Wall clock time and date at job start Tue Mar 31 2020 16:39:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50695 * 109.47412 * 2 1 4 4 C 1.38240 * 119.99652 * 90.00525 * 3 2 1 5 5 C 1.38238 * 119.99863 * 179.97438 * 4 3 2 6 6 C 1.38235 * 120.00183 * 359.97438 * 5 4 3 7 7 C 1.50693 * 120.00158 * 179.97438 * 6 5 4 8 8 C 1.50702 * 109.46939 * 90.00173 * 7 6 5 9 9 O 1.21282 * 119.99923 * 0.02562 * 8 7 6 10 10 N 1.34776 * 119.99880 * 180.27565 * 8 7 6 11 11 C 1.46501 * 119.99775 * 179.72507 * 10 8 7 12 12 H 1.08997 * 109.49681 * 324.93596 * 11 10 8 13 13 C 1.53196 * 109.49964 * 85.00125 * 11 10 8 14 14 N 1.46930 * 108.77370 * 65.31323 * 13 11 10 15 15 C 1.36935 * 120.62951 * 233.58887 * 14 13 11 16 16 H 1.07997 * 120.00121 * 152.63023 * 15 14 13 17 17 C 1.38816 * 120.00052 * 332.62759 * 15 14 13 18 18 N 1.31621 * 119.99904 * 159.34789 * 17 15 14 19 19 Si 1.86804 * 120.00024 * 339.34163 * 17 15 14 20 20 H 1.48501 * 109.46888 * 92.94931 * 19 17 15 21 21 H 1.48496 * 109.47278 * 212.94748 * 19 17 15 22 22 H 1.48496 * 109.47097 * 332.95424 * 19 17 15 23 23 C 1.46921 * 118.73878 * 53.61600 * 14 13 11 24 24 C 1.53194 * 108.77293 * 306.38579 * 23 14 13 25 25 C 1.53038 * 109.49883 * 204.83631 * 11 10 8 26 26 H 1.08996 * 109.46402 * 181.39380 * 25 11 10 27 27 C 1.53011 * 109.45840 * 61.43391 * 25 11 10 28 28 C 1.38239 * 119.99930 * 0.27847 * 6 5 4 29 29 C 1.38235 * 119.99644 * 359.51001 * 28 6 5 30 30 H 1.08994 * 109.47214 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46825 * 299.99284 * 1 2 3 32 32 H 1.08997 * 109.47413 * 59.98905 * 1 2 3 33 33 H 1.09001 * 109.46825 * 240.00716 * 2 1 3 34 34 H 1.08994 * 109.47873 * 120.00909 * 2 1 3 35 35 H 1.07994 * 120.00123 * 359.97438 * 4 3 2 36 36 H 1.08001 * 119.99779 * 179.97438 * 5 4 3 37 37 H 1.08997 * 109.47254 * 330.00304 * 7 6 5 38 38 H 1.09001 * 109.47452 * 209.99835 * 7 6 5 39 39 H 0.96997 * 120.00610 * 359.72565 * 10 8 7 40 40 H 1.08998 * 109.59077 * 185.10189 * 13 11 10 41 41 H 1.08997 * 109.58393 * 305.38736 * 13 11 10 42 42 H 0.96998 * 119.99752 * 180.02562 * 18 17 15 43 43 H 1.08997 * 109.59129 * 66.16971 * 23 14 13 44 44 H 1.09000 * 109.58809 * 186.46061 * 23 14 13 45 45 H 1.09001 * 109.49864 * 174.58482 * 24 23 14 46 46 H 1.09001 * 109.50250 * 294.65186 * 24 23 14 47 47 H 1.08995 * 109.46829 * 60.00021 * 27 25 11 48 48 H 1.09000 * 109.47043 * 180.02562 * 27 25 11 49 49 H 1.08997 * 109.46862 * 300.00253 * 27 25 11 50 50 H 1.08001 * 119.99941 * 179.72586 * 28 6 5 51 51 H 1.08001 * 120.00004 * 180.27845 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.2629 2.0723 1.1972 5 6 2.7242 3.3754 1.1973 6 6 2.9556 4.0268 0.0002 7 6 3.4580 5.4475 0.0002 8 6 4.9650 5.4474 0.0014 9 8 5.5713 4.3970 0.0016 10 7 5.6389 6.6145 0.0072 11 6 7.1039 6.6144 0.0144 12 1 7.4647 5.7720 0.6046 13 6 7.6223 6.4916 -1.4220 14 7 7.2363 7.6968 -2.1686 15 6 6.5544 7.5958 -3.3518 16 1 5.9039 8.3970 -3.6702 17 6 6.6993 6.4638 -4.1421 18 7 5.7828 6.1651 -5.0383 19 14 8.1952 5.3645 -3.9336 20 1 7.8791 4.2750 -2.9753 21 1 8.5646 4.7771 -5.2465 22 1 9.3309 6.1673 -3.4133 23 6 7.5963 9.0121 -1.6219 24 6 7.0782 9.1066 -0.1833 25 6 7.6119 7.9222 0.6257 26 1 8.7017 7.9321 0.6081 27 6 7.1247 8.0319 2.0720 28 6 2.7201 3.3770 -1.1970 29 6 2.2629 2.0725 -1.1971 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5137 0.8901 32 1 -0.3634 0.5140 -0.8898 33 1 1.8933 -0.5137 -0.8901 34 1 1.8934 -0.5139 0.8898 35 1 2.0825 1.5633 2.1325 36 1 2.9039 3.8846 2.1326 37 1 3.0941 5.9616 0.8898 38 1 3.0954 5.9612 -0.8901 39 1 5.1541 7.4546 0.0067 40 1 8.7084 6.4003 -1.4120 41 1 7.1859 5.6114 -1.8939 42 1 5.8839 5.3739 -5.5902 43 1 8.6802 9.1262 -1.6280 44 1 7.1427 9.7963 -2.2280 45 1 7.4212 10.0384 0.2665 46 1 5.9884 9.0839 -0.1867 47 1 7.5057 7.1890 2.6486 48 1 7.4860 8.9635 2.5074 49 1 6.0349 8.0214 2.0900 50 1 2.8967 3.8874 -2.1323 51 1 2.0832 1.5633 -2.1324 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000968364629.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:39:47 Heat of formation + Delta-G solvation = -26.071431 kcal Electronic energy + Delta-G solvation = -29315.195718 eV Core-core repulsion = 25599.326499 eV Total energy + Delta-G solvation = -3715.869219 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.59 seconds Orbital eigenvalues (eV) -41.34454 -40.33307 -39.08664 -36.02738 -35.50025 -34.33141 -33.29924 -32.35944 -31.81857 -31.00280 -29.16044 -28.00688 -25.63642 -24.64382 -23.87234 -23.65194 -22.81869 -22.01988 -21.18143 -20.36880 -18.75831 -18.24220 -17.34025 -17.21300 -16.83012 -16.53953 -16.02260 -15.95997 -15.71388 -15.13844 -15.11133 -15.00025 -14.76837 -14.59670 -14.55328 -14.38454 -14.17657 -13.79858 -13.73450 -13.65596 -13.16277 -12.98119 -12.93388 -12.87253 -12.54543 -12.49646 -12.43408 -12.19760 -12.06899 -11.83686 -11.71372 -11.67516 -11.66244 -11.35377 -11.12622 -10.85061 -10.76346 -9.96339 -9.80771 -9.41460 -8.88149 -8.20394 -5.47335 0.39477 0.51504 1.25135 1.29402 1.36083 1.75595 2.35618 2.37675 2.90948 3.03848 3.34649 3.70311 3.76406 3.87344 3.93714 3.95331 4.03947 4.12306 4.13721 4.20952 4.36158 4.46240 4.49790 4.51038 4.57635 4.59618 4.63674 4.67209 4.73321 4.76125 4.76841 4.88171 4.91285 5.03000 5.04741 5.07661 5.13509 5.17205 5.21141 5.21728 5.23573 5.38437 5.44025 5.50998 5.53870 5.66956 5.70189 5.71935 5.87201 6.10638 6.13498 6.69741 6.91131 7.40150 7.62446 8.03948 8.98830 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.012551 B = 0.003835 C = 0.003202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2230.396258 B = 7299.193539 C = 8742.937194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.083 4.083 3 C -0.091 4.091 4 C -0.123 4.123 5 C -0.109 4.109 6 C -0.080 4.080 7 C -0.096 4.096 8 C 0.511 3.489 9 O -0.589 6.589 10 N -0.693 5.693 11 C 0.142 3.858 12 H 0.070 0.930 13 C 0.111 3.889 14 N -0.610 5.610 15 C -0.229 4.229 16 H 0.064 0.936 17 C -0.024 4.024 18 N -0.949 5.949 19 Si 0.925 3.075 20 H -0.303 1.303 21 H -0.312 1.312 22 H -0.258 1.258 23 C 0.137 3.863 24 C -0.118 4.118 25 C -0.087 4.087 26 H 0.084 0.916 27 C -0.135 4.135 28 C -0.127 4.127 29 C -0.131 4.131 30 H 0.072 0.928 31 H 0.058 0.942 32 H 0.047 0.953 33 H 0.070 0.930 34 H 0.083 0.917 35 H 0.146 0.854 36 H 0.140 0.860 37 H 0.138 0.862 38 H 0.101 0.899 39 H 0.409 0.591 40 H 0.028 0.972 41 H 0.036 0.964 42 H 0.256 0.744 43 H 0.032 0.968 44 H 0.061 0.939 45 H 0.096 0.904 46 H 0.062 0.938 47 H 0.050 0.950 48 H 0.076 0.924 49 H 0.058 0.942 50 H 0.100 0.900 51 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.258 -1.348 18.643 20.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.120 4.120 3 C -0.091 4.091 4 C -0.140 4.140 5 C -0.127 4.127 6 C -0.081 4.081 7 C -0.135 4.135 8 C 0.298 3.702 9 O -0.469 6.469 10 N -0.344 5.344 11 C 0.035 3.965 12 H 0.088 0.912 13 C -0.015 4.015 14 N -0.335 5.335 15 C -0.359 4.359 16 H 0.082 0.918 17 C -0.219 4.219 18 N -0.596 5.596 19 Si 0.757 3.243 20 H -0.232 1.232 21 H -0.241 1.241 22 H -0.182 1.182 23 C 0.013 3.987 24 C -0.157 4.157 25 C -0.106 4.106 26 H 0.102 0.898 27 C -0.192 4.192 28 C -0.145 4.145 29 C -0.149 4.149 30 H 0.091 0.909 31 H 0.077 0.923 32 H 0.066 0.934 33 H 0.088 0.912 34 H 0.102 0.898 35 H 0.164 0.836 36 H 0.158 0.842 37 H 0.156 0.844 38 H 0.119 0.881 39 H 0.246 0.754 40 H 0.046 0.954 41 H 0.054 0.946 42 H 0.065 0.935 43 H 0.050 0.950 44 H 0.079 0.921 45 H 0.115 0.885 46 H 0.081 0.919 47 H 0.069 0.931 48 H 0.095 0.905 49 H 0.077 0.923 50 H 0.118 0.882 51 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -6.848 -2.123 18.524 19.863 hybrid contribution 0.764 -0.555 -1.252 1.568 sum -6.084 -2.677 17.272 18.507 Atomic orbital electron populations 1.21714 0.93680 1.02503 1.01976 1.20580 0.96969 0.91066 1.03406 1.20190 0.98790 0.97346 0.92748 1.21272 0.99837 0.94615 0.98300 1.21206 0.98704 0.95447 0.97317 1.19458 0.99300 0.95538 0.93770 1.20681 0.90457 0.95639 1.06717 1.20988 0.90852 0.83467 0.74843 1.90664 1.71454 1.33043 1.51787 1.45744 1.06699 1.08406 1.73585 1.21306 0.80671 0.99387 0.95156 0.91182 1.21684 0.96482 0.89922 0.93408 1.44402 1.66136 1.01472 1.21473 1.18835 1.17464 1.03782 0.95800 0.91796 1.25670 0.99497 0.99625 0.97122 1.69917 1.34618 1.27753 1.27331 0.86245 0.84100 0.79439 0.74532 1.23173 1.24131 1.18219 1.21229 0.97459 0.85762 0.94279 1.21977 1.00760 0.98264 0.94711 1.21298 1.00937 0.92419 0.95936 0.89768 1.21751 1.01540 1.02354 0.93565 1.21138 0.99736 0.96004 0.97645 1.21144 1.00693 0.94412 0.98696 0.90876 0.92289 0.93356 0.91164 0.89793 0.83582 0.84217 0.84446 0.88086 0.75388 0.95398 0.94559 0.93482 0.95004 0.92059 0.88517 0.91915 0.93119 0.90462 0.92315 0.88223 0.85779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.23 9.89 71.98 0.71 -1.52 16 2 C -0.08 -1.57 6.06 29.85 0.18 -1.39 16 3 C -0.09 -2.33 5.13 -19.87 -0.10 -2.43 16 4 C -0.12 -2.97 9.70 22.27 0.22 -2.75 16 5 C -0.11 -2.89 9.70 22.27 0.22 -2.68 16 6 C -0.08 -2.53 4.37 -19.87 -0.09 -2.62 16 7 C -0.10 -2.76 5.83 29.10 0.17 -2.59 16 8 C 0.51 18.80 7.79 87.66 0.68 19.49 16 9 O -0.59 -27.23 15.70 -3.04 -0.05 -27.28 16 10 N -0.69 -22.71 4.25 -442.16 -1.88 -24.59 16 11 C 0.14 4.89 2.24 45.07 0.10 4.99 16 12 H 0.07 2.56 7.58 -2.39 -0.02 2.54 16 13 C 0.11 4.98 3.80 86.36 0.33 5.31 16 14 N -0.61 -27.57 2.69 -699.10 -1.88 -29.45 16 15 C -0.23 -12.68 10.04 84.03 0.84 -11.84 16 16 H 0.06 3.77 8.06 -2.91 -0.02 3.75 16 17 C -0.02 -1.45 5.23 84.86 0.44 -1.00 16 18 N -0.95 -60.82 13.97 21.65 0.30 -60.52 16 19 Si 0.93 50.41 24.35 68.60 1.67 52.08 16 20 H -0.30 -17.27 6.62 99.48 0.66 -16.62 16 21 H -0.31 -17.18 7.11 99.48 0.71 -16.48 16 22 H -0.26 -13.20 6.63 99.48 0.66 -12.54 16 23 C 0.14 4.69 6.52 86.36 0.56 5.25 16 24 C -0.12 -2.91 5.19 30.67 0.16 -2.75 16 25 C -0.09 -2.17 2.48 -10.76 -0.03 -2.19 16 26 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 27 C -0.13 -2.51 9.05 71.99 0.65 -1.86 16 28 C -0.13 -4.44 9.70 22.27 0.22 -4.22 16 29 C -0.13 -4.01 9.70 22.27 0.22 -3.80 16 30 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 33 H 0.07 1.33 8.09 -2.39 -0.02 1.31 16 34 H 0.08 1.35 8.08 -2.39 -0.02 1.33 16 35 H 0.15 2.61 8.06 -2.91 -0.02 2.58 16 36 H 0.14 2.96 8.06 -2.91 -0.02 2.93 16 37 H 0.14 2.71 8.09 -2.39 -0.02 2.69 16 38 H 0.10 3.00 8.08 -2.39 -0.02 2.98 16 39 H 0.41 11.34 6.64 -92.71 -0.62 10.73 16 40 H 0.03 1.25 7.07 -2.39 -0.02 1.23 16 41 H 0.04 1.96 4.50 -2.39 -0.01 1.95 16 42 H 0.26 15.99 8.31 -92.71 -0.77 15.22 16 43 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 44 H 0.06 2.12 7.93 -2.39 -0.02 2.10 16 45 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 46 H 0.06 1.54 6.41 -2.39 -0.02 1.52 16 47 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 48 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 49 H 0.06 1.05 7.54 -2.39 -0.02 1.03 16 50 H 0.10 3.84 8.06 -2.91 -0.02 3.82 16 51 H 0.12 3.45 8.06 -2.91 -0.02 3.43 16 Total: -1.00 -77.28 397.49 3.84 -73.44 By element: Atomic # 1 Polarization: 24.73 SS G_CDS: 0.19 Total: 24.92 kcal Atomic # 6 Polarization: -14.09 SS G_CDS: 5.48 Total: -8.61 kcal Atomic # 7 Polarization: -111.10 SS G_CDS: -3.46 Total: -114.55 kcal Atomic # 8 Polarization: -27.23 SS G_CDS: -0.05 Total: -27.28 kcal Atomic # 14 Polarization: 50.41 SS G_CDS: 1.67 Total: 52.08 kcal Total: -77.28 3.84 -73.44 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968364629.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.370 kcal (2) G-P(sol) polarization free energy of solvation -77.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.59 seconds