Wall clock time and date at job start Tue Mar 31 2020 16:39:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50692 * 109.47401 * 2 1 4 4 C 1.38265 * 119.99825 * 269.97575 * 3 2 1 5 5 C 1.38211 * 119.99840 * 179.97438 * 4 3 2 6 6 C 1.38252 * 120.00270 * 359.79489 * 5 4 3 7 7 C 1.38220 * 119.99674 * 0.47724 * 6 5 4 8 8 C 1.50704 * 119.99869 * 179.76775 * 7 6 5 9 9 C 1.50699 * 109.46991 * 269.73358 * 8 7 6 10 10 O 1.21282 * 120.00443 * 359.97438 * 9 8 7 11 11 N 1.34778 * 119.99920 * 180.02562 * 9 8 7 12 12 C 1.46500 * 120.00087 * 179.97438 * 11 9 8 13 13 H 1.09004 * 109.49933 * 325.06079 * 12 11 9 14 14 C 1.53187 * 109.52696 * 85.14353 * 12 11 9 15 15 N 1.46925 * 108.77832 * 65.33013 * 14 12 11 16 16 C 1.36930 * 120.63342 * 233.61378 * 15 14 12 17 17 H 1.08000 * 120.00187 * 151.84283 * 16 15 14 18 18 C 1.38812 * 119.99999 * 331.83427 * 16 15 14 19 19 N 1.31626 * 119.99924 * 343.08160 * 18 16 15 20 20 Si 1.86798 * 120.00218 * 163.08037 * 18 16 15 21 21 H 1.48505 * 109.47097 * 59.99816 * 20 18 16 22 22 H 1.48495 * 109.47256 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.47078 * 300.00266 * 20 18 16 24 24 C 1.46926 * 118.73364 * 53.61160 * 15 14 12 25 25 C 1.53201 * 108.77657 * 306.38949 * 24 15 14 26 26 C 1.53041 * 109.30915 * 54.63965 * 25 24 15 27 27 H 1.08995 * 109.46248 * 58.63904 * 26 25 24 28 28 C 1.52997 * 109.45811 * 178.61403 * 26 25 24 29 29 C 1.38209 * 120.00241 * 89.99417 * 3 2 1 30 30 H 1.08999 * 109.47115 * 300.00435 * 1 2 3 31 31 H 1.08999 * 109.46783 * 60.00269 * 1 2 3 32 32 H 1.09001 * 109.46794 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.47115 * 239.99565 * 2 1 3 34 34 H 1.08999 * 109.46783 * 119.99731 * 2 1 3 35 35 H 1.08003 * 119.99910 * 0.02562 * 4 3 2 36 36 H 1.08000 * 119.99456 * 180.02562 * 5 4 3 37 37 H 1.08004 * 120.00378 * 180.25407 * 6 5 4 38 38 H 1.08998 * 109.47011 * 149.73443 * 8 7 6 39 39 H 1.08997 * 109.46931 * 29.72602 * 8 7 6 40 40 H 0.97000 * 120.00306 * 359.97438 * 11 9 8 41 41 H 1.09002 * 109.58932 * 185.11992 * 14 12 11 42 42 H 1.09008 * 109.58627 * 305.39988 * 14 12 11 43 43 H 0.96996 * 119.99928 * 179.97438 * 19 18 16 44 44 H 1.09000 * 109.58413 * 186.60583 * 24 15 14 45 45 H 1.08993 * 109.59327 * 66.17929 * 24 15 14 46 46 H 1.08997 * 109.49477 * 294.69053 * 25 24 15 47 47 H 1.09003 * 109.49663 * 174.58600 * 25 24 15 48 48 H 1.09007 * 109.46912 * 60.00038 * 28 26 25 49 49 H 1.09002 * 109.47085 * 179.97438 * 28 26 25 50 50 H 1.08998 * 109.47252 * 300.00002 * 28 26 25 51 51 H 1.07995 * 120.00341 * 359.97438 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.2634 2.0723 -1.1974 5 6 2.7236 3.3755 -1.1974 6 6 2.9491 4.0291 -0.0002 7 6 2.7236 3.3758 1.1968 8 6 2.9743 4.0864 2.5019 9 6 4.3974 3.8497 2.9374 10 8 5.1354 3.1704 2.2555 11 7 4.8500 4.3920 4.0853 12 6 6.2333 4.1614 4.5090 13 1 6.5393 3.1558 4.2206 14 6 7.1520 5.1875 3.8384 15 7 6.8100 6.5263 4.3379 16 6 6.5179 7.5422 3.4675 17 1 5.8573 8.3407 3.7716 18 6 7.0709 7.5458 2.1943 19 7 8.1126 6.7869 1.9271 20 14 6.3368 8.6278 0.8602 21 1 6.4025 10.0495 1.2840 22 1 7.1036 8.4501 -0.3989 23 1 4.9202 8.2434 0.6350 24 6 6.7874 6.7541 5.7892 25 6 5.8727 5.7104 6.4381 26 6 6.3334 4.3095 6.0290 27 1 7.3674 4.1618 6.3407 28 6 5.4434 3.2633 6.7028 29 6 2.2627 2.0723 1.1969 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 2.0833 1.5631 -2.1327 36 1 2.9036 3.8845 -2.1328 37 1 3.3048 5.0488 -0.0002 38 1 2.2933 3.7024 3.2614 39 1 2.8075 5.1556 2.3713 40 1 4.2598 4.9350 4.6310 41 1 8.1905 4.9615 4.0804 42 1 7.0125 5.1517 2.7579 43 1 8.4988 6.7892 1.0373 44 1 6.4055 7.7538 5.9962 45 1 7.7961 6.6558 6.1904 46 1 4.8471 5.8680 6.1045 47 1 5.9222 5.8074 7.5227 48 1 4.4093 3.4112 6.3915 49 1 5.7711 2.2654 6.4112 50 1 5.5155 3.3679 7.7854 51 1 2.0822 1.5635 2.1322 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000967006431.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:39:35 Heat of formation + Delta-G solvation = -11.534223 kcal Electronic energy + Delta-G solvation = -29361.553830 eV Core-core repulsion = 25646.314992 eV Total energy + Delta-G solvation = -3715.238838 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -39.87775 -39.03715 -37.42001 -34.38598 -34.07754 -32.73752 -32.20749 -31.00166 -29.56966 -29.21103 -27.58416 -26.84938 -24.04539 -23.93212 -22.44983 -21.86941 -21.06750 -20.84006 -19.71178 -18.61770 -16.89560 -16.60532 -16.27031 -15.68586 -15.31880 -14.90720 -14.72404 -14.34655 -13.98587 -13.82622 -13.71171 -13.58161 -13.44636 -13.23387 -13.05450 -12.97436 -12.72269 -12.55546 -12.00267 -11.93759 -11.78515 -11.68201 -11.54777 -11.35598 -11.26179 -11.03340 -10.89845 -10.78364 -10.71784 -10.67621 -10.49434 -10.22626 -9.90697 -9.67184 -9.47317 -9.25425 -8.60142 -8.45074 -8.39606 -8.26828 -6.61988 -5.74609 -3.18011 1.51827 1.58159 3.29016 3.38222 3.44013 3.46059 3.72406 4.11601 4.51235 4.71473 4.78642 4.97183 5.12321 5.20689 5.23845 5.25924 5.28080 5.34230 5.38485 5.43068 5.49506 5.50262 5.58071 5.59945 5.67902 5.74420 5.80709 5.87212 5.89566 5.94977 6.02548 6.03741 6.15856 6.22158 6.26158 6.32151 6.38844 6.46574 6.57825 6.64958 6.69908 6.71613 6.76985 6.81375 6.91134 7.05428 7.18948 7.43706 7.70829 7.82673 8.20274 8.49141 8.91844 9.23841 9.88102 10.44353 11.33108 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.011113 B = 0.004122 C = 0.003220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2518.927893 B = 6791.547169 C = 8694.510908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.083 4.083 3 C -0.086 4.086 4 C -0.123 4.123 5 C -0.116 4.116 6 C -0.106 4.106 7 C -0.052 4.052 8 C -0.105 4.105 9 C 0.515 3.485 10 O -0.539 6.539 11 N -0.700 5.700 12 C 0.127 3.873 13 H 0.073 0.927 14 C 0.161 3.839 15 N -0.586 5.586 16 C -0.255 4.255 17 H 0.062 0.938 18 C 0.008 3.992 19 N -0.897 5.897 20 Si 0.897 3.103 21 H -0.283 1.283 22 H -0.291 1.291 23 H -0.285 1.285 24 C 0.142 3.858 25 C -0.128 4.128 26 C -0.094 4.094 27 H 0.076 0.924 28 C -0.143 4.143 29 C -0.104 4.104 30 H 0.055 0.945 31 H 0.054 0.946 32 H 0.054 0.946 33 H 0.069 0.931 34 H 0.070 0.930 35 H 0.116 0.884 36 H 0.119 0.881 37 H 0.121 0.879 38 H 0.094 0.906 39 H 0.102 0.898 40 H 0.393 0.607 41 H 0.023 0.977 42 H 0.096 0.904 43 H 0.254 0.746 44 H 0.053 0.947 45 H 0.017 0.983 46 H 0.054 0.946 47 H 0.052 0.948 48 H 0.050 0.950 49 H 0.049 0.951 50 H 0.049 0.951 51 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.916 -10.168 2.587 17.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.121 4.121 3 C -0.086 4.086 4 C -0.141 4.141 5 C -0.134 4.134 6 C -0.124 4.124 7 C -0.052 4.052 8 C -0.145 4.145 9 C 0.300 3.700 10 O -0.416 6.416 11 N -0.351 5.351 12 C 0.021 3.979 13 H 0.091 0.909 14 C 0.035 3.965 15 N -0.309 5.309 16 C -0.385 4.385 17 H 0.080 0.920 18 C -0.192 4.192 19 N -0.540 5.540 20 Si 0.727 3.273 21 H -0.210 1.210 22 H -0.216 1.216 23 H -0.211 1.211 24 C 0.016 3.984 25 C -0.168 4.168 26 C -0.113 4.113 27 H 0.094 0.906 28 C -0.201 4.201 29 C -0.122 4.122 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.134 0.866 36 H 0.137 0.863 37 H 0.139 0.861 38 H 0.113 0.887 39 H 0.120 0.880 40 H 0.228 0.772 41 H 0.040 0.960 42 H 0.114 0.886 43 H 0.064 0.936 44 H 0.071 0.929 45 H 0.035 0.965 46 H 0.073 0.927 47 H 0.071 0.929 48 H 0.069 0.931 49 H 0.068 0.932 50 H 0.068 0.932 51 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -13.257 -10.656 1.939 17.119 hybrid contribution -0.429 0.983 -0.488 1.178 sum -13.686 -9.673 1.451 16.822 Atomic orbital electron populations 1.21744 0.94970 1.01382 1.02146 1.20508 0.95901 0.92952 1.02690 1.19757 0.99808 0.95929 0.93153 1.20926 1.00975 0.95024 0.97207 1.21056 0.99541 0.94935 0.97867 1.21059 0.98954 1.00360 0.92028 1.19282 0.97963 0.94166 0.93834 1.20697 0.95527 1.02580 0.95731 1.20203 0.88867 0.79836 0.81073 1.90699 1.58173 1.39629 1.53091 1.45810 1.13585 1.52221 1.23500 1.21740 0.82657 1.00411 0.93074 0.90856 1.21177 0.92855 0.82168 1.00343 1.43955 1.81035 1.06641 0.99286 1.19026 1.21897 1.03411 0.94142 0.91984 1.25010 0.95855 0.98937 0.99350 1.69990 1.21037 1.42219 1.20790 0.86462 0.78757 0.80269 0.81813 1.20980 1.21637 1.21118 1.20929 0.95634 0.95811 0.86055 1.22077 1.00261 0.95533 0.98891 1.21309 0.99966 0.95194 0.94832 0.90603 1.21839 0.99883 0.98708 0.99624 1.20765 1.00141 0.93949 0.97348 0.92589 0.92661 0.92652 0.91243 0.91177 0.86601 0.86285 0.86122 0.88725 0.88016 0.77194 0.95950 0.88558 0.93560 0.92877 0.96525 0.92698 0.92884 0.93060 0.93187 0.93239 0.86618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 9.90 37.16 0.37 -0.85 16 2 C -0.08 -0.83 6.06 -27.88 -0.17 -1.00 16 3 C -0.09 -1.12 5.13 -104.63 -0.54 -1.65 16 4 C -0.12 -1.60 9.70 -39.58 -0.38 -1.99 16 5 C -0.12 -1.65 10.05 -39.59 -0.40 -2.05 16 6 C -0.11 -1.70 9.70 -39.58 -0.38 -2.08 16 7 C -0.05 -0.80 4.37 -104.62 -0.46 -1.26 16 8 C -0.11 -1.53 5.83 -29.03 -0.17 -1.70 16 9 C 0.51 9.54 7.79 -10.99 -0.09 9.46 16 10 O -0.54 -12.27 15.70 5.56 0.09 -12.18 16 11 N -0.70 -12.19 4.25 -53.69 -0.23 -12.42 16 12 C 0.13 2.41 2.24 -67.81 -0.15 2.26 16 13 H 0.07 1.47 7.58 -51.93 -0.39 1.08 16 14 C 0.16 3.87 4.90 -3.71 -0.02 3.85 16 15 N -0.59 -14.09 2.91 -172.32 -0.50 -14.59 16 16 C -0.26 -6.83 9.58 -15.06 -0.14 -6.98 16 17 H 0.06 1.63 7.89 -52.49 -0.41 1.21 16 18 C 0.01 0.22 4.92 -17.43 -0.09 0.13 16 19 N -0.90 -26.55 11.19 55.49 0.62 -25.93 16 20 Si 0.90 21.92 29.59 -169.99 -5.03 16.89 16 21 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 22 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 23 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 24 C 0.14 2.81 6.52 -3.71 -0.02 2.79 16 25 C -0.13 -1.99 5.20 -26.61 -0.14 -2.13 16 26 C -0.09 -1.46 2.48 -90.58 -0.22 -1.69 16 27 H 0.08 1.21 8.14 -51.93 -0.42 0.78 16 28 C -0.14 -1.82 9.05 37.16 0.34 -1.48 16 29 C -0.10 -1.46 9.36 -39.59 -0.37 -1.83 16 30 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 33 H 0.07 0.64 8.09 -51.93 -0.42 0.22 16 34 H 0.07 0.68 8.09 -51.93 -0.42 0.26 16 35 H 0.12 1.23 8.06 -52.48 -0.42 0.81 16 36 H 0.12 1.46 8.06 -52.49 -0.42 1.04 16 37 H 0.12 1.98 8.06 -52.48 -0.42 1.56 16 38 H 0.09 1.06 8.09 -51.93 -0.42 0.64 16 39 H 0.10 1.42 8.08 -51.93 -0.42 1.00 16 40 H 0.39 6.06 6.64 -40.82 -0.27 5.78 16 41 H 0.02 0.58 8.14 -51.93 -0.42 0.15 16 42 H 0.10 2.74 6.07 -51.92 -0.31 2.42 16 43 H 0.25 7.41 8.31 -40.82 -0.34 7.07 16 44 H 0.05 1.03 7.93 -51.93 -0.41 0.62 16 45 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 46 H 0.05 0.83 6.40 -51.93 -0.33 0.50 16 47 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 48 H 0.05 0.62 7.54 -51.93 -0.39 0.23 16 49 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 50 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 51 H 0.12 1.43 8.06 -52.49 -0.42 1.01 16 LS Contribution 403.95 15.07 6.09 6.09 Total: -1.00 -32.17 403.95 -10.84 -43.01 By element: Atomic # 1 Polarization: 16.17 SS G_CDS: -8.84 Total: 7.33 kcal Atomic # 6 Polarization: -5.16 SS G_CDS: -3.04 Total: -8.20 kcal Atomic # 7 Polarization: -52.83 SS G_CDS: -0.11 Total: -52.94 kcal Atomic # 8 Polarization: -12.27 SS G_CDS: 0.09 Total: -12.18 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.03 Total: 16.89 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -32.17 -10.84 -43.01 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000967006431.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.475 kcal (2) G-P(sol) polarization free energy of solvation -32.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds