Wall clock time and date at job start Tue Mar 31 2020 16:39:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50699 * 109.47252 * 2 1 4 4 C 1.38258 * 120.00149 * 269.98000 * 3 2 1 5 5 C 1.38215 * 120.00136 * 180.02562 * 4 3 2 6 6 C 1.38258 * 119.99696 * 0.08472 * 5 4 3 7 7 C 1.38206 * 120.00189 * 359.88878 * 6 5 4 8 8 C 1.50700 * 119.99883 * 180.34660 * 7 6 5 9 9 C 1.50702 * 109.47008 * 269.72124 * 8 7 6 10 10 O 1.21279 * 119.99767 * 0.02562 * 9 8 7 11 11 N 1.34777 * 120.00042 * 179.97438 * 9 8 7 12 12 C 1.46502 * 120.00222 * 180.02562 * 11 9 8 13 13 H 1.08992 * 109.49312 * 324.93472 * 12 11 9 14 14 C 1.53194 * 109.49592 * 85.00028 * 12 11 9 15 15 N 1.46925 * 108.77107 * 174.58865 * 14 12 11 16 16 C 1.36942 * 120.62959 * 126.37062 * 15 14 12 17 17 H 1.07994 * 119.99560 * 332.61953 * 16 15 14 18 18 C 1.38806 * 119.99721 * 152.62212 * 16 15 14 19 19 N 1.31625 * 119.99774 * 159.36536 * 18 16 15 20 20 Si 1.86796 * 120.00429 * 339.35751 * 18 16 15 21 21 H 1.48502 * 109.47158 * 92.90149 * 20 18 16 22 22 H 1.48504 * 109.47355 * 212.90260 * 20 18 16 23 23 H 1.48500 * 109.47250 * 332.90773 * 20 18 16 24 24 C 1.46931 * 118.74078 * 306.38892 * 15 14 12 25 25 C 1.53194 * 108.77198 * 53.61287 * 24 15 14 26 26 C 1.53038 * 109.49654 * 204.83825 * 12 11 9 27 27 H 1.08993 * 109.46272 * 298.70117 * 26 12 11 28 28 C 1.53005 * 109.46154 * 58.66193 * 26 12 11 29 29 C 1.38219 * 120.00082 * 89.99291 * 3 2 1 30 30 H 1.08997 * 109.46932 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47268 * 300.00457 * 1 2 3 32 32 H 1.09008 * 109.46635 * 60.00291 * 1 2 3 33 33 H 1.08995 * 109.47582 * 239.99991 * 2 1 3 34 34 H 1.09002 * 109.46823 * 120.00129 * 2 1 3 35 35 H 1.08003 * 119.99632 * 359.96903 * 4 3 2 36 36 H 1.07995 * 119.99654 * 179.97438 * 5 4 3 37 37 H 1.08004 * 119.99214 * 179.97438 * 6 5 4 38 38 H 1.09002 * 109.47415 * 29.72329 * 8 7 6 39 39 H 1.09002 * 109.47456 * 149.72278 * 8 7 6 40 40 H 0.97004 * 119.99654 * 359.97438 * 11 9 8 41 41 H 1.08997 * 109.58745 * 294.37223 * 14 12 11 42 42 H 1.08999 * 109.58801 * 54.66208 * 14 12 11 43 43 H 0.96996 * 119.99939 * 179.97438 * 19 18 16 44 44 H 1.08995 * 109.58767 * 173.39762 * 24 15 14 45 45 H 1.09005 * 109.58289 * 293.68288 * 24 15 14 46 46 H 1.08995 * 109.50029 * 65.31478 * 25 24 15 47 47 H 1.08996 * 109.49561 * 185.41892 * 25 24 15 48 48 H 1.08998 * 109.46707 * 59.99888 * 28 26 12 49 49 H 1.08996 * 109.46889 * 179.97438 * 28 26 12 50 50 H 1.08993 * 109.47317 * 299.99825 * 28 26 12 51 51 H 1.08000 * 119.99886 * 359.97438 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2632 2.0724 -1.1973 5 6 2.7245 3.3753 -1.1973 6 6 2.9567 4.0264 0.0001 7 6 2.7254 3.3752 1.1969 8 6 2.9711 4.0875 2.5020 9 6 4.3920 3.8499 2.9443 10 8 5.1324 3.1696 2.2661 11 7 4.8403 4.3943 4.0928 12 6 6.2218 4.1639 4.5224 13 1 6.5276 3.1567 4.2393 14 6 7.1437 5.1862 3.8501 15 7 8.5009 5.0255 4.3894 16 6 9.5675 4.8401 3.5508 17 1 9.4211 4.3802 2.5847 18 6 10.8366 5.2431 3.9426 19 7 11.8994 4.7269 3.3625 20 14 11.0364 6.5182 5.2930 21 1 11.1876 5.8335 6.6020 22 1 12.2428 7.3410 5.0224 23 1 9.8377 7.3940 5.3281 24 6 8.6920 5.0671 5.8457 25 6 7.7528 4.0461 6.4955 26 6 6.3168 4.3190 6.0420 27 1 6.0343 5.3339 6.3217 28 6 5.3713 3.3228 6.7162 29 6 2.2626 2.0724 1.1970 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8901 33 1 1.8934 -0.5138 -0.8899 34 1 1.8933 -0.5139 0.8900 35 1 2.0840 1.5630 -2.1326 36 1 2.9052 3.8841 -2.1326 37 1 3.3175 5.0444 0.0000 38 1 2.8059 5.1567 2.3692 39 1 2.2863 3.7054 3.2591 40 1 4.2484 4.9394 4.6346 41 1 7.1556 5.0151 2.7737 42 1 6.7834 6.1941 4.0560 43 1 12.7863 5.0088 3.6360 44 1 9.7255 4.8175 6.0859 45 1 8.4618 6.0661 6.2160 46 1 8.0445 3.0401 6.1942 47 1 7.8145 4.1339 7.5802 48 1 5.6532 2.3078 6.4362 49 1 5.4392 3.4329 7.7985 50 1 4.3484 3.5177 6.3943 51 1 2.0821 1.5635 2.1323 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000967006436.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:39:45 Heat of formation + Delta-G solvation = -7.318760 kcal Electronic energy + Delta-G solvation = -28493.810999 eV Core-core repulsion = 24778.754956 eV Total energy + Delta-G solvation = -3715.056042 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.16431 -39.23398 -37.79765 -34.69817 -34.47171 -33.09841 -32.46436 -31.39361 -29.79941 -29.42804 -27.89095 -27.14227 -24.09763 -23.89790 -22.95469 -22.03655 -21.28224 -20.76759 -20.02695 -19.43665 -16.93200 -16.83612 -16.55253 -15.94443 -15.78707 -15.18731 -14.97659 -14.87093 -14.12166 -13.97992 -13.88889 -13.73706 -13.72654 -13.42237 -13.26347 -13.20051 -12.95819 -12.63915 -12.23227 -12.16576 -12.12961 -12.02127 -11.85747 -11.65846 -11.42325 -11.28350 -10.99529 -10.92717 -10.86994 -10.85872 -10.64514 -10.12770 -9.91427 -9.74635 -9.62795 -9.41696 -8.95110 -8.80706 -8.62990 -8.48519 -6.94679 -5.90479 -3.26959 1.29767 1.37793 2.85782 3.31263 3.33073 3.49327 3.52244 3.80371 4.51276 4.55519 4.58753 4.75271 4.91172 4.95362 4.98960 5.04294 5.10275 5.12892 5.14661 5.19931 5.26311 5.31359 5.33838 5.44794 5.45680 5.52756 5.68297 5.70622 5.75650 5.83056 5.84658 5.91064 5.93853 6.01941 6.05017 6.05925 6.11626 6.27549 6.35771 6.42882 6.50445 6.52188 6.57049 6.58024 6.62763 6.66821 6.80568 6.96899 6.98502 7.72502 8.00216 8.37841 8.48086 8.98353 9.75641 10.11416 11.25576 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.016829 B = 0.002726 C = 0.002523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1663.361360 B =10269.193658 C =11096.843055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.085 4.085 3 C -0.083 4.083 4 C -0.120 4.120 5 C -0.116 4.116 6 C -0.108 4.108 7 C -0.059 4.059 8 C -0.103 4.103 9 C 0.509 3.491 10 O -0.523 6.523 11 N -0.724 5.724 12 C 0.132 3.868 13 H 0.089 0.911 14 C 0.145 3.855 15 N -0.601 5.601 16 C -0.257 4.257 17 H 0.086 0.914 18 C 0.023 3.977 19 N -0.908 5.908 20 Si 0.883 3.117 21 H -0.289 1.289 22 H -0.304 1.304 23 H -0.272 1.272 24 C 0.122 3.878 25 C -0.126 4.126 26 C -0.092 4.092 27 H 0.068 0.932 28 C -0.143 4.143 29 C -0.103 4.103 30 H 0.056 0.944 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.118 0.882 36 H 0.121 0.879 37 H 0.120 0.880 38 H 0.101 0.899 39 H 0.099 0.901 40 H 0.394 0.606 41 H 0.066 0.934 42 H 0.021 0.979 43 H 0.262 0.738 44 H 0.074 0.926 45 H 0.025 0.975 46 H 0.067 0.933 47 H 0.059 0.941 48 H 0.053 0.947 49 H 0.052 0.948 50 H 0.049 0.951 51 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.445 -3.532 -0.267 25.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.123 4.123 3 C -0.083 4.083 4 C -0.138 4.138 5 C -0.134 4.134 6 C -0.126 4.126 7 C -0.059 4.059 8 C -0.143 4.143 9 C 0.294 3.706 10 O -0.397 6.397 11 N -0.376 5.376 12 C 0.027 3.973 13 H 0.107 0.893 14 C 0.017 3.983 15 N -0.325 5.325 16 C -0.385 4.385 17 H 0.104 0.896 18 C -0.176 4.176 19 N -0.551 5.551 20 Si 0.714 3.286 21 H -0.216 1.216 22 H -0.232 1.232 23 H -0.197 1.197 24 C -0.004 4.004 25 C -0.166 4.166 26 C -0.111 4.111 27 H 0.086 0.914 28 C -0.201 4.201 29 C -0.121 4.121 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.089 0.911 34 H 0.090 0.910 35 H 0.136 0.864 36 H 0.139 0.861 37 H 0.138 0.862 38 H 0.119 0.881 39 H 0.117 0.883 40 H 0.227 0.773 41 H 0.085 0.915 42 H 0.039 0.961 43 H 0.072 0.928 44 H 0.092 0.908 45 H 0.043 0.957 46 H 0.086 0.914 47 H 0.077 0.923 48 H 0.073 0.927 49 H 0.071 0.929 50 H 0.068 0.932 51 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -24.696 -4.040 -0.814 25.037 hybrid contribution 0.088 1.093 1.067 1.530 sum -24.608 -2.946 0.253 24.785 Atomic orbital electron populations 1.21743 0.94856 1.01547 1.02102 1.20535 0.95981 0.92828 1.02929 1.19808 0.99376 0.96030 0.93128 1.20976 1.00510 0.94996 0.97344 1.21070 0.99435 0.94990 0.97895 1.20975 0.99501 1.00160 0.92009 1.19237 0.98701 0.94355 0.93653 1.20698 0.95103 1.02379 0.96126 1.20436 0.89139 0.79929 0.81066 1.90784 1.57721 1.38037 1.53202 1.46095 1.14142 1.53328 1.24018 1.21684 0.80058 1.02078 0.93477 0.89263 1.21211 0.84760 0.94418 0.97871 1.44288 1.03020 1.84597 1.00591 1.18952 0.85148 1.33779 1.00665 0.89613 1.25270 0.95343 0.98943 0.98044 1.69848 0.97642 1.43088 1.44511 0.86945 0.76710 0.83402 0.81567 1.21635 1.23189 1.19668 1.21400 0.98719 0.95590 0.84650 1.22071 0.93918 1.01563 0.99070 1.21297 0.96405 0.99304 0.94072 0.91395 1.21830 0.98720 0.99621 0.99890 1.20800 0.99857 0.93932 0.97506 0.92521 0.92615 0.92633 0.91074 0.91043 0.86410 0.86129 0.86235 0.88099 0.88313 0.77280 0.91503 0.96122 0.92799 0.90777 0.95698 0.91401 0.92272 0.92743 0.92924 0.93151 0.86494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 9.90 37.16 0.37 -0.66 16 2 C -0.09 -0.74 6.06 -27.88 -0.17 -0.91 16 3 C -0.08 -0.91 5.13 -104.62 -0.54 -1.45 16 4 C -0.12 -1.30 9.70 -39.58 -0.38 -1.68 16 5 C -0.12 -1.30 10.05 -39.58 -0.40 -1.70 16 6 C -0.11 -1.30 9.70 -39.59 -0.38 -1.68 16 7 C -0.06 -0.71 4.37 -104.63 -0.46 -1.16 16 8 C -0.10 -1.03 5.83 -29.03 -0.17 -1.20 16 9 C 0.51 7.27 7.79 -10.98 -0.09 7.19 16 10 O -0.52 -10.25 15.70 5.56 0.09 -10.17 16 11 N -0.72 -9.38 4.37 -53.69 -0.23 -9.61 16 12 C 0.13 2.23 2.06 -67.81 -0.14 2.09 16 13 H 0.09 1.80 7.58 -51.93 -0.39 1.41 16 14 C 0.14 2.99 6.09 -3.71 -0.02 2.97 16 15 N -0.60 -14.66 2.77 -172.32 -0.48 -15.14 16 16 C -0.26 -7.46 10.03 -15.06 -0.15 -7.61 16 17 H 0.09 2.72 8.06 -52.49 -0.42 2.29 16 18 C 0.02 0.67 5.23 -17.43 -0.09 0.58 16 19 N -0.91 -28.52 13.97 55.49 0.78 -27.74 16 20 Si 0.88 22.64 24.34 -169.99 -4.14 18.51 16 21 H -0.29 -7.08 6.62 56.52 0.37 -6.70 16 22 H -0.30 -7.92 7.11 56.52 0.40 -7.52 16 23 H -0.27 -6.81 6.64 56.52 0.38 -6.44 16 24 C 0.12 2.65 4.21 -3.71 -0.02 2.63 16 25 C -0.13 -2.18 5.36 -26.61 -0.14 -2.32 16 26 C -0.09 -1.33 2.27 -90.57 -0.21 -1.54 16 27 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 28 C -0.14 -1.68 9.02 37.16 0.34 -1.34 16 29 C -0.10 -1.20 9.36 -39.58 -0.37 -1.57 16 30 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 31 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.05 0.39 8.14 -51.92 -0.42 -0.04 16 33 H 0.07 0.57 8.08 -51.93 -0.42 0.15 16 34 H 0.07 0.61 8.09 -51.93 -0.42 0.19 16 35 H 0.12 1.03 8.06 -52.48 -0.42 0.61 16 36 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 37 H 0.12 1.29 8.06 -52.48 -0.42 0.87 16 38 H 0.10 0.79 8.08 -51.93 -0.42 0.37 16 39 H 0.10 0.73 8.09 -51.93 -0.42 0.31 16 40 H 0.39 3.70 8.30 -40.82 -0.34 3.36 16 41 H 0.07 1.53 7.93 -51.93 -0.41 1.12 16 42 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.26 7.78 8.31 -40.82 -0.34 7.45 16 44 H 0.07 1.77 4.50 -51.93 -0.23 1.54 16 45 H 0.03 0.53 7.07 -51.93 -0.37 0.16 16 46 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 47 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 48 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 49 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 50 H 0.05 0.50 7.36 -51.93 -0.38 0.12 16 51 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 LS Contribution 400.63 15.07 6.04 6.04 Total: -1.00 -34.86 400.63 -9.89 -44.74 By element: Atomic # 1 Polarization: 11.66 SS G_CDS: -8.91 Total: 2.75 kcal Atomic # 6 Polarization: -6.35 SS G_CDS: -3.02 Total: -9.37 kcal Atomic # 7 Polarization: -52.56 SS G_CDS: 0.06 Total: -52.49 kcal Atomic # 8 Polarization: -10.25 SS G_CDS: 0.09 Total: -10.17 kcal Atomic # 14 Polarization: 22.64 SS G_CDS: -4.14 Total: 18.51 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -34.86 -9.89 -44.74 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000967006436.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.423 kcal (2) G-P(sol) polarization free energy of solvation -34.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds