = -3714.940961 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.33379 -39.20673 -37.73758 -34.61925 -34.40997 -33.10355 -32.59215 -31.39505 -29.77147 -29.42721 -27.89354 -27.15437 -24.05617 -23.84076 -22.94509 -21.96303 -21.28367 -20.76670 -20.07774 -19.49376 -16.95807 -16.84665 -16.49640 -16.16817 -15.75124 -15.18496 -15.03679 -14.66880 -14.09283 -13.95088 -13.86826 -13.79859 -13.62110 -13.42460 -13.26481 -13.10102 -13.03410 -12.62287 -12.24022 -12.17908 -12.11840 -12.00957 -11.88913 -11.65899 -11.41474 -11.28481 -10.95461 -10.89695 -10.86688 -10.77397 -10.64577 -10.12754 -9.91433 -9.74499 -9.62643 -9.41666 -8.95737 -8.80662 -8.60821 -8.48552 -6.94668 -5.90512 -3.26926 1.30213 1.38341 2.85386 3.31695 3.33200 3.49369 3.52282 3.80564 4.52914 4.55540 4.64759 4.80621 4.85991 4.91853 4.98599 5.04624 5.09836 5.11930 5.16013 5.22305 5.26554 5.28045 5.40112 5.45476 5.45927 5.55020 5.73444 5.75234 5.77489 5.82824 5.84454 5.91862 5.94033 6.03359 6.05036 6.10751 6.11739 6.27504 6.35630 6.43976 6.47914 6.50286 6.57879 6.60985 6.62641 6.66753 6.80464 6.96915 6.98811 7.72313 8.00172 8.37802 8.47982 8.98374 9.75653 10.11423 11.25566 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.015890 B = 0.003165 C = 0.002813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1761.732517 B = 8843.677137 C = 9952.563902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.088 4.088 3 C -0.064 4.064 4 C -0.119 4.119 5 C -0.120 4.120 6 C -0.124 4.124 7 C -0.104 4.104 8 C -0.060 4.060 9 C -0.107 4.107 10 C 0.510 3.490 11 O -0.521 6.521 12 N -0.724 5.724 13 C 0.133 3.867 14 H 0.089 0.911 15 C 0.145 3.855 16 N -0.601 5.601 17 C -0.258 4.258 18 H 0.086 0.914 19 C 0.023 3.977 20 N -0.908 5.908 21 Si 0.883 3.117 22 H -0.289 1.289 23 H -0.304 1.304 24 H -0.271 1.271 25 C 0.122 3.878 26 C -0.126 4.126 27 C -0.092 4.092 28 H 0.068 0.932 29 C -0.143 4.143 30 H 0.057 0.943 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.071 0.929 34 H 0.072 0.928 35 H 0.119 0.881 36 H 0.119 0.881 37 H 0.120 0.880 38 H 0.120 0.880 39 H 0.101 0.899 40 H 0.099 0.901 41 H 0.394 0.606 42 H 0.021 0.979 43 H 0.067 0.933 44 H 0.262 0.738 45 H 0.025 0.975 46 H 0.074 0.926 47 H 0.067 0.933 48 H 0.059 0.941 49 H 0.052 0.948 50 H 0.049 0.951 51 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.049 2.906 -9.948 25.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.126 4.126 3 C -0.064 4.064 4 C -0.137 4.137 5 C -0.138 4.138 6 C -0.142 4.142 7 C -0.122 4.122 8 C -0.060 4.060 9 C -0.147 4.147 10 C 0.295 3.705 11 O -0.396 6.396 12 N -0.376 5.376 13 C 0.027 3.973 14 H 0.107 0.893 15 C 0.017 3.983 16 N -0.325 5.325 17 C -0.386 4.386 18 H 0.104 0.896 19 C -0.175 4.175 20 N -0.551 5.551 21 Si 0.714 3.286 22 H -0.216 1.216 23 H -0.232 1.232 24 H -0.197 1.197 25 C -0.003 4.003 26 C -0.166 4.166 27 C -0.111 4.111 28 H 0.086 0.914 29 C -0.201 4.201 30 H 0.076 0.924 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.090 0.910 34 H 0.091 0.909 35 H 0.137 0.863 36 H 0.137 0.863 37 H 0.138 0.862 38 H 0.138 0.862 39 H 0.119 0.881 40 H 0.118 0.882 41 H 0.227 0.773 42 H 0.039 0.961 43 H 0.085 0.915 44 H 0.072 0.928 45 H 0.043 0.957 46 H 0.092 0.908 47 H 0.086 0.914 48 H 0.077 0.923 49 H 0.071 0.929 50 H 0.069 0.931 51 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -22.084 2.878 -10.378 24.570 hybrid contribution -0.439 -0.169 1.360 1.439 sum -22.523 2.710 -9.018 24.412 Atomic orbital electron populations 1.21770 0.94821 1.01695 1.02064 1.20560 0.95778 0.92985 1.03247 1.19645 0.98522 0.95629 0.92652 1.20958 1.00278 0.95198 0.97296 1.21089 0.99820 0.94844 0.98006 1.21063 1.00567 1.00026 0.92567 1.20986 0.98509 0.94499 0.98208 1.19099 0.99940 0.93927 0.93076 1.20764 0.97810 1.00102 0.96006 1.20402 0.89348 0.79832 0.80917 1.90784 1.30741 1.61788 1.56282 1.46098 1.16921 1.50692 1.23892 1.21677 0.86247 0.91737 0.97590 0.89259 1.21215 0.89368 0.92749 0.94936 1.44284 1.02612 1.26624 1.58960 1.18957 0.80500 1.35689 1.03467 0.89620 1.25266 0.94898 0.99515 0.97859 1.69847 1.00640 1.50434 1.34160 0.86948 0.77412 0.77335 0.86954 1.21634 1.23190 1.19657 1.21391 0.97419 0.88752 0.92771 1.22072 0.95893 0.97774 1.00880 1.21298 0.96588 0.95523 0.97672 0.91400 1.21831 0.98776 0.99236 1.00214 0.92362 0.92564 0.92539 0.91027 0.90927 0.86331 0.86320 0.86206 0.86192 0.88104 0.88249 0.77305 0.96147 0.91484 0.92798 0.95734 0.90771 0.91413 0.92283 0.92922 0.93149 0.92740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 9.72 37.16 0.36 -0.75 16 2 C -0.09 -0.89 5.38 -27.88 -0.15 -1.04 16 3 C -0.06 -0.76 5.13 -104.62 -0.54 -1.29 16 4 C -0.12 -1.33 9.68 -39.58 -0.38 -1.71 16 5 C -0.12 -1.28 10.05 -39.58 -0.40 -1.68 16 6 C -0.12 -1.38 10.05 -39.58 -0.40 -1.78 16 7 C -0.10 -1.24 9.68 -39.59 -0.38 -1.62 16 8 C -0.06 -0.72 4.37 -104.62 -0.46 -1.18 16 9 C -0.11 -1.09 5.16 -29.03 -0.15 -1.24 16 10 C 0.51 7.25 6.99 -10.99 -0.08 7.17 16 11 O -0.52 -10.13 15.70 5.56 0.09 -10.04 16 12 N -0.72 -9.33 4.37 -53.69 -0.23 -9.57 16 13 C 0.13 2.22 2.06 -67.81 -0.14 2.08 16 14 H 0.09 1.79 7.58 -51.93 -0.39 1.39 16 15 C 0.14 2.99 6.09 -3.71 -0.02 2.96 16 16 N -0.60 -14.63 2.77 -172.32 -0.48 -15.11 16 17 C -0.26 -7.48 10.03 -15.06 -0.15 -7.63 16 18 H 0.09 2.72 8.06 -52.49 -0.42 2.29 16 19 C 0.02 0.69 5.23 -17.43 -0.09 0.60 16 20 N -0.91 -28.49 13.97 55.49 0.78 -27.72 16 21 Si 0.88 22.61 24.35 -169.99 -4.14 18.47 16 22 H -0.29 -7.07 6.62 56.52 0.37 -6.69 16 23 H -0.30 -7.92 7.11 56.52 0.40 -7.52 16 24 H -0.27 -6.80 6.63 56.52 0.37 -6.43 16 25 C 0.12 2.65 4.20 -3.71 -0.02 2.63 16 26 C -0.13 -2.17 5.36 -26.61 -0.14 -2.31 16 27 C -0.09 -1.33 2.27 -90.57 -0.21 -1.53 16 28 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 29 C -0.14 -1.66 9.02 37.16 0.34 -1.32 16 30 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.06 0.40 6.80 -51.93 -0.35 0.04 16 32 H 0.06 0.41 8.14 -51.92 -0.42 -0.01 16 33 H 0.07 0.69 8.05 -51.93 -0.42 0.27 16 34 H 0.07 0.82 6.42 -51.93 -0.33 0.49 16 35 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 36 H 0.12 1.00 8.06 -52.49 -0.42 0.57 16 37 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 38 H 0.12 1.26 8.06 -52.48 -0.42 0.84 16 39 H 0.10 0.80 5.62 -51.93 -0.29 0.51 16 40 H 0.10 0.80 8.05 -51.93 -0.42 0.38 16 41 H 0.39 3.70 8.30 -40.82 -0.34 3.36 16 42 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.07 1.54 7.93 -51.93 -0.41 1.12 16 44 H 0.26 7.78 8.31 -40.82 -0.34 7.44 16 45 H 0.02 0.52 7.07 -51.93 -0.37 0.15 16 46 H 0.07 1.77 4.50 -51.93 -0.23 1.54 16 47 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 48 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 49 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 50 H 0.05 0.49 7.35 -51.93 -0.38 0.11 16 51 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 393.42 15.07 5.93 5.93 Total: -1.00 -34.71 393.42 -9.69 -44.40 By element: Atomic # 1 Polarization: 11.90 SS G_CDS: -8.63 Total: 3.28 kcal Atomic # 6 Polarization: -6.64 SS G_CDS: -3.01 Total: -9.65 kcal Atomic # 7 Polarization: -52.46 SS G_CDS: 0.06 Total: -52.39 kcal Atomic # 8 Polarization: -10.13 SS G_CDS: 0.09 Total: -10.04 kcal Atomic # 14 Polarization: 22.61 SS G_CDS: -4.14 Total: 18.47 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -34.71 -9.69 -44.40 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000966903109.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.736 kcal (2) G-P(sol) polarization free energy of solvation -34.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds