Wall clock time and date at job start Tue Mar 31 2020 16:39:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50702 * 109.47173 * 2 1 4 4 C 1.38252 * 120.00126 * 89.99882 * 3 2 1 5 5 C 1.38219 * 119.99732 * 179.97438 * 4 3 2 6 6 C 1.38247 * 120.00062 * 359.97438 * 5 4 3 7 7 C 1.38218 * 120.00414 * 0.28408 * 6 5 4 8 8 C 1.50696 * 120.00460 * 179.72042 * 7 6 5 9 9 C 1.50695 * 109.46975 * 89.99643 * 8 7 6 10 10 O 1.21280 * 120.00246 * 0.02562 * 9 8 7 11 11 N 1.34776 * 119.99682 * 180.02562 * 9 8 7 12 12 C 1.46508 * 120.00083 * 179.97438 * 11 9 8 13 13 H 1.09001 * 109.49540 * 34.99938 * 12 11 9 14 14 C 1.53187 * 109.49695 * 274.93619 * 12 11 9 15 15 N 1.46941 * 108.77220 * 185.44158 * 14 12 11 16 16 C 1.36930 * 120.60673 * 233.53645 * 15 14 12 17 17 H 1.08003 * 120.00350 * 27.69566 * 16 15 14 18 18 C 1.38809 * 119.99734 * 207.68879 * 16 15 14 19 19 N 1.31620 * 120.00480 * 17.35749 * 18 16 15 20 20 Si 1.86804 * 120.00140 * 197.35617 * 18 16 15 21 21 H 1.48496 * 109.47409 * 89.99871 * 20 18 16 22 22 H 1.48494 * 109.47188 * 210.00531 * 20 18 16 23 23 H 1.48505 * 109.46650 * 329.99949 * 20 18 16 24 24 C 1.46932 * 118.75802 * 53.55686 * 15 14 12 25 25 C 1.53192 * 108.77747 * 306.40951 * 24 15 14 26 26 C 1.53037 * 109.49762 * 155.06474 * 12 11 9 27 27 H 1.08999 * 109.46124 * 61.31516 * 26 12 11 28 28 C 1.52997 * 109.46172 * 301.33814 * 26 12 11 29 29 C 1.38211 * 119.99532 * 269.97778 * 3 2 1 30 30 H 1.09007 * 109.46856 * 300.00154 * 1 2 3 31 31 H 1.08995 * 109.47340 * 59.99836 * 1 2 3 32 32 H 1.08994 * 109.47212 * 180.02562 * 1 2 3 33 33 H 1.08996 * 109.47308 * 239.99855 * 2 1 3 34 34 H 1.09003 * 109.47442 * 119.99510 * 2 1 3 35 35 H 1.07997 * 120.00276 * 359.97438 * 4 3 2 36 36 H 1.07997 * 119.99759 * 179.97438 * 5 4 3 37 37 H 1.08002 * 120.00044 * 179.97438 * 6 5 4 38 38 H 1.09001 * 109.47016 * 209.99650 * 8 7 6 39 39 H 1.08996 * 109.46808 * 329.99760 * 8 7 6 40 40 H 0.97000 * 120.00400 * 0.02562 * 11 9 8 41 41 H 1.09000 * 109.59079 * 305.20052 * 14 12 11 42 42 H 1.08999 * 109.58759 * 65.62933 * 14 12 11 43 43 H 0.96996 * 120.00540 * 179.97438 * 19 18 16 44 44 H 1.08997 * 109.58066 * 186.62293 * 24 15 14 45 45 H 1.08997 * 109.58631 * 66.20425 * 24 15 14 46 46 H 1.08989 * 109.49942 * 294.68854 * 25 24 15 47 47 H 1.08996 * 109.49531 * 174.58532 * 25 24 15 48 48 H 1.09008 * 109.47212 * 60.00294 * 28 26 12 49 49 H 1.08998 * 109.47504 * 180.02562 * 28 26 12 50 50 H 1.09001 * 109.47452 * 300.00039 * 28 26 12 51 51 H 1.08001 * 120.00391 * 0.02562 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2628 2.0726 1.1973 5 6 2.7240 3.3756 1.1972 6 6 2.9555 4.0268 -0.0001 7 6 2.7200 3.3771 -1.1971 8 6 2.9663 4.0891 -2.5022 9 6 4.3877 3.8523 -2.9432 10 8 5.1278 3.1719 -2.2647 11 7 4.8365 4.3967 -4.0915 12 6 6.2186 4.1670 -4.5200 13 1 6.5252 3.1605 -4.2353 14 6 7.1389 5.1910 -3.8486 15 7 8.4966 5.0314 -4.3874 16 6 9.5631 4.8502 -3.5479 17 1 9.4180 4.3879 -2.5826 18 6 10.8306 5.2604 -3.9375 19 7 10.9703 6.1124 -4.9309 20 14 12.3384 4.6031 -3.0519 21 1 12.8048 3.3628 -3.7222 22 1 13.4179 5.6221 -3.0895 23 1 11.9909 4.3020 -1.6398 24 6 8.6884 5.0705 -5.8437 25 6 7.7507 4.0472 -6.4921 26 6 6.3142 4.3193 -6.0398 27 1 6.0309 5.3334 -6.3216 28 6 5.3702 3.3207 -6.7126 29 6 2.2631 2.0721 -1.1970 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0276 0.0005 33 1 1.8934 -0.5138 -0.8899 34 1 1.8934 -0.5138 0.8900 35 1 2.0824 1.5637 2.1326 36 1 2.9036 3.8848 2.1325 37 1 3.3155 5.0451 -0.0002 38 1 2.2823 3.7063 -3.2597 39 1 2.8003 5.1582 -2.3697 40 1 4.2448 4.9412 -4.6340 41 1 6.7792 6.1984 -4.0581 42 1 7.1504 5.0214 -2.7719 43 1 11.8560 6.3994 -5.2029 44 1 9.7223 4.8217 -6.0828 45 1 8.4548 6.0678 -6.2163 46 1 8.0434 3.0421 -6.1888 47 1 7.8129 4.1330 -7.5769 48 1 4.3468 3.5151 -6.3915 49 1 5.4385 3.4288 -7.7950 50 1 5.6531 2.3066 -6.4305 51 1 2.0831 1.5630 -2.1323 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000967006433.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:39:38 Heat of formation + Delta-G solvation = -32.319739 kcal Electronic energy + Delta-G solvation = -28431.443648 eV Core-core repulsion = 24715.303482 eV Total energy + Delta-G solvation = -3716.140166 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.24703 -40.21476 -39.04567 -36.17556 -35.29869 -34.45285 -33.32304 -33.03353 -30.81030 -30.29463 -29.11506 -28.14721 -25.87814 -24.78771 -24.07739 -22.94548 -22.68028 -21.72073 -21.24424 -20.56080 -18.75069 -17.97979 -17.49074 -17.12815 -16.74738 -16.67224 -15.93822 -15.86495 -15.56323 -15.29326 -15.06641 -14.92647 -14.62775 -14.54923 -14.36790 -14.19351 -13.97975 -13.76058 -13.56331 -13.21353 -13.15134 -12.97400 -12.83493 -12.77566 -12.62693 -12.57975 -12.30162 -12.13217 -12.02846 -11.97017 -11.68833 -11.66425 -11.62031 -11.41885 -11.25077 -10.82681 -10.61276 -10.04894 -9.66279 -9.47780 -8.71362 -7.92794 -5.38126 0.43983 0.52771 1.41871 1.43159 1.52658 1.74370 2.23803 2.49083 2.92329 3.20684 3.68835 3.70412 3.77263 3.84446 4.00010 4.01893 4.09823 4.16185 4.24703 4.31051 4.40253 4.46058 4.51305 4.55506 4.59533 4.63155 4.67191 4.70998 4.75430 4.80769 4.92919 4.96220 5.02659 5.03523 5.09972 5.11053 5.19283 5.21833 5.24174 5.26333 5.39616 5.45740 5.46869 5.58744 5.60669 5.61059 5.68597 5.74194 5.76151 6.16196 6.34445 6.69252 7.10613 7.40783 7.80562 8.30099 9.12646 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.013850 B = 0.002787 C = 0.002509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2021.172450 B =10043.540873 C =11157.491004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.085 4.085 3 C -0.093 4.093 4 C -0.131 4.131 5 C -0.128 4.128 6 C -0.131 4.131 7 C -0.075 4.075 8 C -0.092 4.092 9 C 0.508 3.492 10 O -0.584 6.584 11 N -0.707 5.707 12 C 0.152 3.848 13 H 0.050 0.950 14 C 0.145 3.855 15 N -0.607 5.607 16 C -0.267 4.267 17 H 0.050 0.950 18 C -0.043 4.043 19 N -0.928 5.928 20 Si 0.964 3.036 21 H -0.282 1.282 22 H -0.287 1.287 23 H -0.276 1.276 24 C 0.172 3.828 25 C -0.124 4.124 26 C -0.082 4.082 27 H 0.081 0.919 28 C -0.134 4.134 29 C -0.118 4.118 30 H 0.055 0.945 31 H 0.054 0.946 32 H 0.069 0.931 33 H 0.070 0.930 34 H 0.076 0.924 35 H 0.136 0.864 36 H 0.136 0.864 37 H 0.123 0.877 38 H 0.134 0.866 39 H 0.127 0.873 40 H 0.416 0.584 41 H 0.021 0.979 42 H 0.026 0.974 43 H 0.253 0.747 44 H 0.054 0.946 45 H 0.006 0.994 46 H 0.043 0.957 47 H 0.083 0.917 48 H 0.073 0.927 49 H 0.071 0.929 50 H 0.040 0.960 51 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.111 -6.850 2.531 26.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.122 4.122 3 C -0.093 4.093 4 C -0.149 4.149 5 C -0.146 4.146 6 C -0.149 4.149 7 C -0.075 4.075 8 C -0.131 4.131 9 C 0.296 3.704 10 O -0.463 6.463 11 N -0.360 5.360 12 C 0.045 3.955 13 H 0.069 0.931 14 C 0.018 3.982 15 N -0.331 5.331 16 C -0.398 4.398 17 H 0.068 0.932 18 C -0.239 4.239 19 N -0.574 5.574 20 Si 0.792 3.208 21 H -0.208 1.208 22 H -0.213 1.213 23 H -0.202 1.202 24 C 0.047 3.953 25 C -0.163 4.163 26 C -0.101 4.101 27 H 0.100 0.900 28 C -0.191 4.191 29 C -0.136 4.136 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.088 0.912 33 H 0.089 0.911 34 H 0.095 0.905 35 H 0.154 0.846 36 H 0.154 0.846 37 H 0.141 0.859 38 H 0.152 0.848 39 H 0.145 0.855 40 H 0.253 0.747 41 H 0.039 0.961 42 H 0.044 0.956 43 H 0.062 0.938 44 H 0.072 0.928 45 H 0.024 0.976 46 H 0.062 0.938 47 H 0.101 0.899 48 H 0.091 0.909 49 H 0.090 0.910 50 H 0.059 0.941 51 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -24.449 -7.257 2.952 25.673 hybrid contribution 1.363 0.285 0.434 1.458 sum -23.086 -6.972 3.387 24.352 Atomic orbital electron populations 1.21706 0.93544 1.02428 1.02094 1.20580 0.97072 0.91429 1.03153 1.20156 0.98907 0.97147 0.93066 1.21268 1.00317 0.95041 0.98227 1.21360 0.99335 0.95462 0.98415 1.21224 1.00206 1.00764 0.92675 1.19519 0.98788 0.94798 0.94395 1.20732 0.92209 1.04066 0.96134 1.21234 0.90468 0.78476 0.80259 1.90747 1.59768 1.40853 1.54929 1.45892 1.12817 1.53186 1.24074 1.21163 0.81079 0.98272 0.94990 0.93124 1.21225 0.85556 0.95706 0.95707 1.44224 1.01980 1.84537 1.02370 1.19367 0.87855 1.32449 1.00090 0.93224 1.25702 1.00706 0.97542 0.99981 1.70159 1.22347 1.32861 1.31993 0.85320 0.79374 0.77657 0.78437 1.20848 1.21298 1.20151 1.20720 0.98218 0.94503 0.81895 1.22087 0.94844 0.99130 1.00273 1.21226 0.95793 1.01048 0.92072 0.90027 1.21765 0.98897 0.97657 1.00807 1.21064 1.00208 0.94062 0.98309 0.92579 0.92696 0.91177 0.91123 0.90529 0.84610 0.84648 0.85874 0.84818 0.85488 0.74665 0.96101 0.95551 0.93809 0.92760 0.97623 0.93825 0.89891 0.90851 0.90981 0.94085 0.85498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.76 9.89 71.98 0.71 -1.05 16 2 C -0.09 -1.37 6.06 29.85 0.18 -1.19 16 3 C -0.09 -1.97 5.13 -19.87 -0.10 -2.08 16 4 C -0.13 -2.74 9.70 22.27 0.22 -2.53 16 5 C -0.13 -2.84 10.05 22.27 0.22 -2.62 16 6 C -0.13 -3.15 9.70 22.27 0.22 -2.93 16 7 C -0.07 -1.75 4.37 -19.86 -0.09 -1.83 16 8 C -0.09 -1.71 5.83 29.10 0.17 -1.54 16 9 C 0.51 14.59 7.79 87.66 0.68 15.28 16 10 O -0.58 -23.86 15.70 -3.03 -0.05 -23.91 16 11 N -0.71 -18.35 4.37 -442.17 -1.93 -20.28 16 12 C 0.15 5.37 2.06 45.06 0.09 5.47 16 13 H 0.05 2.18 7.58 -2.39 -0.02 2.16 16 14 C 0.15 6.56 6.09 86.36 0.53 7.09 16 15 N -0.61 -32.33 3.00 -699.07 -2.09 -34.42 16 16 C -0.27 -15.89 9.58 84.03 0.81 -15.08 16 17 H 0.05 3.04 7.89 -2.91 -0.02 3.02 16 18 C -0.04 -2.53 4.91 84.86 0.42 -2.11 16 19 N -0.93 -55.83 11.19 21.65 0.24 -55.58 16 20 Si 0.96 47.12 29.59 68.60 2.03 49.15 16 21 H -0.28 -13.46 7.11 99.48 0.71 -12.75 16 22 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 23 H -0.28 -13.29 7.11 99.48 0.71 -12.58 16 24 C 0.17 8.35 5.31 86.36 0.46 8.81 16 25 C -0.12 -4.53 5.36 30.67 0.16 -4.37 16 26 C -0.08 -2.45 2.27 -10.77 -0.02 -2.47 16 27 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 28 C -0.13 -2.95 9.02 71.98 0.65 -2.30 16 29 C -0.12 -2.69 9.36 22.27 0.21 -2.48 16 30 H 0.06 0.69 8.14 -2.38 -0.02 0.67 16 31 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 33 H 0.07 1.13 8.08 -2.39 -0.02 1.11 16 34 H 0.08 1.12 8.09 -2.39 -0.02 1.10 16 35 H 0.14 2.22 8.06 -2.91 -0.02 2.19 16 36 H 0.14 2.43 8.06 -2.91 -0.02 2.40 16 37 H 0.12 2.72 8.06 -2.91 -0.02 2.70 16 38 H 0.13 1.56 8.09 -2.39 -0.02 1.54 16 39 H 0.13 1.71 8.09 -2.39 -0.02 1.69 16 40 H 0.42 7.19 8.31 -92.71 -0.77 6.42 16 41 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 42 H 0.03 1.32 7.93 -2.39 -0.02 1.30 16 43 H 0.25 14.59 8.31 -92.71 -0.77 13.82 16 44 H 0.05 3.00 6.04 -2.39 -0.01 2.98 16 45 H 0.01 0.29 8.14 -2.39 -0.02 0.27 16 46 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 47 H 0.08 2.56 8.14 -2.39 -0.02 2.54 16 48 H 0.07 1.26 7.36 -2.38 -0.02 1.25 16 49 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 50 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 51 H 0.13 2.49 8.06 -2.91 -0.02 2.47 16 Total: -1.00 -77.05 407.07 3.83 -73.22 By element: Atomic # 1 Polarization: 19.65 SS G_CDS: 0.12 Total: 19.77 kcal Atomic # 6 Polarization: -13.45 SS G_CDS: 5.51 Total: -7.94 kcal Atomic # 7 Polarization: -106.50 SS G_CDS: -3.78 Total: -110.29 kcal Atomic # 8 Polarization: -23.86 SS G_CDS: -0.05 Total: -23.91 kcal Atomic # 14 Polarization: 47.12 SS G_CDS: 2.03 Total: 49.15 kcal Total: -77.05 3.83 -73.22 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000967006433.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.898 kcal (2) G-P(sol) polarization free energy of solvation -77.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds