Wall clock time and date at job start Tue Mar 31 2020 16:39:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50692 * 109.47401 * 2 1 4 4 C 1.38265 * 119.99825 * 269.97575 * 3 2 1 5 5 C 1.38211 * 119.99840 * 179.97438 * 4 3 2 6 6 C 1.38252 * 120.00270 * 359.79489 * 5 4 3 7 7 C 1.38220 * 119.99674 * 0.47724 * 6 5 4 8 8 C 1.50704 * 119.99869 * 179.76775 * 7 6 5 9 9 C 1.50699 * 109.46991 * 269.73358 * 8 7 6 10 10 O 1.21282 * 120.00443 * 359.97438 * 9 8 7 11 11 N 1.34778 * 119.99920 * 180.02562 * 9 8 7 12 12 C 1.46500 * 120.00087 * 179.97438 * 11 9 8 13 13 H 1.09004 * 109.49933 * 325.06079 * 12 11 9 14 14 C 1.53187 * 109.52696 * 85.14353 * 12 11 9 15 15 N 1.46925 * 108.77832 * 65.33013 * 14 12 11 16 16 C 1.36930 * 120.63342 * 233.61378 * 15 14 12 17 17 H 1.08000 * 120.00187 * 151.84283 * 16 15 14 18 18 C 1.38812 * 119.99999 * 331.83427 * 16 15 14 19 19 N 1.31626 * 119.99924 * 343.08160 * 18 16 15 20 20 Si 1.86798 * 120.00218 * 163.08037 * 18 16 15 21 21 H 1.48505 * 109.47097 * 59.99816 * 20 18 16 22 22 H 1.48495 * 109.47256 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.47078 * 300.00266 * 20 18 16 24 24 C 1.46926 * 118.73364 * 53.61160 * 15 14 12 25 25 C 1.53201 * 108.77657 * 306.38949 * 24 15 14 26 26 C 1.53041 * 109.30915 * 54.63965 * 25 24 15 27 27 H 1.08995 * 109.46248 * 58.63904 * 26 25 24 28 28 C 1.52997 * 109.45811 * 178.61403 * 26 25 24 29 29 C 1.38209 * 120.00241 * 89.99417 * 3 2 1 30 30 H 1.08999 * 109.47115 * 300.00435 * 1 2 3 31 31 H 1.08999 * 109.46783 * 60.00269 * 1 2 3 32 32 H 1.09001 * 109.46794 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.47115 * 239.99565 * 2 1 3 34 34 H 1.08999 * 109.46783 * 119.99731 * 2 1 3 35 35 H 1.08003 * 119.99910 * 0.02562 * 4 3 2 36 36 H 1.08000 * 119.99456 * 180.02562 * 5 4 3 37 37 H 1.08004 * 120.00378 * 180.25407 * 6 5 4 38 38 H 1.08998 * 109.47011 * 149.73443 * 8 7 6 39 39 H 1.08997 * 109.46931 * 29.72602 * 8 7 6 40 40 H 0.97000 * 120.00306 * 359.97438 * 11 9 8 41 41 H 1.09002 * 109.58932 * 185.11992 * 14 12 11 42 42 H 1.09008 * 109.58627 * 305.39988 * 14 12 11 43 43 H 0.96996 * 119.99928 * 179.97438 * 19 18 16 44 44 H 1.09000 * 109.58413 * 186.60583 * 24 15 14 45 45 H 1.08993 * 109.59327 * 66.17929 * 24 15 14 46 46 H 1.08997 * 109.49477 * 294.69053 * 25 24 15 47 47 H 1.09003 * 109.49663 * 174.58600 * 25 24 15 48 48 H 1.09007 * 109.46912 * 60.00038 * 28 26 25 49 49 H 1.09002 * 109.47085 * 179.97438 * 28 26 25 50 50 H 1.08998 * 109.47252 * 300.00002 * 28 26 25 51 51 H 1.07995 * 120.00341 * 359.97438 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.2634 2.0723 -1.1974 5 6 2.7236 3.3755 -1.1974 6 6 2.9491 4.0291 -0.0002 7 6 2.7236 3.3758 1.1968 8 6 2.9743 4.0864 2.5019 9 6 4.3974 3.8497 2.9374 10 8 5.1354 3.1704 2.2555 11 7 4.8500 4.3920 4.0853 12 6 6.2333 4.1614 4.5090 13 1 6.5393 3.1558 4.2206 14 6 7.1520 5.1875 3.8384 15 7 6.8100 6.5263 4.3379 16 6 6.5179 7.5422 3.4675 17 1 5.8573 8.3407 3.7716 18 6 7.0709 7.5458 2.1943 19 7 8.1126 6.7869 1.9271 20 14 6.3368 8.6278 0.8602 21 1 6.4025 10.0495 1.2840 22 1 7.1036 8.4501 -0.3989 23 1 4.9202 8.2434 0.6350 24 6 6.7874 6.7541 5.7892 25 6 5.8727 5.7104 6.4381 26 6 6.3334 4.3095 6.0290 27 1 7.3674 4.1618 6.3407 28 6 5.4434 3.2633 6.7028 29 6 2.2627 2.0723 1.1969 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 2.0833 1.5631 -2.1327 36 1 2.9036 3.8845 -2.1328 37 1 3.3048 5.0488 -0.0002 38 1 2.2933 3.7024 3.2614 39 1 2.8075 5.1556 2.3713 40 1 4.2598 4.9350 4.6310 41 1 8.1905 4.9615 4.0804 42 1 7.0125 5.1517 2.7579 43 1 8.4988 6.7892 1.0373 44 1 6.4055 7.7538 5.9962 45 1 7.7961 6.6558 6.1904 46 1 4.8471 5.8680 6.1045 47 1 5.9222 5.8074 7.5227 48 1 4.4093 3.4112 6.3915 49 1 5.7711 2.2654 6.4112 50 1 5.5155 3.3679 7.7854 51 1 2.0822 1.5635 2.1322 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000967006431.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:39:34 Heat of formation + Delta-G solvation = -28.894486 kcal Electronic energy + Delta-G solvation = -29362.306627 eV Core-core repulsion = 25646.314992 eV Total energy + Delta-G solvation = -3715.991636 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.24648 -40.26918 -38.93619 -35.90628 -35.29985 -34.27798 -33.34407 -32.80037 -30.96672 -30.32579 -29.02789 -28.24224 -25.80243 -24.78736 -23.95725 -23.06241 -22.72299 -22.02017 -20.88596 -20.23814 -18.63965 -18.13238 -17.42395 -16.92334 -16.83384 -16.49751 -15.87929 -15.75926 -15.67068 -15.26134 -14.88282 -14.83651 -14.68730 -14.56764 -14.37456 -14.13833 -13.97622 -13.77262 -13.54539 -13.13450 -13.01039 -12.98145 -12.84175 -12.67875 -12.60266 -12.56830 -12.46418 -12.26672 -12.13374 -11.93783 -11.68392 -11.63710 -11.54654 -11.28427 -11.05089 -10.80211 -10.52646 -9.86903 -9.68505 -9.50058 -8.63573 -7.85778 -5.31105 0.42100 0.49737 1.40109 1.42981 1.48936 1.83077 2.42338 2.48845 2.93060 3.29955 3.68375 3.70595 3.82841 3.89343 3.98576 4.01322 4.12712 4.17136 4.21876 4.31596 4.37599 4.52439 4.54994 4.58041 4.59043 4.68785 4.69093 4.73371 4.80030 4.84997 4.93436 4.97037 5.03404 5.10856 5.11759 5.17870 5.18576 5.23086 5.26520 5.28930 5.41129 5.48629 5.54142 5.56058 5.61157 5.68086 5.71722 5.72709 5.80289 6.13678 6.39225 6.78264 7.14790 7.48973 7.88460 8.39650 9.18801 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.011113 B = 0.004122 C = 0.003220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2518.927893 B = 6791.547169 C = 8694.510908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.082 4.082 3 C -0.088 4.088 4 C -0.128 4.128 5 C -0.127 4.127 6 C -0.138 4.138 7 C -0.070 4.070 8 C -0.096 4.096 9 C 0.509 3.491 10 O -0.588 6.588 11 N -0.690 5.690 12 C 0.139 3.861 13 H 0.058 0.942 14 C 0.173 3.827 15 N -0.599 5.599 16 C -0.250 4.250 17 H 0.071 0.929 18 C -0.050 4.050 19 N -0.935 5.935 20 Si 0.953 3.047 21 H -0.270 1.270 22 H -0.303 1.303 23 H -0.277 1.277 24 C 0.135 3.865 25 C -0.115 4.115 26 C -0.087 4.087 27 H 0.071 0.929 28 C -0.133 4.133 29 C -0.114 4.114 30 H 0.053 0.947 31 H 0.054 0.946 32 H 0.072 0.928 33 H 0.079 0.921 34 H 0.074 0.926 35 H 0.141 0.859 36 H 0.132 0.868 37 H 0.103 0.897 38 H 0.135 0.865 39 H 0.106 0.894 40 H 0.407 0.593 41 H -0.010 1.010 42 H 0.046 0.954 43 H 0.243 0.757 44 H 0.058 0.942 45 H 0.010 0.990 46 H 0.066 0.934 47 H 0.090 0.910 48 H 0.060 0.940 49 H 0.047 0.953 50 H 0.075 0.925 51 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.947 -11.046 4.519 20.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.120 4.120 3 C -0.088 4.088 4 C -0.146 4.146 5 C -0.145 4.145 6 C -0.156 4.156 7 C -0.070 4.070 8 C -0.136 4.136 9 C 0.296 3.704 10 O -0.469 6.469 11 N -0.341 5.341 12 C 0.032 3.968 13 H 0.076 0.924 14 C 0.045 3.955 15 N -0.322 5.322 16 C -0.380 4.380 17 H 0.089 0.911 18 C -0.246 4.246 19 N -0.581 5.581 20 Si 0.782 3.218 21 H -0.196 1.196 22 H -0.230 1.230 23 H -0.203 1.203 24 C 0.010 3.990 25 C -0.153 4.153 26 C -0.106 4.106 27 H 0.089 0.911 28 C -0.191 4.191 29 C -0.132 4.132 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.091 0.909 33 H 0.097 0.903 34 H 0.092 0.908 35 H 0.159 0.841 36 H 0.150 0.850 37 H 0.121 0.879 38 H 0.153 0.847 39 H 0.124 0.876 40 H 0.244 0.756 41 H 0.008 0.992 42 H 0.065 0.935 43 H 0.052 0.948 44 H 0.076 0.924 45 H 0.028 0.972 46 H 0.084 0.916 47 H 0.108 0.892 48 H 0.079 0.921 49 H 0.066 0.934 50 H 0.094 0.906 51 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -16.336 -11.504 3.934 20.364 hybrid contribution 0.572 1.252 -1.072 1.745 sum -15.764 -10.252 2.863 19.021 Atomic orbital electron populations 1.21714 0.93560 1.02509 1.02046 1.20574 0.97016 0.90948 1.03412 1.20182 0.98546 0.97310 0.92727 1.21263 1.00192 0.94545 0.98553 1.21300 0.99531 0.95783 0.97845 1.21140 1.00822 1.00169 0.93448 1.19467 0.98606 0.95084 0.93843 1.20705 0.93247 1.03062 0.96540 1.20970 0.90215 0.78748 0.80467 1.90676 1.59866 1.41867 1.54448 1.45704 1.12874 1.52030 1.23501 1.21382 0.82456 0.97500 0.95419 0.92416 1.20842 0.92566 0.84085 0.97960 1.44154 1.80969 1.06048 1.01061 1.19406 1.20647 1.03511 0.94485 0.91104 1.25728 0.96493 1.00738 1.01602 1.70180 1.22983 1.44640 1.20324 0.85545 0.78006 0.79371 0.78874 1.19573 1.23026 1.20306 1.21162 0.96498 0.97857 0.83510 1.21952 0.99359 0.93390 1.00645 1.21261 1.00807 0.96701 0.91875 0.91084 1.21747 0.99354 0.97171 1.00802 1.21031 0.99991 0.93485 0.98645 0.92785 0.92698 0.90921 0.90257 0.90774 0.84081 0.85049 0.87886 0.84687 0.87558 0.75604 0.99188 0.93522 0.94759 0.92381 0.97237 0.91577 0.89170 0.92075 0.93400 0.90649 0.84956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.99 9.90 71.98 0.71 -1.28 16 2 C -0.08 -1.45 6.06 29.85 0.18 -1.27 16 3 C -0.09 -2.14 5.13 -19.87 -0.10 -2.24 16 4 C -0.13 -3.19 9.70 22.27 0.22 -2.97 16 5 C -0.13 -3.64 10.05 22.27 0.22 -3.41 16 6 C -0.14 -4.55 9.70 22.27 0.22 -4.34 16 7 C -0.07 -2.14 4.37 -19.86 -0.09 -2.23 16 8 C -0.10 -2.69 5.83 29.10 0.17 -2.52 16 9 C 0.51 18.91 7.79 87.66 0.68 19.60 16 10 O -0.59 -27.82 15.70 -3.04 -0.05 -27.86 16 11 N -0.69 -23.50 4.25 -442.16 -1.88 -25.38 16 12 C 0.14 5.32 2.24 45.07 0.10 5.42 16 13 H 0.06 2.40 7.58 -2.39 -0.02 2.38 16 14 C 0.17 8.68 4.90 86.36 0.42 9.11 16 15 N -0.60 -29.16 2.91 -699.09 -2.04 -31.20 16 16 C -0.25 -13.54 9.58 84.03 0.81 -12.74 16 17 H 0.07 3.66 7.89 -2.91 -0.02 3.64 16 18 C -0.05 -2.89 4.92 84.86 0.42 -2.47 16 19 N -0.93 -58.44 11.19 21.65 0.24 -58.20 16 20 Si 0.95 46.35 29.59 68.60 2.03 48.38 16 21 H -0.27 -12.43 7.11 99.48 0.71 -11.73 16 22 H -0.30 -15.28 7.11 99.48 0.71 -14.57 16 23 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 24 C 0.13 5.16 6.52 86.37 0.56 5.72 16 25 C -0.11 -3.18 5.20 30.68 0.16 -3.02 16 26 C -0.09 -2.53 2.48 -10.77 -0.03 -2.56 16 27 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 28 C -0.13 -2.88 9.05 71.98 0.65 -2.23 16 29 C -0.11 -3.06 9.36 22.27 0.21 -2.85 16 30 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.08 1.25 8.09 -2.39 -0.02 1.23 16 34 H 0.07 1.26 8.09 -2.39 -0.02 1.24 16 35 H 0.14 2.71 8.06 -2.91 -0.02 2.69 16 36 H 0.13 3.26 8.06 -2.91 -0.02 3.24 16 37 H 0.10 3.62 8.06 -2.91 -0.02 3.60 16 38 H 0.14 2.62 8.09 -2.39 -0.02 2.60 16 39 H 0.11 2.88 8.08 -2.39 -0.02 2.86 16 40 H 0.41 11.55 6.64 -92.71 -0.62 10.93 16 41 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 42 H 0.05 2.82 6.07 -2.38 -0.01 2.81 16 43 H 0.24 15.10 8.31 -92.71 -0.77 14.33 16 44 H 0.06 2.15 7.93 -2.39 -0.02 2.13 16 45 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 46 H 0.07 1.72 6.40 -2.39 -0.02 1.71 16 47 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 48 H 0.06 1.22 7.54 -2.38 -0.02 1.20 16 49 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 50 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 51 H 0.13 3.00 8.06 -2.91 -0.02 2.98 16 Total: -1.00 -75.14 403.95 4.10 -71.04 By element: Atomic # 1 Polarization: 29.23 SS G_CDS: 0.28 Total: 29.51 kcal Atomic # 6 Polarization: -11.81 SS G_CDS: 5.51 Total: -6.29 kcal Atomic # 7 Polarization: -111.10 SS G_CDS: -3.67 Total: -114.78 kcal Atomic # 8 Polarization: -27.82 SS G_CDS: -0.05 Total: -27.86 kcal Atomic # 14 Polarization: 46.35 SS G_CDS: 2.03 Total: 48.38 kcal Total: -75.14 4.10 -71.04 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000967006431.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.143 kcal (2) G-P(sol) polarization free energy of solvation -75.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.038 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds