Wall clock time and date at job start Tue Mar 31 2020 16:39:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50702 * 109.47173 * 2 1 4 4 C 1.38252 * 120.00126 * 89.99882 * 3 2 1 5 5 C 1.38219 * 119.99732 * 179.97438 * 4 3 2 6 6 C 1.38247 * 120.00062 * 359.97438 * 5 4 3 7 7 C 1.38218 * 120.00414 * 0.28408 * 6 5 4 8 8 C 1.50696 * 120.00460 * 179.72042 * 7 6 5 9 9 C 1.50695 * 109.46975 * 89.99643 * 8 7 6 10 10 O 1.21280 * 120.00246 * 0.02562 * 9 8 7 11 11 N 1.34776 * 119.99682 * 180.02562 * 9 8 7 12 12 C 1.46508 * 120.00083 * 179.97438 * 11 9 8 13 13 H 1.09001 * 109.49540 * 34.99938 * 12 11 9 14 14 C 1.53187 * 109.49695 * 274.93619 * 12 11 9 15 15 N 1.46941 * 108.77220 * 185.44158 * 14 12 11 16 16 C 1.36930 * 120.60673 * 233.53645 * 15 14 12 17 17 H 1.08003 * 120.00350 * 27.69566 * 16 15 14 18 18 C 1.38809 * 119.99734 * 207.68879 * 16 15 14 19 19 N 1.31620 * 120.00480 * 17.35749 * 18 16 15 20 20 Si 1.86804 * 120.00140 * 197.35617 * 18 16 15 21 21 H 1.48496 * 109.47409 * 89.99871 * 20 18 16 22 22 H 1.48494 * 109.47188 * 210.00531 * 20 18 16 23 23 H 1.48505 * 109.46650 * 329.99949 * 20 18 16 24 24 C 1.46932 * 118.75802 * 53.55686 * 15 14 12 25 25 C 1.53192 * 108.77747 * 306.40951 * 24 15 14 26 26 C 1.53037 * 109.49762 * 155.06474 * 12 11 9 27 27 H 1.08999 * 109.46124 * 61.31516 * 26 12 11 28 28 C 1.52997 * 109.46172 * 301.33814 * 26 12 11 29 29 C 1.38211 * 119.99532 * 269.97778 * 3 2 1 30 30 H 1.09007 * 109.46856 * 300.00154 * 1 2 3 31 31 H 1.08995 * 109.47340 * 59.99836 * 1 2 3 32 32 H 1.08994 * 109.47212 * 180.02562 * 1 2 3 33 33 H 1.08996 * 109.47308 * 239.99855 * 2 1 3 34 34 H 1.09003 * 109.47442 * 119.99510 * 2 1 3 35 35 H 1.07997 * 120.00276 * 359.97438 * 4 3 2 36 36 H 1.07997 * 119.99759 * 179.97438 * 5 4 3 37 37 H 1.08002 * 120.00044 * 179.97438 * 6 5 4 38 38 H 1.09001 * 109.47016 * 209.99650 * 8 7 6 39 39 H 1.08996 * 109.46808 * 329.99760 * 8 7 6 40 40 H 0.97000 * 120.00400 * 0.02562 * 11 9 8 41 41 H 1.09000 * 109.59079 * 305.20052 * 14 12 11 42 42 H 1.08999 * 109.58759 * 65.62933 * 14 12 11 43 43 H 0.96996 * 120.00540 * 179.97438 * 19 18 16 44 44 H 1.08997 * 109.58066 * 186.62293 * 24 15 14 45 45 H 1.08997 * 109.58631 * 66.20425 * 24 15 14 46 46 H 1.08989 * 109.49942 * 294.68854 * 25 24 15 47 47 H 1.08996 * 109.49531 * 174.58532 * 25 24 15 48 48 H 1.09008 * 109.47212 * 60.00294 * 28 26 12 49 49 H 1.08998 * 109.47504 * 180.02562 * 28 26 12 50 50 H 1.09001 * 109.47452 * 300.00039 * 28 26 12 51 51 H 1.08001 * 120.00391 * 0.02562 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2628 2.0726 1.1973 5 6 2.7240 3.3756 1.1972 6 6 2.9555 4.0268 -0.0001 7 6 2.7200 3.3771 -1.1971 8 6 2.9663 4.0891 -2.5022 9 6 4.3877 3.8523 -2.9432 10 8 5.1278 3.1719 -2.2647 11 7 4.8365 4.3967 -4.0915 12 6 6.2186 4.1670 -4.5200 13 1 6.5252 3.1605 -4.2353 14 6 7.1389 5.1910 -3.8486 15 7 8.4966 5.0314 -4.3874 16 6 9.5631 4.8502 -3.5479 17 1 9.4180 4.3879 -2.5826 18 6 10.8306 5.2604 -3.9375 19 7 10.9703 6.1124 -4.9309 20 14 12.3384 4.6031 -3.0519 21 1 12.8048 3.3628 -3.7222 22 1 13.4179 5.6221 -3.0895 23 1 11.9909 4.3020 -1.6398 24 6 8.6884 5.0705 -5.8437 25 6 7.7507 4.0472 -6.4921 26 6 6.3142 4.3193 -6.0398 27 1 6.0309 5.3334 -6.3216 28 6 5.3702 3.3207 -6.7126 29 6 2.2631 2.0721 -1.1970 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0276 0.0005 33 1 1.8934 -0.5138 -0.8899 34 1 1.8934 -0.5138 0.8900 35 1 2.0824 1.5637 2.1326 36 1 2.9036 3.8848 2.1325 37 1 3.3155 5.0451 -0.0002 38 1 2.2823 3.7063 -3.2597 39 1 2.8003 5.1582 -2.3697 40 1 4.2448 4.9412 -4.6340 41 1 6.7792 6.1984 -4.0581 42 1 7.1504 5.0214 -2.7719 43 1 11.8560 6.3994 -5.2029 44 1 9.7223 4.8217 -6.0828 45 1 8.4548 6.0678 -6.2163 46 1 8.0434 3.0421 -6.1888 47 1 7.8129 4.1330 -7.5769 48 1 4.3468 3.5151 -6.3915 49 1 5.4385 3.4288 -7.7950 50 1 5.6531 2.3066 -6.4305 51 1 2.0831 1.5630 -2.1323 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000967006433.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:39:39 Heat of formation + Delta-G solvation = -13.705332 kcal Electronic energy + Delta-G solvation = -28430.636467 eV Core-core repulsion = 24715.303482 eV Total energy + Delta-G solvation = -3715.332985 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.10612 -39.14937 -37.56714 -34.60029 -34.37317 -32.99197 -32.42431 -31.07308 -29.69860 -29.15038 -27.72642 -26.84843 -24.09946 -24.04290 -22.65651 -21.92648 -21.06940 -20.64720 -19.94193 -19.21123 -16.84869 -16.79334 -16.52630 -15.90130 -15.68769 -15.02925 -14.82405 -14.59295 -13.98712 -13.88067 -13.80307 -13.69115 -13.42362 -13.40160 -13.18585 -13.15847 -12.92859 -12.45099 -12.20129 -12.08273 -11.95276 -11.84673 -11.62509 -11.48916 -11.39881 -11.01364 -10.96210 -10.86621 -10.79049 -10.62977 -10.24528 -10.12951 -9.89914 -9.81458 -9.61026 -9.44417 -8.79651 -8.74958 -8.61723 -8.36522 -6.64890 -5.75778 -3.17654 1.30776 1.38639 2.91455 3.38414 3.42225 3.48559 3.51601 3.83516 4.53004 4.55012 4.59809 4.76411 4.95172 5.04429 5.05604 5.13564 5.16303 5.20418 5.30429 5.31871 5.36481 5.40404 5.46073 5.49701 5.53421 5.63235 5.68482 5.71275 5.91074 5.91894 5.98288 6.03080 6.06559 6.09466 6.19844 6.25138 6.30319 6.43654 6.53147 6.58150 6.58753 6.65206 6.72699 6.76052 6.86290 6.98647 7.04852 7.37778 7.66719 7.81401 7.86082 8.47032 8.55318 9.25055 9.87372 10.42917 11.32894 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.013850 B = 0.002787 C = 0.002509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2021.172450 B =10043.540873 C =11157.491004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.085 4.085 3 C -0.084 4.084 4 C -0.121 4.121 5 C -0.116 4.116 6 C -0.108 4.108 7 C -0.058 4.058 8 C -0.104 4.104 9 C 0.509 3.491 10 O -0.527 6.527 11 N -0.723 5.723 12 C 0.133 3.867 13 H 0.085 0.915 14 C 0.143 3.857 15 N -0.588 5.588 16 C -0.249 4.249 17 H 0.066 0.934 18 C 0.002 3.998 19 N -0.904 5.904 20 Si 0.902 3.098 21 H -0.287 1.287 22 H -0.291 1.291 23 H -0.278 1.278 24 C 0.167 3.833 25 C -0.134 4.134 26 C -0.091 4.091 27 H 0.066 0.934 28 C -0.143 4.143 29 C -0.103 4.103 30 H 0.054 0.946 31 H 0.055 0.945 32 H 0.056 0.944 33 H 0.071 0.929 34 H 0.070 0.930 35 H 0.118 0.882 36 H 0.120 0.880 37 H 0.120 0.880 38 H 0.098 0.902 39 H 0.101 0.899 40 H 0.393 0.607 41 H 0.016 0.984 42 H 0.057 0.943 43 H 0.253 0.747 44 H 0.089 0.911 45 H 0.018 0.982 46 H 0.057 0.943 47 H 0.054 0.946 48 H 0.047 0.953 49 H 0.051 0.949 50 H 0.051 0.949 51 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.675 -6.333 3.427 23.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.123 4.123 3 C -0.084 4.084 4 C -0.139 4.139 5 C -0.134 4.134 6 C -0.126 4.126 7 C -0.059 4.059 8 C -0.144 4.144 9 C 0.295 3.705 10 O -0.402 6.402 11 N -0.374 5.374 12 C 0.028 3.972 13 H 0.103 0.897 14 C 0.015 3.985 15 N -0.310 5.310 16 C -0.378 4.378 17 H 0.084 0.916 18 C -0.197 4.197 19 N -0.549 5.549 20 Si 0.732 3.268 21 H -0.214 1.214 22 H -0.218 1.218 23 H -0.204 1.204 24 C 0.041 3.959 25 C -0.174 4.174 26 C -0.110 4.110 27 H 0.085 0.915 28 C -0.201 4.201 29 C -0.121 4.121 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.136 0.864 36 H 0.138 0.862 37 H 0.138 0.862 38 H 0.117 0.883 39 H 0.119 0.881 40 H 0.227 0.773 41 H 0.034 0.966 42 H 0.075 0.925 43 H 0.063 0.937 44 H 0.107 0.893 45 H 0.036 0.964 46 H 0.075 0.925 47 H 0.072 0.928 48 H 0.066 0.934 49 H 0.070 0.930 50 H 0.070 0.930 51 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -21.950 -6.759 3.878 23.292 hybrid contribution 0.608 0.100 0.084 0.622 sum -21.342 -6.659 3.962 22.705 Atomic orbital electron populations 1.21742 0.94852 1.01539 1.02119 1.20533 0.95990 0.92839 1.02890 1.19802 0.99414 0.96040 0.93132 1.20966 1.00585 0.95008 0.97321 1.21064 0.99508 0.94986 0.97878 1.20979 0.99460 1.00184 0.92006 1.19258 0.98587 0.94321 0.93691 1.20703 0.95228 1.02381 0.96078 1.20404 0.89067 0.79948 0.81130 1.90762 1.57830 1.38312 1.53308 1.46136 1.14309 1.53113 1.23849 1.21728 0.79831 1.01865 0.93769 0.89735 1.21186 0.86047 0.94169 0.97122 1.44001 1.01255 1.84072 1.01708 1.19235 0.86269 1.32341 0.99978 0.91584 1.25012 0.98404 0.97277 0.98967 1.70037 1.21949 1.32055 1.30881 0.86276 0.82770 0.78224 0.79496 1.21420 1.21792 1.20367 1.20847 0.98760 0.93716 0.82532 1.22248 0.94172 1.01873 0.99059 1.21299 0.96850 0.99018 0.93816 0.91539 1.21846 0.98704 0.99608 0.99907 1.20804 0.99867 0.93900 0.97498 0.92641 0.92590 0.92530 0.91055 0.91112 0.86443 0.86161 0.86230 0.88333 0.88106 0.77330 0.96612 0.92457 0.93692 0.89255 0.96352 0.92467 0.92767 0.93412 0.93031 0.93003 0.86491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 9.89 37.16 0.37 -0.67 16 2 C -0.09 -0.74 6.06 -27.88 -0.17 -0.91 16 3 C -0.08 -0.93 5.13 -104.63 -0.54 -1.47 16 4 C -0.12 -1.31 9.70 -39.58 -0.38 -1.70 16 5 C -0.12 -1.31 10.05 -39.58 -0.40 -1.71 16 6 C -0.11 -1.32 9.70 -39.59 -0.38 -1.71 16 7 C -0.06 -0.71 4.37 -104.62 -0.46 -1.17 16 8 C -0.10 -1.09 5.83 -29.04 -0.17 -1.26 16 9 C 0.51 7.59 7.79 -10.99 -0.09 7.50 16 10 O -0.53 -10.54 15.70 5.56 0.09 -10.45 16 11 N -0.72 -10.04 4.37 -53.69 -0.23 -10.28 16 12 C 0.13 2.38 2.06 -67.81 -0.14 2.24 16 13 H 0.08 1.77 7.58 -51.93 -0.39 1.38 16 14 C 0.14 3.13 6.09 -3.71 -0.02 3.11 16 15 N -0.59 -15.08 3.00 -172.31 -0.52 -15.60 16 16 C -0.25 -7.09 9.58 -15.06 -0.14 -7.23 16 17 H 0.07 1.91 7.89 -52.48 -0.41 1.50 16 18 C 0.00 0.05 4.91 -17.43 -0.09 -0.04 16 19 N -0.90 -26.51 11.19 55.49 0.62 -25.89 16 20 Si 0.90 22.37 29.59 -169.99 -5.03 17.34 16 21 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 22 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 23 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 24 C 0.17 3.97 5.31 -3.71 -0.02 3.95 16 25 C -0.13 -2.50 5.36 -26.61 -0.14 -2.64 16 26 C -0.09 -1.44 2.27 -90.58 -0.21 -1.65 16 27 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 28 C -0.14 -1.84 9.02 37.16 0.34 -1.51 16 29 C -0.10 -1.21 9.36 -39.58 -0.37 -1.59 16 30 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 33 H 0.07 0.61 8.08 -51.93 -0.42 0.19 16 34 H 0.07 0.57 8.09 -51.93 -0.42 0.15 16 35 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 36 H 0.12 1.11 8.06 -52.49 -0.42 0.68 16 37 H 0.12 1.33 8.06 -52.49 -0.42 0.90 16 38 H 0.10 0.78 8.09 -51.93 -0.42 0.36 16 39 H 0.10 0.84 8.09 -51.93 -0.42 0.42 16 40 H 0.39 4.12 8.31 -40.82 -0.34 3.78 16 41 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 42 H 0.06 1.37 7.93 -51.93 -0.41 0.96 16 43 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 44 H 0.09 2.38 6.04 -51.93 -0.31 2.07 16 45 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 46 H 0.06 1.12 8.14 -51.94 -0.42 0.70 16 47 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 48 H 0.05 0.53 7.36 -51.92 -0.38 0.14 16 49 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 50 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 51 H 0.12 1.23 8.06 -52.49 -0.42 0.81 16 LS Contribution 407.07 15.07 6.13 6.13 Total: -1.00 -33.35 407.07 -10.94 -44.29 By element: Atomic # 1 Polarization: 11.88 SS G_CDS: -8.99 Total: 2.90 kcal Atomic # 6 Polarization: -5.43 SS G_CDS: -3.01 Total: -8.44 kcal Atomic # 7 Polarization: -51.64 SS G_CDS: -0.13 Total: -51.77 kcal Atomic # 8 Polarization: -10.54 SS G_CDS: 0.09 Total: -10.45 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.03 Total: 17.34 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -33.35 -10.94 -44.29 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000967006433.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.582 kcal (2) G-P(sol) polarization free energy of solvation -33.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds