Wall clock time and date at job start Tue Mar 31 2020 16:39:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50699 * 109.47252 * 2 1 4 4 C 1.38258 * 120.00149 * 269.98000 * 3 2 1 5 5 C 1.38215 * 120.00136 * 180.02562 * 4 3 2 6 6 C 1.38258 * 119.99696 * 0.08472 * 5 4 3 7 7 C 1.38206 * 120.00189 * 359.88878 * 6 5 4 8 8 C 1.50700 * 119.99883 * 180.34660 * 7 6 5 9 9 C 1.50702 * 109.47008 * 269.72124 * 8 7 6 10 10 O 1.21279 * 119.99767 * 0.02562 * 9 8 7 11 11 N 1.34777 * 120.00042 * 179.97438 * 9 8 7 12 12 C 1.46502 * 120.00222 * 180.02562 * 11 9 8 13 13 H 1.08992 * 109.49312 * 324.93472 * 12 11 9 14 14 C 1.53194 * 109.49592 * 85.00028 * 12 11 9 15 15 N 1.46925 * 108.77107 * 174.58865 * 14 12 11 16 16 C 1.36942 * 120.62959 * 126.37062 * 15 14 12 17 17 H 1.07994 * 119.99560 * 332.61953 * 16 15 14 18 18 C 1.38806 * 119.99721 * 152.62212 * 16 15 14 19 19 N 1.31625 * 119.99774 * 159.36536 * 18 16 15 20 20 Si 1.86796 * 120.00429 * 339.35751 * 18 16 15 21 21 H 1.48502 * 109.47158 * 92.90149 * 20 18 16 22 22 H 1.48504 * 109.47355 * 212.90260 * 20 18 16 23 23 H 1.48500 * 109.47250 * 332.90773 * 20 18 16 24 24 C 1.46931 * 118.74078 * 306.38892 * 15 14 12 25 25 C 1.53194 * 108.77198 * 53.61287 * 24 15 14 26 26 C 1.53038 * 109.49654 * 204.83825 * 12 11 9 27 27 H 1.08993 * 109.46272 * 298.70117 * 26 12 11 28 28 C 1.53005 * 109.46154 * 58.66193 * 26 12 11 29 29 C 1.38219 * 120.00082 * 89.99291 * 3 2 1 30 30 H 1.08997 * 109.46932 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47268 * 300.00457 * 1 2 3 32 32 H 1.09008 * 109.46635 * 60.00291 * 1 2 3 33 33 H 1.08995 * 109.47582 * 239.99991 * 2 1 3 34 34 H 1.09002 * 109.46823 * 120.00129 * 2 1 3 35 35 H 1.08003 * 119.99632 * 359.96903 * 4 3 2 36 36 H 1.07995 * 119.99654 * 179.97438 * 5 4 3 37 37 H 1.08004 * 119.99214 * 179.97438 * 6 5 4 38 38 H 1.09002 * 109.47415 * 29.72329 * 8 7 6 39 39 H 1.09002 * 109.47456 * 149.72278 * 8 7 6 40 40 H 0.97004 * 119.99654 * 359.97438 * 11 9 8 41 41 H 1.08997 * 109.58745 * 294.37223 * 14 12 11 42 42 H 1.08999 * 109.58801 * 54.66208 * 14 12 11 43 43 H 0.96996 * 119.99939 * 179.97438 * 19 18 16 44 44 H 1.08995 * 109.58767 * 173.39762 * 24 15 14 45 45 H 1.09005 * 109.58289 * 293.68288 * 24 15 14 46 46 H 1.08995 * 109.50029 * 65.31478 * 25 24 15 47 47 H 1.08996 * 109.49561 * 185.41892 * 25 24 15 48 48 H 1.08998 * 109.46707 * 59.99888 * 28 26 12 49 49 H 1.08996 * 109.46889 * 179.97438 * 28 26 12 50 50 H 1.08993 * 109.47317 * 299.99825 * 28 26 12 51 51 H 1.08000 * 119.99886 * 359.97438 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2632 2.0724 -1.1973 5 6 2.7245 3.3753 -1.1973 6 6 2.9567 4.0264 0.0001 7 6 2.7254 3.3752 1.1969 8 6 2.9711 4.0875 2.5020 9 6 4.3920 3.8499 2.9443 10 8 5.1324 3.1696 2.2661 11 7 4.8403 4.3943 4.0928 12 6 6.2218 4.1639 4.5224 13 1 6.5276 3.1567 4.2393 14 6 7.1437 5.1862 3.8501 15 7 8.5009 5.0255 4.3894 16 6 9.5675 4.8401 3.5508 17 1 9.4211 4.3802 2.5847 18 6 10.8366 5.2431 3.9426 19 7 11.8994 4.7269 3.3625 20 14 11.0364 6.5182 5.2930 21 1 11.1876 5.8335 6.6020 22 1 12.2428 7.3410 5.0224 23 1 9.8377 7.3940 5.3281 24 6 8.6920 5.0671 5.8457 25 6 7.7528 4.0461 6.4955 26 6 6.3168 4.3190 6.0420 27 1 6.0343 5.3339 6.3217 28 6 5.3713 3.3228 6.7162 29 6 2.2626 2.0724 1.1970 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8901 33 1 1.8934 -0.5138 -0.8899 34 1 1.8933 -0.5139 0.8900 35 1 2.0840 1.5630 -2.1326 36 1 2.9052 3.8841 -2.1326 37 1 3.3175 5.0444 0.0000 38 1 2.8059 5.1567 2.3692 39 1 2.2863 3.7054 3.2591 40 1 4.2484 4.9394 4.6346 41 1 7.1556 5.0151 2.7737 42 1 6.7834 6.1941 4.0560 43 1 12.7863 5.0088 3.6360 44 1 9.7255 4.8175 6.0859 45 1 8.4618 6.0661 6.2160 46 1 8.0445 3.0401 6.1942 47 1 7.8145 4.1339 7.5802 48 1 5.6532 2.3078 6.4362 49 1 5.4392 3.4329 7.7985 50 1 4.3484 3.5177 6.3943 51 1 2.0821 1.5635 2.1323 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000967006436.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:39:44 Heat of formation + Delta-G solvation = -29.281015 kcal Electronic energy + Delta-G solvation = -28494.763353 eV Core-core repulsion = 24778.754956 eV Total energy + Delta-G solvation = -3716.008397 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.28511 -40.26929 -39.18784 -36.26632 -35.30763 -34.53168 -33.42370 -33.33882 -31.06220 -30.33194 -29.27716 -28.29760 -25.65635 -24.79704 -24.35876 -22.96272 -22.92073 -21.76479 -21.31340 -20.62824 -18.82358 -18.01792 -17.52722 -17.28970 -16.90260 -16.75205 -16.17815 -15.85931 -15.58303 -15.27751 -15.15041 -15.11240 -14.65117 -14.59890 -14.49693 -14.35652 -14.04014 -13.78944 -13.72859 -13.59710 -13.29056 -12.98951 -12.84592 -12.70878 -12.59432 -12.57362 -12.49548 -12.21719 -12.13391 -11.78705 -11.69495 -11.62778 -11.60827 -11.38149 -11.27830 -10.95805 -10.72880 -10.10047 -9.66943 -9.48366 -8.94097 -8.19861 -5.53862 0.43426 0.52017 1.28128 1.39915 1.50573 1.73349 2.21870 2.39250 2.89885 3.03830 3.35714 3.68355 3.73415 3.83711 3.91525 3.99680 4.00564 4.12714 4.24029 4.29250 4.32272 4.40926 4.42842 4.51308 4.52602 4.57311 4.58867 4.62984 4.70288 4.80218 4.82132 4.85158 4.95460 4.98011 5.01960 5.08101 5.09398 5.14611 5.16722 5.20710 5.24056 5.38211 5.39076 5.45332 5.58192 5.61318 5.67673 5.73519 5.82142 6.08145 6.15615 6.68047 6.87727 7.40766 7.57880 7.95397 9.00742 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.016829 B = 0.002726 C = 0.002523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1663.361360 B =10269.193658 C =11096.843055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.085 4.085 3 C -0.093 4.093 4 C -0.131 4.131 5 C -0.129 4.129 6 C -0.131 4.131 7 C -0.075 4.075 8 C -0.091 4.091 9 C 0.507 3.493 10 O -0.585 6.585 11 N -0.706 5.706 12 C 0.148 3.852 13 H 0.046 0.954 14 C 0.145 3.855 15 N -0.617 5.617 16 C -0.256 4.256 17 H 0.032 0.968 18 C -0.039 4.039 19 N -0.960 5.960 20 Si 0.961 3.039 21 H -0.266 1.266 22 H -0.310 1.310 23 H -0.256 1.256 24 C 0.114 3.886 25 C -0.122 4.122 26 C -0.083 4.083 27 H 0.095 0.905 28 C -0.136 4.136 29 C -0.119 4.119 30 H 0.069 0.931 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.075 0.925 34 H 0.070 0.930 35 H 0.135 0.865 36 H 0.135 0.865 37 H 0.124 0.876 38 H 0.129 0.871 39 H 0.135 0.865 40 H 0.418 0.582 41 H 0.026 0.974 42 H 0.044 0.956 43 H 0.263 0.737 44 H 0.049 0.951 45 H 0.045 0.955 46 H 0.044 0.956 47 H 0.097 0.903 48 H 0.037 0.963 49 H 0.075 0.925 50 H 0.073 0.927 51 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.770 -2.213 2.893 29.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.123 4.123 3 C -0.093 4.093 4 C -0.149 4.149 5 C -0.146 4.146 6 C -0.149 4.149 7 C -0.075 4.075 8 C -0.130 4.130 9 C 0.295 3.705 10 O -0.464 6.464 11 N -0.359 5.359 12 C 0.041 3.959 13 H 0.065 0.935 14 C 0.019 3.981 15 N -0.342 5.342 16 C -0.385 4.385 17 H 0.050 0.950 18 C -0.233 4.233 19 N -0.606 5.606 20 Si 0.788 3.212 21 H -0.193 1.193 22 H -0.239 1.239 23 H -0.180 1.180 24 C -0.010 4.010 25 C -0.161 4.161 26 C -0.102 4.102 27 H 0.113 0.887 28 C -0.193 4.193 29 C -0.137 4.137 30 H 0.088 0.912 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.094 0.906 34 H 0.089 0.911 35 H 0.153 0.847 36 H 0.153 0.847 37 H 0.142 0.858 38 H 0.147 0.853 39 H 0.153 0.847 40 H 0.256 0.744 41 H 0.045 0.955 42 H 0.062 0.938 43 H 0.072 0.928 44 H 0.067 0.933 45 H 0.063 0.937 46 H 0.063 0.937 47 H 0.115 0.885 48 H 0.056 0.944 49 H 0.094 0.906 50 H 0.092 0.908 51 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -28.110 -2.698 2.400 28.341 hybrid contribution 1.107 0.596 -0.057 1.259 sum -27.003 -2.102 2.344 27.186 Atomic orbital electron populations 1.21704 0.93475 1.02436 1.02115 1.20582 0.97132 0.91441 1.03119 1.20163 0.98925 0.97123 0.93102 1.21269 1.00368 0.95068 0.98232 1.21369 0.99327 0.95469 0.98480 1.21231 1.00207 1.00791 0.92653 1.19530 0.98719 0.94800 0.94498 1.20736 0.92151 1.04134 0.96014 1.21272 0.90478 0.78461 0.80327 1.90774 1.59769 1.40832 1.55035 1.45835 1.12737 1.53251 1.24036 1.21181 0.81241 0.98228 0.95282 0.93540 1.21284 0.84114 0.96730 0.95995 1.44356 1.03029 1.85212 1.01634 1.18753 0.87155 1.32891 0.99743 0.94992 1.26023 0.94623 1.00906 1.01751 1.70007 0.98253 1.44876 1.47481 0.85708 0.76647 0.79906 0.78955 1.19255 1.23891 1.17984 1.21549 0.98694 0.97892 0.82878 1.22008 0.94523 0.98695 1.00886 1.21267 0.95469 1.01823 0.91648 0.88678 1.21770 0.98951 0.97561 1.00996 1.21069 1.00201 0.94148 0.98278 0.91181 0.92633 0.92577 0.90612 0.91136 0.84689 0.84692 0.85763 0.85273 0.84719 0.74387 0.95537 0.93832 0.92791 0.93310 0.93683 0.93680 0.88501 0.94419 0.90593 0.90757 0.85452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.78 9.90 71.98 0.71 -1.06 16 2 C -0.09 -1.41 6.06 29.85 0.18 -1.22 16 3 C -0.09 -2.01 5.13 -19.86 -0.10 -2.11 16 4 C -0.13 -2.82 9.70 22.27 0.22 -2.60 16 5 C -0.13 -2.90 10.05 22.27 0.22 -2.68 16 6 C -0.13 -3.15 9.70 22.27 0.22 -2.93 16 7 C -0.08 -1.74 4.37 -19.87 -0.09 -1.83 16 8 C -0.09 -1.60 5.83 29.10 0.17 -1.43 16 9 C 0.51 14.04 7.79 87.66 0.68 14.72 16 10 O -0.58 -23.94 15.70 -3.03 -0.05 -23.99 16 11 N -0.71 -16.71 4.37 -442.17 -1.93 -18.64 16 12 C 0.15 4.85 2.06 45.07 0.09 4.95 16 13 H 0.05 1.95 7.58 -2.39 -0.02 1.94 16 14 C 0.15 6.08 6.09 86.36 0.53 6.61 16 15 N -0.62 -30.64 2.77 -699.09 -1.94 -32.58 16 16 C -0.26 -15.69 10.03 84.03 0.84 -14.85 16 17 H 0.03 2.24 8.06 -2.91 -0.02 2.22 16 18 C -0.04 -2.37 5.23 84.86 0.44 -1.92 16 19 N -0.96 -63.26 13.97 21.65 0.30 -62.96 16 20 Si 0.96 47.35 24.34 68.60 1.67 49.02 16 21 H -0.27 -12.11 6.62 99.48 0.66 -11.45 16 22 H -0.31 -15.51 7.11 99.48 0.71 -14.80 16 23 H -0.26 -11.82 6.64 99.48 0.66 -11.16 16 24 C 0.11 4.75 4.21 86.36 0.36 5.11 16 25 C -0.12 -3.88 5.36 30.67 0.16 -3.71 16 26 C -0.08 -2.12 2.27 -10.76 -0.02 -2.15 16 27 H 0.10 2.02 8.14 -2.39 -0.02 2.00 16 28 C -0.14 -2.58 9.02 71.98 0.65 -1.93 16 29 C -0.12 -2.70 9.36 22.27 0.21 -2.49 16 30 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.06 0.70 8.14 -2.38 -0.02 0.68 16 33 H 0.08 1.15 8.08 -2.39 -0.02 1.13 16 34 H 0.07 1.16 8.09 -2.39 -0.02 1.14 16 35 H 0.14 2.28 8.06 -2.91 -0.02 2.26 16 36 H 0.14 2.48 8.06 -2.91 -0.02 2.45 16 37 H 0.12 2.71 8.06 -2.91 -0.02 2.68 16 38 H 0.13 1.56 8.08 -2.39 -0.02 1.54 16 39 H 0.13 1.41 8.09 -2.39 -0.02 1.39 16 40 H 0.42 5.96 8.30 -92.71 -0.77 5.19 16 41 H 0.03 1.29 7.93 -2.39 -0.02 1.27 16 42 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 43 H 0.26 16.28 8.31 -92.71 -0.77 15.51 16 44 H 0.05 2.27 4.50 -2.39 -0.01 2.26 16 45 H 0.05 1.72 7.07 -2.38 -0.02 1.70 16 46 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 47 H 0.10 2.40 8.14 -2.39 -0.02 2.38 16 48 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 49 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 50 H 0.07 1.08 7.36 -2.39 -0.02 1.06 16 51 H 0.13 2.48 8.06 -2.91 -0.02 2.46 16 Total: -1.00 -83.80 400.63 3.57 -80.23 By element: Atomic # 1 Polarization: 20.40 SS G_CDS: 0.03 Total: 20.44 kcal Atomic # 6 Polarization: -17.01 SS G_CDS: 5.48 Total: -11.53 kcal Atomic # 7 Polarization: -110.61 SS G_CDS: -3.57 Total: -114.18 kcal Atomic # 8 Polarization: -23.94 SS G_CDS: -0.05 Total: -23.99 kcal Atomic # 14 Polarization: 47.35 SS G_CDS: 1.67 Total: 49.02 kcal Total: -83.80 3.57 -80.23 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000967006436.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.953 kcal (2) G-P(sol) polarization free energy of solvation -83.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.234 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds