Wall clock time and date at job start Tue Mar 31 2020 16:39:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50697 * 109.47321 * 2 1 4 4 C 1.38238 * 119.99828 * 89.99871 * 3 2 1 5 5 C 1.38240 * 119.99726 * 179.97438 * 4 3 2 6 6 C 1.38230 * 120.00101 * 359.96177 * 5 4 3 7 7 C 1.50703 * 120.00100 * 180.02562 * 6 5 4 8 8 C 1.50701 * 109.47355 * 89.99658 * 7 6 5 9 9 O 1.21286 * 119.99737 * 0.02562 * 8 7 6 10 10 N 1.34776 * 120.00049 * 180.02562 * 8 7 6 11 11 C 1.46504 * 119.99595 * 179.97438 * 10 8 7 12 12 H 1.08998 * 109.52444 * 34.91920 * 11 10 8 13 13 C 1.53192 * 109.49494 * 274.83557 * 11 10 8 14 14 N 1.46934 * 108.77196 * 185.41585 * 13 11 10 15 15 C 1.36938 * 120.63103 * 233.58856 * 14 13 11 16 16 H 1.07995 * 119.99747 * 151.85110 * 15 14 13 17 17 C 1.38807 * 119.99757 * 331.85151 * 15 14 13 18 18 N 1.31620 * 120.00231 * 343.06664 * 17 15 14 19 19 Si 1.86797 * 119.99732 * 163.07199 * 17 15 14 20 20 H 1.48499 * 109.47328 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.47463 * 119.99914 * 19 17 15 22 22 H 1.48507 * 109.47389 * 239.99734 * 19 17 15 23 23 C 1.46929 * 118.73604 * 53.61325 * 14 13 11 24 24 C 1.53199 * 108.76342 * 306.38061 * 23 14 13 25 25 C 1.53036 * 109.31110 * 54.65761 * 24 23 14 26 26 H 1.09006 * 109.45848 * 58.62866 * 25 24 23 27 27 C 1.53000 * 109.45613 * 178.60027 * 25 24 23 28 28 C 1.38237 * 119.99998 * 0.27043 * 6 5 4 29 29 C 1.38230 * 120.00019 * 269.97911 * 3 2 1 30 30 H 1.09000 * 109.47108 * 299.99981 * 1 2 3 31 31 H 1.08997 * 109.47273 * 59.99933 * 1 2 3 32 32 H 1.08998 * 109.47503 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.47108 * 240.00019 * 2 1 3 34 34 H 1.09008 * 109.47392 * 120.00546 * 2 1 3 35 35 H 1.08004 * 120.00098 * 359.97438 * 4 3 2 36 36 H 1.08001 * 119.99596 * 179.97438 * 5 4 3 37 37 H 1.08999 * 109.46534 * 329.99745 * 7 6 5 38 38 H 1.08996 * 109.46933 * 209.99883 * 7 6 5 39 39 H 0.97000 * 119.99934 * 0.02562 * 10 8 7 40 40 H 1.08999 * 109.59111 * 305.20422 * 13 11 10 41 41 H 1.09005 * 109.58679 * 65.49219 * 13 11 10 42 42 H 0.96997 * 119.99965 * 180.02562 * 18 17 15 43 43 H 1.09002 * 109.58725 * 66.17627 * 23 14 13 44 44 H 1.09002 * 109.58591 * 186.46084 * 23 14 13 45 45 H 1.08999 * 109.50795 * 294.69562 * 24 23 14 46 46 H 1.09002 * 109.48385 * 174.60118 * 24 23 14 47 47 H 1.09007 * 109.47072 * 180.02562 * 27 25 24 48 48 H 1.09002 * 109.46940 * 300.02565 * 27 25 24 49 49 H 1.08998 * 109.47271 * 60.02856 * 27 25 24 50 50 H 1.08001 * 120.00082 * 179.73095 * 28 6 5 51 51 H 1.08001 * 120.00282 * 359.97438 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2627 2.0724 1.1972 5 6 2.7241 3.3755 1.1972 6 6 2.9557 4.0267 0.0001 7 6 3.4592 5.4471 0.0000 8 6 4.9662 5.4460 0.0011 9 8 5.5718 4.3951 0.0013 10 7 5.6410 6.6126 0.0018 11 6 7.1061 6.6114 0.0034 12 1 7.4703 5.7687 -0.5842 13 6 7.6156 6.4893 1.4429 14 7 9.0791 6.6203 1.4391 15 6 9.8667 5.6642 2.0229 16 1 10.8695 5.4951 1.6596 17 6 9.3760 4.9124 3.0816 18 7 8.3123 5.3201 3.7410 19 14 10.2254 3.3222 3.5706 20 1 11.3892 3.0880 2.6784 21 1 10.6915 3.4221 4.9770 22 1 9.2704 2.1919 3.4449 23 6 9.6814 7.7969 0.7976 24 6 9.1485 7.9040 -0.6348 25 6 7.6185 7.9185 -0.6058 26 1 7.2746 8.7593 -0.0033 27 6 7.0831 8.0605 -2.0320 28 6 2.7208 3.3767 -1.1971 29 6 2.2631 2.0722 -1.1971 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3634 -1.0276 0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5139 0.8900 35 1 2.0823 1.5634 2.1325 36 1 2.9036 3.8847 2.1325 37 1 3.0957 5.9614 0.8897 38 1 3.0969 5.9610 -0.8903 39 1 5.1567 7.4530 0.0020 40 1 7.1796 7.2801 2.0533 41 1 7.3347 5.5174 1.8488 42 1 7.9697 4.7949 4.4810 43 1 9.4137 8.6943 1.3553 44 1 10.7658 7.6880 0.7791 45 1 9.4934 7.0491 -1.2163 46 1 9.5125 8.8251 -1.0901 47 1 5.9933 8.0712 -2.0116 48 1 7.4476 8.9916 -2.4658 49 1 7.4269 7.2198 -2.6346 50 1 2.8977 3.8869 -2.1324 51 1 2.0839 1.5629 -2.1324 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000968364630.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:39:51 Heat of formation + Delta-G solvation = -13.147374 kcal Electronic energy + Delta-G solvation = -28702.062740 eV Core-core repulsion = 24986.753950 eV Total energy + Delta-G solvation = -3715.308790 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -39.92714 -39.01848 -37.50218 -34.64126 -34.24141 -33.04757 -31.35438 -30.91437 -30.82198 -28.95973 -27.48344 -26.77621 -24.06402 -23.44759 -22.65572 -22.13628 -21.03565 -20.59119 -19.86608 -19.22012 -16.78785 -16.67931 -16.23550 -15.77825 -15.51770 -14.95523 -14.78671 -14.37821 -13.81702 -13.76725 -13.75000 -13.70123 -13.48543 -13.35358 -13.22111 -13.00503 -12.79244 -12.41771 -12.18500 -11.93030 -11.86686 -11.69805 -11.60729 -11.55676 -11.25982 -10.87845 -10.84024 -10.79036 -10.69026 -10.57626 -10.41672 -10.11868 -9.93721 -9.86156 -9.47113 -9.31123 -8.78389 -8.44853 -8.40665 -8.38952 -6.61918 -5.72704 -3.16037 1.40709 1.54164 3.13080 3.44070 3.52570 3.53566 3.55959 3.98141 4.57010 4.66092 4.77651 4.85157 5.01790 5.08592 5.17377 5.22647 5.26685 5.29343 5.34442 5.42252 5.42813 5.49261 5.56217 5.59423 5.63502 5.66000 5.74187 5.86689 5.93322 5.99467 6.02484 6.05546 6.13381 6.15797 6.17743 6.26582 6.41935 6.48050 6.50489 6.57436 6.68513 6.71296 6.76520 6.79130 6.98947 7.02972 7.11219 7.34014 7.76611 7.86634 8.01716 8.51401 8.75978 9.26396 9.90309 10.45170 11.35257 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.010844 B = 0.003478 C = 0.002795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2581.506504 B = 8047.561492 C =10015.098474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.085 4.085 3 C -0.088 4.088 4 C -0.116 4.116 5 C -0.099 4.099 6 C -0.063 4.063 7 C -0.103 4.103 8 C 0.509 3.491 9 O -0.524 6.524 10 N -0.721 5.721 11 C 0.125 3.875 12 H 0.080 0.920 13 C 0.167 3.833 14 N -0.589 5.589 15 C -0.255 4.255 16 H 0.066 0.934 17 C 0.007 3.993 18 N -0.899 5.899 19 Si 0.900 3.100 20 H -0.277 1.277 21 H -0.291 1.291 22 H -0.288 1.288 23 C 0.142 3.858 24 C -0.125 4.125 25 C -0.092 4.092 26 H 0.066 0.934 27 C -0.143 4.143 28 C -0.104 4.104 29 C -0.119 4.119 30 H 0.055 0.945 31 H 0.054 0.946 32 H 0.055 0.945 33 H 0.069 0.931 34 H 0.070 0.930 35 H 0.119 0.881 36 H 0.121 0.879 37 H 0.100 0.900 38 H 0.097 0.903 39 H 0.391 0.609 40 H 0.015 0.985 41 H 0.094 0.906 42 H 0.252 0.748 43 H 0.017 0.983 44 H 0.055 0.945 45 H 0.060 0.940 46 H 0.055 0.945 47 H 0.049 0.951 48 H 0.049 0.951 49 H 0.051 0.949 50 H 0.117 0.883 51 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.605 0.317 -10.437 18.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.122 4.122 3 C -0.088 4.088 4 C -0.134 4.134 5 C -0.117 4.117 6 C -0.064 4.064 7 C -0.143 4.143 8 C 0.294 3.706 9 O -0.399 6.399 10 N -0.373 5.373 11 C 0.020 3.980 12 H 0.098 0.902 13 C 0.040 3.960 14 N -0.311 5.311 15 C -0.384 4.384 16 H 0.084 0.916 17 C -0.192 4.192 18 N -0.543 5.543 19 Si 0.730 3.270 20 H -0.202 1.202 21 H -0.218 1.218 22 H -0.214 1.214 23 C 0.016 3.984 24 C -0.165 4.165 25 C -0.111 4.111 26 H 0.084 0.916 27 C -0.201 4.201 28 C -0.122 4.122 29 C -0.137 4.137 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.088 0.912 34 H 0.089 0.911 35 H 0.137 0.863 36 H 0.139 0.861 37 H 0.118 0.882 38 H 0.115 0.885 39 H 0.224 0.776 40 H 0.033 0.967 41 H 0.112 0.888 42 H 0.062 0.938 43 H 0.035 0.965 44 H 0.073 0.927 45 H 0.078 0.922 46 H 0.073 0.927 47 H 0.068 0.932 48 H 0.068 0.932 49 H 0.070 0.930 50 H 0.135 0.865 51 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -15.200 -0.546 -10.283 18.360 hybrid contribution 0.194 -0.295 0.368 0.510 sum -15.006 -0.841 -9.916 18.006 Atomic orbital electron populations 1.21740 0.94923 1.01441 1.02124 1.20527 0.95949 0.92955 1.02784 1.19831 0.99632 0.95994 0.93298 1.20951 1.00278 0.94774 0.97419 1.21006 0.98176 0.94911 0.97594 1.19266 0.98688 0.94910 0.93504 1.20697 0.93478 0.95415 1.04738 1.20357 0.89139 0.84222 0.76875 1.90771 1.70006 1.31028 1.48059 1.46066 1.07989 1.07731 1.75468 1.21948 0.77420 0.97218 1.01428 0.90165 1.21084 0.83206 1.02446 0.89241 1.43971 1.01447 1.20733 1.64986 1.19177 0.97925 1.11510 1.09834 0.91640 1.25026 0.98363 1.00138 0.95707 1.70020 1.25500 1.37607 1.21144 0.86260 0.78945 0.84009 0.77771 1.20199 1.21763 1.21442 1.20961 0.96721 0.90266 0.90483 1.22067 0.93903 1.00596 0.99945 1.21303 0.96713 0.97567 0.95539 0.91567 1.21842 1.00265 1.01035 0.96909 1.20910 0.99100 0.94910 0.97249 1.20895 1.00742 0.94771 0.97303 0.92590 0.92656 0.92614 0.91199 0.91110 0.86308 0.86084 0.88198 0.88509 0.77609 0.96661 0.88777 0.93778 0.96481 0.92651 0.92158 0.92684 0.93237 0.93219 0.93012 0.86456 0.86458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.17 9.89 37.16 0.37 -0.81 16 2 C -0.08 -0.82 6.06 -27.89 -0.17 -0.99 16 3 C -0.09 -1.08 5.13 -104.63 -0.54 -1.62 16 4 C -0.12 -1.54 9.70 -39.58 -0.38 -1.92 16 5 C -0.10 -1.42 9.70 -39.58 -0.38 -1.80 16 6 C -0.06 -0.89 4.37 -104.62 -0.46 -1.35 16 7 C -0.10 -1.28 5.83 -29.03 -0.17 -1.45 16 8 C 0.51 8.76 7.79 -10.99 -0.09 8.67 16 9 O -0.52 -11.86 15.70 5.55 0.09 -11.77 16 10 N -0.72 -11.48 4.36 -53.69 -0.23 -11.71 16 11 C 0.13 2.43 2.06 -67.81 -0.14 2.29 16 12 H 0.08 1.82 7.58 -51.93 -0.39 1.42 16 13 C 0.17 4.10 4.88 -3.71 -0.02 4.08 16 14 N -0.59 -15.11 2.99 -172.31 -0.52 -15.62 16 15 C -0.25 -7.26 9.58 -15.06 -0.14 -7.40 16 16 H 0.07 1.83 7.88 -52.49 -0.41 1.42 16 17 C 0.01 0.19 4.92 -17.43 -0.09 0.11 16 18 N -0.90 -27.07 11.19 55.49 0.62 -26.45 16 19 Si 0.90 22.89 29.59 -169.99 -5.03 17.87 16 20 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 21 H -0.29 -7.32 7.11 56.52 0.40 -6.91 16 22 H -0.29 -7.49 7.11 56.52 0.40 -7.08 16 23 C 0.14 2.97 6.52 -3.71 -0.02 2.95 16 24 C -0.13 -2.14 5.36 -26.61 -0.14 -2.28 16 25 C -0.09 -1.47 2.27 -90.58 -0.21 -1.68 16 26 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 27 C -0.14 -1.85 9.02 37.16 0.34 -1.52 16 28 C -0.10 -1.36 9.70 -39.58 -0.38 -1.75 16 29 C -0.12 -1.48 9.70 -39.58 -0.38 -1.86 16 30 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.07 0.63 8.09 -51.93 -0.42 0.21 16 34 H 0.07 0.66 8.09 -51.92 -0.42 0.24 16 35 H 0.12 1.36 8.06 -52.48 -0.42 0.94 16 36 H 0.12 1.66 8.06 -52.49 -0.42 1.23 16 37 H 0.10 1.05 8.09 -51.93 -0.42 0.63 16 38 H 0.10 0.90 8.08 -51.93 -0.42 0.48 16 39 H 0.39 4.79 8.31 -40.82 -0.34 4.45 16 40 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.09 2.74 6.07 -51.93 -0.31 2.43 16 42 H 0.25 7.37 8.31 -40.82 -0.34 7.04 16 43 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 44 H 0.05 1.14 7.93 -51.93 -0.41 0.72 16 45 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 46 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 47 H 0.05 0.57 7.36 -51.93 -0.38 0.19 16 48 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 49 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 50 H 0.12 1.33 8.06 -52.49 -0.42 0.91 16 51 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 LS Contribution 407.10 15.07 6.13 6.13 Total: -1.00 -34.30 407.10 -10.94 -45.24 By element: Atomic # 1 Polarization: 13.61 SS G_CDS: -8.99 Total: 4.62 kcal Atomic # 6 Polarization: -5.30 SS G_CDS: -3.01 Total: -8.31 kcal Atomic # 7 Polarization: -53.65 SS G_CDS: -0.13 Total: -53.78 kcal Atomic # 8 Polarization: -11.86 SS G_CDS: 0.09 Total: -11.77 kcal Atomic # 14 Polarization: 22.89 SS G_CDS: -5.03 Total: 17.87 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -34.30 -10.94 -45.24 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968364630.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.094 kcal (2) G-P(sol) polarization free energy of solvation -34.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds