Wall clock time and date at job start Tue Mar 31 2020 16:39:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50695 * 109.47412 * 2 1 4 4 C 1.38240 * 119.99652 * 90.00525 * 3 2 1 5 5 C 1.38238 * 119.99863 * 179.97438 * 4 3 2 6 6 C 1.38235 * 120.00183 * 359.97438 * 5 4 3 7 7 C 1.50693 * 120.00158 * 179.97438 * 6 5 4 8 8 C 1.50702 * 109.46939 * 90.00173 * 7 6 5 9 9 O 1.21282 * 119.99923 * 0.02562 * 8 7 6 10 10 N 1.34776 * 119.99880 * 180.27565 * 8 7 6 11 11 C 1.46501 * 119.99775 * 179.72507 * 10 8 7 12 12 H 1.08997 * 109.49681 * 324.93596 * 11 10 8 13 13 C 1.53196 * 109.49964 * 85.00125 * 11 10 8 14 14 N 1.46930 * 108.77370 * 65.31323 * 13 11 10 15 15 C 1.36935 * 120.62951 * 233.58887 * 14 13 11 16 16 H 1.07997 * 120.00121 * 152.63023 * 15 14 13 17 17 C 1.38816 * 120.00052 * 332.62759 * 15 14 13 18 18 N 1.31621 * 119.99904 * 159.34789 * 17 15 14 19 19 Si 1.86804 * 120.00024 * 339.34163 * 17 15 14 20 20 H 1.48501 * 109.46888 * 92.94931 * 19 17 15 21 21 H 1.48496 * 109.47278 * 212.94748 * 19 17 15 22 22 H 1.48496 * 109.47097 * 332.95424 * 19 17 15 23 23 C 1.46921 * 118.73878 * 53.61600 * 14 13 11 24 24 C 1.53194 * 108.77293 * 306.38579 * 23 14 13 25 25 C 1.53038 * 109.49883 * 204.83631 * 11 10 8 26 26 H 1.08996 * 109.46402 * 181.39380 * 25 11 10 27 27 C 1.53011 * 109.45840 * 61.43391 * 25 11 10 28 28 C 1.38239 * 119.99930 * 0.27847 * 6 5 4 29 29 C 1.38235 * 119.99644 * 359.51001 * 28 6 5 30 30 H 1.08994 * 109.47214 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46825 * 299.99284 * 1 2 3 32 32 H 1.08997 * 109.47413 * 59.98905 * 1 2 3 33 33 H 1.09001 * 109.46825 * 240.00716 * 2 1 3 34 34 H 1.08994 * 109.47873 * 120.00909 * 2 1 3 35 35 H 1.07994 * 120.00123 * 359.97438 * 4 3 2 36 36 H 1.08001 * 119.99779 * 179.97438 * 5 4 3 37 37 H 1.08997 * 109.47254 * 330.00304 * 7 6 5 38 38 H 1.09001 * 109.47452 * 209.99835 * 7 6 5 39 39 H 0.96997 * 120.00610 * 359.72565 * 10 8 7 40 40 H 1.08998 * 109.59077 * 185.10189 * 13 11 10 41 41 H 1.08997 * 109.58393 * 305.38736 * 13 11 10 42 42 H 0.96998 * 119.99752 * 180.02562 * 18 17 15 43 43 H 1.08997 * 109.59129 * 66.16971 * 23 14 13 44 44 H 1.09000 * 109.58809 * 186.46061 * 23 14 13 45 45 H 1.09001 * 109.49864 * 174.58482 * 24 23 14 46 46 H 1.09001 * 109.50250 * 294.65186 * 24 23 14 47 47 H 1.08995 * 109.46829 * 60.00021 * 27 25 11 48 48 H 1.09000 * 109.47043 * 180.02562 * 27 25 11 49 49 H 1.08997 * 109.46862 * 300.00253 * 27 25 11 50 50 H 1.08001 * 119.99941 * 179.72586 * 28 6 5 51 51 H 1.08001 * 120.00004 * 180.27845 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.2629 2.0723 1.1972 5 6 2.7242 3.3754 1.1973 6 6 2.9556 4.0268 0.0002 7 6 3.4580 5.4475 0.0002 8 6 4.9650 5.4474 0.0014 9 8 5.5713 4.3970 0.0016 10 7 5.6389 6.6145 0.0072 11 6 7.1039 6.6144 0.0144 12 1 7.4647 5.7720 0.6046 13 6 7.6223 6.4916 -1.4220 14 7 7.2363 7.6968 -2.1686 15 6 6.5544 7.5958 -3.3518 16 1 5.9039 8.3970 -3.6702 17 6 6.6993 6.4638 -4.1421 18 7 5.7828 6.1651 -5.0383 19 14 8.1952 5.3645 -3.9336 20 1 7.8791 4.2750 -2.9753 21 1 8.5646 4.7771 -5.2465 22 1 9.3309 6.1673 -3.4133 23 6 7.5963 9.0121 -1.6219 24 6 7.0782 9.1066 -0.1833 25 6 7.6119 7.9222 0.6257 26 1 8.7017 7.9321 0.6081 27 6 7.1247 8.0319 2.0720 28 6 2.7201 3.3770 -1.1970 29 6 2.2629 2.0725 -1.1971 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5137 0.8901 32 1 -0.3634 0.5140 -0.8898 33 1 1.8933 -0.5137 -0.8901 34 1 1.8934 -0.5139 0.8898 35 1 2.0825 1.5633 2.1325 36 1 2.9039 3.8846 2.1326 37 1 3.0941 5.9616 0.8898 38 1 3.0954 5.9612 -0.8901 39 1 5.1541 7.4546 0.0067 40 1 8.7084 6.4003 -1.4120 41 1 7.1859 5.6114 -1.8939 42 1 5.8839 5.3739 -5.5902 43 1 8.6802 9.1262 -1.6280 44 1 7.1427 9.7963 -2.2280 45 1 7.4212 10.0384 0.2665 46 1 5.9884 9.0839 -0.1867 47 1 7.5057 7.1890 2.6486 48 1 7.4860 8.9635 2.5074 49 1 6.0349 8.0214 2.0900 50 1 2.8967 3.8874 -2.1323 51 1 2.0832 1.5633 -2.1324 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000968364629.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:39:48 Heat of formation + Delta-G solvation = -6.264741 kcal Electronic energy + Delta-G solvation = -29314.336835 eV Core-core repulsion = 25599.326499 eV Total energy + Delta-G solvation = -3715.010337 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -39.96768 -39.13958 -37.62548 -34.54894 -34.23479 -32.84228 -31.38355 -31.23705 -30.71790 -29.60763 -27.72575 -26.80707 -23.92991 -23.45022 -22.61351 -22.54686 -21.21898 -20.84842 -19.99788 -18.83514 -16.94721 -16.74009 -16.05902 -15.70978 -15.42830 -15.21676 -14.81850 -14.41449 -14.25963 -13.79830 -13.74228 -13.61432 -13.47739 -13.38260 -13.33401 -13.10329 -12.77029 -12.72166 -12.15582 -12.06045 -11.90726 -11.85044 -11.61675 -11.57212 -11.43212 -11.17436 -11.13107 -10.74855 -10.68651 -10.60493 -10.52209 -10.25443 -9.89284 -9.80494 -9.40204 -9.34554 -8.70613 -8.68249 -8.34725 -8.31032 -6.93245 -5.93518 -3.28601 1.50399 1.64082 3.19783 3.43474 3.53337 3.54446 3.65802 4.07741 4.58086 4.74879 4.85179 4.95763 4.97744 5.00945 5.11657 5.12533 5.18075 5.21207 5.29108 5.38934 5.44768 5.46453 5.50221 5.63176 5.71704 5.73924 5.76121 5.78686 5.81015 5.87097 5.96990 5.98474 6.06086 6.09064 6.13178 6.21695 6.25207 6.28745 6.33354 6.41085 6.51944 6.60312 6.60802 6.72427 6.77873 6.82554 6.84641 7.10573 7.21674 7.96793 8.07871 8.33256 8.80327 8.95390 9.74897 10.12014 11.22100 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.012551 B = 0.003835 C = 0.003202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2230.396258 B = 7299.193539 C = 8742.937194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.084 4.084 3 C -0.089 4.089 4 C -0.121 4.121 5 C -0.105 4.105 6 C -0.061 4.061 7 C -0.104 4.104 8 C 0.518 3.482 9 O -0.542 6.542 10 N -0.702 5.702 11 C 0.136 3.864 12 H 0.078 0.922 13 C 0.113 3.887 14 N -0.601 5.601 15 C -0.260 4.260 16 H 0.084 0.916 17 C 0.030 3.970 18 N -0.906 5.906 19 Si 0.874 3.126 20 H -0.284 1.284 21 H -0.304 1.304 22 H -0.272 1.272 23 C 0.145 3.855 24 C -0.130 4.130 25 C -0.094 4.094 26 H 0.077 0.923 27 C -0.143 4.143 28 C -0.096 4.096 29 C -0.116 4.116 30 H 0.054 0.946 31 H 0.054 0.946 32 H 0.056 0.944 33 H 0.070 0.930 34 H 0.068 0.932 35 H 0.116 0.884 36 H 0.116 0.884 37 H 0.095 0.905 38 H 0.106 0.894 39 H 0.397 0.603 40 H 0.029 0.971 41 H 0.081 0.919 42 H 0.261 0.739 43 H 0.022 0.978 44 H 0.063 0.937 45 H 0.058 0.942 46 H 0.059 0.941 47 H 0.050 0.950 48 H 0.051 0.949 49 H 0.053 0.947 50 H 0.125 0.875 51 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.192 -2.452 14.910 16.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.121 4.121 3 C -0.090 4.090 4 C -0.139 4.139 5 C -0.123 4.123 6 C -0.061 4.061 7 C -0.143 4.143 8 C 0.304 3.696 9 O -0.419 6.419 10 N -0.353 5.353 11 C 0.030 3.970 12 H 0.096 0.904 13 C -0.013 4.013 14 N -0.325 5.325 15 C -0.388 4.388 16 H 0.102 0.898 17 C -0.169 4.169 18 N -0.549 5.549 19 Si 0.704 3.296 20 H -0.211 1.211 21 H -0.232 1.232 22 H -0.197 1.197 23 C 0.019 3.981 24 C -0.169 4.169 25 C -0.113 4.113 26 H 0.096 0.904 27 C -0.200 4.200 28 C -0.114 4.114 29 C -0.134 4.134 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.075 0.925 33 H 0.088 0.912 34 H 0.087 0.913 35 H 0.134 0.866 36 H 0.134 0.866 37 H 0.113 0.887 38 H 0.124 0.876 39 H 0.232 0.768 40 H 0.047 0.953 41 H 0.099 0.901 42 H 0.071 0.929 43 H 0.040 0.960 44 H 0.081 0.919 45 H 0.076 0.924 46 H 0.078 0.922 47 H 0.069 0.931 48 H 0.070 0.930 49 H 0.072 0.928 50 H 0.143 0.857 51 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -6.804 -3.295 14.749 16.573 hybrid contribution 0.745 -0.249 -0.120 0.794 sum -6.060 -3.544 14.628 16.225 Atomic orbital electron populations 1.21741 0.94946 1.01376 1.02195 1.20511 0.95963 0.93002 1.02622 1.19818 0.99848 0.95974 0.93311 1.20860 1.01060 0.94825 0.97190 1.20887 0.99365 0.94893 0.97170 1.19281 0.98533 0.94877 0.93437 1.20670 0.93271 0.95406 1.04998 1.20307 0.89342 0.83929 0.76042 1.90691 1.70214 1.31363 1.49637 1.45776 1.06916 1.08126 1.74480 1.21436 0.80213 0.97078 0.98298 0.90403 1.21762 0.96779 0.91849 0.90926 1.44289 1.66279 0.99338 1.22573 1.18825 1.19237 1.05533 0.95181 0.89833 1.25212 0.97616 0.97834 0.96271 1.69820 1.32931 1.26839 1.25338 0.87064 0.85702 0.81009 0.75776 1.21139 1.23243 1.19692 1.20950 0.96682 0.88592 0.91832 1.22074 1.00634 0.96498 0.97699 1.21313 1.00584 0.95088 0.94365 0.90445 1.21826 1.01220 1.01018 0.95978 1.21120 0.97550 0.94815 0.97954 1.20963 1.00273 0.94799 0.97382 0.92671 0.92674 0.92510 0.91176 0.91322 0.86595 0.86582 0.88668 0.87617 0.76761 0.95305 0.90121 0.92871 0.96039 0.91859 0.92361 0.92221 0.93076 0.92964 0.92811 0.85661 0.86311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 9.89 37.16 0.37 -0.91 16 2 C -0.08 -0.86 6.06 -27.89 -0.17 -1.03 16 3 C -0.09 -1.18 5.13 -104.62 -0.54 -1.72 16 4 C -0.12 -1.58 9.70 -39.58 -0.38 -1.97 16 5 C -0.11 -1.47 9.70 -39.58 -0.38 -1.86 16 6 C -0.06 -0.95 4.37 -104.63 -0.46 -1.41 16 7 C -0.10 -1.52 5.83 -29.04 -0.17 -1.68 16 8 C 0.52 9.51 7.79 -10.98 -0.09 9.42 16 9 O -0.54 -12.19 15.70 5.56 0.09 -12.10 16 10 N -0.70 -11.87 4.25 -53.69 -0.23 -12.10 16 11 C 0.14 2.43 2.24 -67.81 -0.15 2.28 16 12 H 0.08 1.44 7.58 -51.93 -0.39 1.05 16 13 C 0.11 2.53 3.80 -3.71 -0.01 2.52 16 14 N -0.60 -13.74 2.69 -172.32 -0.46 -14.20 16 15 C -0.26 -7.07 10.04 -15.06 -0.15 -7.22 16 16 H 0.08 2.41 8.06 -52.49 -0.42 1.99 16 17 C 0.03 0.87 5.23 -17.43 -0.09 0.78 16 18 N -0.91 -27.76 13.97 55.49 0.78 -26.98 16 19 Si 0.87 23.32 24.35 -169.99 -4.14 19.18 16 20 H -0.28 -7.76 6.62 56.52 0.37 -7.39 16 21 H -0.30 -8.23 7.11 56.52 0.40 -7.83 16 22 H -0.27 -7.05 6.63 56.52 0.37 -6.68 16 23 C 0.15 2.67 6.52 -3.71 -0.02 2.65 16 24 C -0.13 -1.86 5.19 -26.61 -0.14 -2.00 16 25 C -0.09 -1.35 2.48 -90.57 -0.22 -1.57 16 26 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 27 C -0.14 -1.66 9.05 37.16 0.34 -1.32 16 28 C -0.10 -1.58 9.70 -39.58 -0.38 -1.96 16 29 C -0.12 -1.70 9.70 -39.58 -0.38 -2.08 16 30 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 32 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.07 0.70 8.09 -51.93 -0.42 0.28 16 34 H 0.07 0.64 8.08 -51.93 -0.42 0.22 16 35 H 0.12 1.23 8.06 -52.49 -0.42 0.81 16 36 H 0.12 1.39 8.06 -52.49 -0.42 0.97 16 37 H 0.10 1.06 8.09 -51.93 -0.42 0.64 16 38 H 0.11 1.53 8.08 -51.93 -0.42 1.11 16 39 H 0.40 5.93 6.64 -40.82 -0.27 5.66 16 40 H 0.03 0.65 7.07 -51.93 -0.37 0.28 16 41 H 0.08 2.12 4.50 -51.93 -0.23 1.88 16 42 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 43 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 44 H 0.06 1.16 7.93 -51.93 -0.41 0.75 16 45 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 46 H 0.06 0.85 6.41 -51.93 -0.33 0.52 16 47 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 48 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 49 H 0.05 0.60 7.54 -51.93 -0.39 0.21 16 50 H 0.13 2.15 8.06 -52.49 -0.42 1.72 16 51 H 0.12 1.54 8.06 -52.49 -0.42 1.12 16 LS Contribution 397.49 15.07 5.99 5.99 Total: -1.00 -33.45 397.49 -9.79 -43.24 By element: Atomic # 1 Polarization: 14.82 SS G_CDS: -8.77 Total: 6.05 kcal Atomic # 6 Polarization: -6.04 SS G_CDS: -3.05 Total: -9.09 kcal Atomic # 7 Polarization: -53.36 SS G_CDS: 0.08 Total: -53.28 kcal Atomic # 8 Polarization: -12.19 SS G_CDS: 0.09 Total: -12.10 kcal Atomic # 14 Polarization: 23.32 SS G_CDS: -4.14 Total: 19.18 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -33.45 -9.79 -43.24 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968364629.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.974 kcal (2) G-P(sol) polarization free energy of solvation -33.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds