Wall clock time and date at job start Tue Mar 31 2020 16:39:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50700 * 109.46885 * 2 1 4 4 C 1.38262 * 120.00176 * 90.00484 * 3 2 1 5 5 C 1.38209 * 120.00241 * 180.02562 * 4 3 2 6 6 C 1.38261 * 120.00154 * 359.95196 * 5 4 3 7 7 C 1.38217 * 119.99651 * 0.02562 * 6 5 4 8 8 C 1.50699 * 119.99524 * 179.97438 * 7 6 5 9 9 C 1.50698 * 109.47088 * 90.00225 * 8 7 6 10 10 O 1.21277 * 120.00000 * 359.97438 * 9 8 7 11 11 N 1.34782 * 120.00003 * 179.97438 * 9 8 7 12 12 C 1.46504 * 119.99820 * 179.97438 * 11 9 8 13 13 H 1.09005 * 109.49488 * 35.06719 * 12 11 9 14 14 C 1.53187 * 109.49740 * 275.00235 * 12 11 9 15 15 N 1.46931 * 108.77635 * 294.65233 * 14 12 11 16 16 C 1.36933 * 120.63110 * 126.11477 * 15 14 12 17 17 H 1.08001 * 120.00321 * 331.87534 * 16 15 14 18 18 C 1.38815 * 119.99826 * 151.87200 * 16 15 14 19 19 N 1.31621 * 119.99984 * 343.17890 * 18 16 15 20 20 Si 1.86800 * 120.00122 * 163.17569 * 18 16 15 21 21 H 1.48504 * 109.47115 * 90.00059 * 20 18 16 22 22 H 1.48500 * 109.47480 * 210.00260 * 20 18 16 23 23 H 1.48499 * 109.47007 * 330.00291 * 20 18 16 24 24 C 1.46930 * 118.73454 * 306.39350 * 15 14 12 25 25 C 1.53192 * 108.77663 * 53.61038 * 24 15 14 26 26 C 1.53041 * 109.52270 * 155.14606 * 12 11 9 27 27 H 1.09000 * 109.46026 * 178.61961 * 26 12 11 28 28 C 1.53000 * 109.46231 * 298.59732 * 26 12 11 29 29 C 1.38216 * 120.00382 * 270.23464 * 3 2 1 30 30 H 1.08992 * 109.47591 * 59.99890 * 1 2 3 31 31 H 1.08997 * 109.46659 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.46826 * 299.99819 * 1 2 3 33 33 H 1.09005 * 109.47247 * 240.00903 * 2 1 3 34 34 H 1.08992 * 109.47591 * 120.00110 * 2 1 3 35 35 H 1.08001 * 119.99372 * 359.97438 * 4 3 2 36 36 H 1.08000 * 120.00043 * 179.97438 * 5 4 3 37 37 H 1.08001 * 120.00186 * 179.97438 * 6 5 4 38 38 H 1.09000 * 109.47579 * 330.00274 * 8 7 6 39 39 H 1.09001 * 109.47234 * 209.99944 * 8 7 6 40 40 H 0.96998 * 120.00291 * 0.02562 * 11 9 8 41 41 H 1.08998 * 109.59142 * 174.86828 * 14 12 11 42 42 H 1.09003 * 109.70978 * 54.50903 * 14 12 11 43 43 H 0.97002 * 120.00123 * 180.02562 * 19 18 16 44 44 H 1.09003 * 109.58347 * 173.39527 * 24 15 14 45 45 H 1.08998 * 109.58237 * 293.81591 * 24 15 14 46 46 H 1.08999 * 109.49421 * 185.41581 * 25 24 15 47 47 H 1.08991 * 109.52479 * 65.32939 * 25 24 15 48 48 H 1.09003 * 109.47023 * 59.99608 * 28 26 12 49 49 H 1.08994 * 109.47233 * 180.02562 * 28 26 12 50 50 H 1.09004 * 109.46862 * 300.00356 * 28 26 12 51 51 H 1.08006 * 120.00152 * 0.02562 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2628 2.0726 1.1974 5 6 2.7229 3.3759 1.1974 6 6 2.9537 4.0276 0.0000 7 6 2.7237 3.3758 -1.1969 8 6 2.9747 4.0864 -2.5020 9 6 4.3981 3.8502 -2.9369 10 8 5.1361 3.1720 -2.2541 11 7 4.8509 4.3925 -4.0847 12 6 6.2348 4.1633 -4.5072 13 1 6.5409 3.1573 -4.2201 14 6 7.1517 5.1888 -3.8331 15 7 6.8097 6.5282 -4.3308 16 6 6.5100 7.5409 -3.4591 17 1 6.0823 7.3137 -2.4938 18 6 6.7559 8.8596 -3.8163 19 7 7.5626 9.1299 -4.8205 20 14 5.9419 10.2504 -2.8717 21 1 6.8125 10.6554 -1.7388 22 1 5.7360 11.4096 -3.7768 23 1 4.6299 9.7920 -2.3483 24 6 6.7893 6.7588 -5.7817 25 6 5.8764 5.7157 -6.4340 26 6 6.3373 4.3143 -6.0267 27 1 7.3719 4.1678 -6.3372 28 6 5.4489 3.2690 -6.7040 29 6 2.2580 2.0741 -1.1969 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3632 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8934 -0.5137 -0.8901 34 1 1.8934 -0.5138 0.8899 35 1 2.0824 1.5635 2.1326 36 1 2.9026 3.8851 2.1327 37 1 3.3128 5.0461 0.0000 38 1 2.8073 5.1555 -2.3717 39 1 2.2941 3.7020 -3.2617 40 1 4.2607 4.9352 -4.6306 41 1 8.1907 4.9639 -4.0738 42 1 7.0110 5.1535 -2.7527 43 1 7.7347 10.0514 -5.0699 44 1 6.4071 7.7586 -5.9875 45 1 7.7988 6.6619 -6.1812 46 1 5.9276 5.8147 -7.5182 47 1 4.8499 5.8718 -6.1024 48 1 4.4143 3.4151 -6.3932 49 1 5.5221 3.3761 -7.7862 50 1 5.7775 2.2707 -6.4149 51 1 2.0740 1.5665 -2.1323 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000967006434.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:39:41 Heat of formation + Delta-G solvation = -28.451287 kcal Electronic energy + Delta-G solvation = -28986.486296 eV Core-core repulsion = 25270.513878 eV Total energy + Delta-G solvation = -3715.972417 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.27214 -40.26173 -38.95517 -35.97815 -35.28508 -34.11701 -33.29457 -32.96772 -30.99278 -30.32328 -29.06641 -28.18842 -25.80363 -24.77448 -23.96315 -23.07005 -22.75081 -22.01458 -20.87376 -20.23354 -18.66030 -18.06356 -17.41488 -16.94934 -16.76112 -16.55232 -15.94031 -15.81108 -15.65615 -15.28229 -14.91716 -14.80772 -14.68515 -14.56110 -14.37729 -14.15858 -13.95628 -13.75007 -13.48072 -13.23752 -12.99109 -12.98375 -12.85610 -12.71642 -12.60243 -12.57462 -12.39101 -12.19615 -12.11099 -11.90275 -11.68075 -11.62703 -11.61396 -11.27573 -11.07976 -10.81353 -10.55394 -9.92004 -9.66124 -9.47645 -8.62241 -7.87199 -5.32084 0.44707 0.52570 1.44331 1.46085 1.55142 1.79011 2.39050 2.50324 2.94369 3.27046 3.67326 3.71311 3.82541 3.85341 4.01117 4.03133 4.11903 4.14163 4.24855 4.32235 4.39285 4.49830 4.54012 4.59728 4.61992 4.64194 4.71378 4.77777 4.79749 4.80742 4.83595 5.01376 5.02177 5.05200 5.09065 5.11376 5.20706 5.24003 5.25773 5.28494 5.41429 5.47449 5.52909 5.58968 5.64749 5.70114 5.71369 5.74375 5.79644 6.16096 6.38933 6.74135 7.15960 7.42174 7.85907 8.37991 9.18145 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.012745 B = 0.003390 C = 0.002837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2196.345096 B = 8258.803887 C = 9866.248816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.083 4.083 3 C -0.089 4.089 4 C -0.129 4.129 5 C -0.125 4.125 6 C -0.134 4.134 7 C -0.069 4.069 8 C -0.098 4.098 9 C 0.513 3.487 10 O -0.584 6.584 11 N -0.695 5.695 12 C 0.148 3.852 13 H 0.075 0.925 14 C 0.136 3.864 15 N -0.597 5.597 16 C -0.252 4.252 17 H 0.052 0.948 18 C -0.046 4.046 19 N -0.932 5.932 20 Si 0.961 3.039 21 H -0.292 1.292 22 H -0.289 1.289 23 H -0.269 1.269 24 C 0.173 3.827 25 C -0.122 4.122 26 C -0.086 4.086 27 H 0.073 0.927 28 C -0.134 4.134 29 C -0.116 4.116 30 H 0.052 0.948 31 H 0.071 0.929 32 H 0.054 0.946 33 H 0.073 0.927 34 H 0.079 0.921 35 H 0.140 0.860 36 H 0.135 0.865 37 H 0.112 0.888 38 H 0.108 0.892 39 H 0.130 0.870 40 H 0.406 0.594 41 H 0.015 0.985 42 H 0.031 0.969 43 H 0.250 0.750 44 H 0.056 0.944 45 H -0.007 1.007 46 H 0.076 0.924 47 H 0.061 0.939 48 H 0.059 0.941 49 H 0.069 0.931 50 H 0.054 0.946 51 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.347 -16.376 2.420 22.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.120 4.120 3 C -0.089 4.089 4 C -0.147 4.147 5 C -0.143 4.143 6 C -0.152 4.152 7 C -0.070 4.070 8 C -0.138 4.138 9 C 0.300 3.700 10 O -0.465 6.465 11 N -0.346 5.346 12 C 0.041 3.959 13 H 0.093 0.907 14 C 0.009 3.991 15 N -0.321 5.321 16 C -0.382 4.382 17 H 0.070 0.930 18 C -0.242 4.242 19 N -0.579 5.579 20 Si 0.790 3.210 21 H -0.219 1.219 22 H -0.216 1.216 23 H -0.194 1.194 24 C 0.048 3.952 25 C -0.161 4.161 26 C -0.105 4.105 27 H 0.092 0.908 28 C -0.191 4.191 29 C -0.134 4.134 30 H 0.071 0.929 31 H 0.090 0.910 32 H 0.073 0.927 33 H 0.091 0.909 34 H 0.098 0.902 35 H 0.157 0.843 36 H 0.152 0.848 37 H 0.130 0.870 38 H 0.126 0.874 39 H 0.148 0.852 40 H 0.243 0.757 41 H 0.033 0.967 42 H 0.049 0.951 43 H 0.059 0.941 44 H 0.075 0.925 45 H 0.011 0.989 46 H 0.094 0.906 47 H 0.079 0.921 48 H 0.078 0.922 49 H 0.088 0.912 50 H 0.073 0.927 51 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -14.778 -16.699 2.826 22.477 hybrid contribution 0.321 1.714 0.376 1.784 sum -14.457 -14.985 3.202 21.066 Atomic orbital electron populations 1.21716 0.93744 1.02453 1.02004 1.20572 0.96880 0.91179 1.03376 1.20168 0.98690 0.97232 0.92848 1.21269 1.00230 0.94775 0.98383 1.21321 0.99352 0.95568 0.98038 1.21174 1.00640 1.00376 0.93054 1.19438 0.98718 0.94933 0.93887 1.20708 0.93305 1.03195 0.96565 1.20916 0.90188 0.78564 0.80323 1.90663 1.59762 1.41618 1.54432 1.45838 1.12992 1.52085 1.23677 1.21232 0.82068 0.97613 0.94945 0.90697 1.21315 0.95104 0.86421 0.96263 1.44140 1.80045 1.05894 1.01976 1.19276 1.33579 0.86440 0.98931 0.92981 1.25702 0.98768 0.99825 0.99892 1.70174 1.37267 1.18287 1.32135 0.85374 0.78751 0.79226 0.77670 1.21879 1.21553 1.19405 1.20674 0.94862 0.97477 0.82171 1.22066 0.99547 0.94366 1.00129 1.21246 1.00905 0.95964 0.92393 0.90828 1.21746 0.99348 0.97363 1.00627 1.21032 1.00132 0.93731 0.98513 0.92897 0.91030 0.92673 0.90858 0.90233 0.84252 0.84754 0.87001 0.87353 0.85196 0.75676 0.96738 0.95055 0.94107 0.92544 0.98862 0.90583 0.92056 0.92169 0.91225 0.92662 0.85282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.83 9.89 71.98 0.71 -1.12 16 2 C -0.08 -1.31 6.06 29.85 0.18 -1.13 16 3 C -0.09 -1.96 5.13 -19.86 -0.10 -2.06 16 4 C -0.13 -2.82 9.70 22.27 0.22 -2.60 16 5 C -0.12 -3.06 10.05 22.27 0.22 -2.83 16 6 C -0.13 -3.78 9.70 22.27 0.22 -3.57 16 7 C -0.07 -1.87 4.37 -19.87 -0.09 -1.96 16 8 C -0.10 -2.43 5.83 29.10 0.17 -2.26 16 9 C 0.51 16.70 7.79 87.66 0.68 17.39 16 10 O -0.58 -23.86 15.70 -3.02 -0.05 -23.91 16 11 N -0.69 -21.62 4.25 -442.16 -1.88 -23.50 16 12 C 0.15 5.08 2.24 45.07 0.10 5.18 16 13 H 0.08 2.63 7.58 -2.38 -0.02 2.61 16 14 C 0.14 6.01 6.12 86.36 0.53 6.54 16 15 N -0.60 -29.41 2.91 -699.08 -2.03 -31.44 16 16 C -0.25 -13.83 9.58 84.03 0.81 -13.03 16 17 H 0.05 2.91 7.88 -2.91 -0.02 2.89 16 18 C -0.05 -2.57 4.92 84.86 0.42 -2.15 16 19 N -0.93 -54.55 11.20 21.65 0.24 -54.31 16 20 Si 0.96 44.73 29.59 68.60 2.03 46.76 16 21 H -0.29 -13.68 7.11 99.48 0.71 -12.98 16 22 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 23 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 24 C 0.17 7.93 5.31 86.36 0.46 8.39 16 25 C -0.12 -3.98 5.20 30.67 0.16 -3.82 16 26 C -0.09 -2.50 2.48 -10.77 -0.03 -2.53 16 27 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 28 C -0.13 -2.89 9.05 71.98 0.65 -2.24 16 29 C -0.12 -2.81 9.36 22.27 0.21 -2.60 16 30 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 33 H 0.07 1.12 8.09 -2.38 -0.02 1.10 16 34 H 0.08 1.11 8.08 -2.39 -0.02 1.09 16 35 H 0.14 2.31 8.06 -2.91 -0.02 2.28 16 36 H 0.13 2.72 8.06 -2.91 -0.02 2.70 16 37 H 0.11 3.20 8.06 -2.91 -0.02 3.18 16 38 H 0.11 2.57 8.09 -2.39 -0.02 2.55 16 39 H 0.13 2.30 8.08 -2.39 -0.02 2.28 16 40 H 0.41 11.30 6.64 -92.71 -0.62 10.69 16 41 H 0.01 0.67 8.14 -2.39 -0.02 0.65 16 42 H 0.03 1.52 7.93 -2.39 -0.02 1.50 16 43 H 0.25 14.17 8.31 -92.71 -0.77 13.40 16 44 H 0.06 2.93 6.06 -2.39 -0.01 2.92 16 45 H -0.01 -0.33 8.14 -2.39 -0.02 -0.35 16 46 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 47 H 0.06 1.90 6.41 -2.39 -0.02 1.88 16 48 H 0.06 1.21 7.54 -2.39 -0.02 1.20 16 49 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 50 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 51 H 0.13 2.67 8.06 -2.91 -0.02 2.65 16 Total: -1.00 -69.69 403.96 4.10 -65.59 By element: Atomic # 1 Polarization: 26.95 SS G_CDS: 0.28 Total: 27.23 kcal Atomic # 6 Polarization: -11.94 SS G_CDS: 5.51 Total: -6.42 kcal Atomic # 7 Polarization: -105.58 SS G_CDS: -3.67 Total: -109.26 kcal Atomic # 8 Polarization: -23.86 SS G_CDS: -0.05 Total: -23.91 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.76 kcal Total: -69.69 4.10 -65.59 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000967006434.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.135 kcal (2) G-P(sol) polarization free energy of solvation -69.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds