Wall clock time and date at job start Tue Mar 31 2020 16:39:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50697 * 109.47321 * 2 1 4 4 C 1.38238 * 119.99828 * 89.99871 * 3 2 1 5 5 C 1.38240 * 119.99726 * 179.97438 * 4 3 2 6 6 C 1.38230 * 120.00101 * 359.96177 * 5 4 3 7 7 C 1.50703 * 120.00100 * 180.02562 * 6 5 4 8 8 C 1.50701 * 109.47355 * 89.99658 * 7 6 5 9 9 O 1.21286 * 119.99737 * 0.02562 * 8 7 6 10 10 N 1.34776 * 120.00049 * 180.02562 * 8 7 6 11 11 C 1.46504 * 119.99595 * 179.97438 * 10 8 7 12 12 H 1.08998 * 109.52444 * 34.91920 * 11 10 8 13 13 C 1.53192 * 109.49494 * 274.83557 * 11 10 8 14 14 N 1.46934 * 108.77196 * 185.41585 * 13 11 10 15 15 C 1.36938 * 120.63103 * 233.58856 * 14 13 11 16 16 H 1.07995 * 119.99747 * 151.85110 * 15 14 13 17 17 C 1.38807 * 119.99757 * 331.85151 * 15 14 13 18 18 N 1.31620 * 120.00231 * 343.06664 * 17 15 14 19 19 Si 1.86797 * 119.99732 * 163.07199 * 17 15 14 20 20 H 1.48499 * 109.47328 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.47463 * 119.99914 * 19 17 15 22 22 H 1.48507 * 109.47389 * 239.99734 * 19 17 15 23 23 C 1.46929 * 118.73604 * 53.61325 * 14 13 11 24 24 C 1.53199 * 108.76342 * 306.38061 * 23 14 13 25 25 C 1.53036 * 109.31110 * 54.65761 * 24 23 14 26 26 H 1.09006 * 109.45848 * 58.62866 * 25 24 23 27 27 C 1.53000 * 109.45613 * 178.60027 * 25 24 23 28 28 C 1.38237 * 119.99998 * 0.27043 * 6 5 4 29 29 C 1.38230 * 120.00019 * 269.97911 * 3 2 1 30 30 H 1.09000 * 109.47108 * 299.99981 * 1 2 3 31 31 H 1.08997 * 109.47273 * 59.99933 * 1 2 3 32 32 H 1.08998 * 109.47503 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.47108 * 240.00019 * 2 1 3 34 34 H 1.09008 * 109.47392 * 120.00546 * 2 1 3 35 35 H 1.08004 * 120.00098 * 359.97438 * 4 3 2 36 36 H 1.08001 * 119.99596 * 179.97438 * 5 4 3 37 37 H 1.08999 * 109.46534 * 329.99745 * 7 6 5 38 38 H 1.08996 * 109.46933 * 209.99883 * 7 6 5 39 39 H 0.97000 * 119.99934 * 0.02562 * 10 8 7 40 40 H 1.08999 * 109.59111 * 305.20422 * 13 11 10 41 41 H 1.09005 * 109.58679 * 65.49219 * 13 11 10 42 42 H 0.96997 * 119.99965 * 180.02562 * 18 17 15 43 43 H 1.09002 * 109.58725 * 66.17627 * 23 14 13 44 44 H 1.09002 * 109.58591 * 186.46084 * 23 14 13 45 45 H 1.08999 * 109.50795 * 294.69562 * 24 23 14 46 46 H 1.09002 * 109.48385 * 174.60118 * 24 23 14 47 47 H 1.09007 * 109.47072 * 180.02562 * 27 25 24 48 48 H 1.09002 * 109.46940 * 300.02565 * 27 25 24 49 49 H 1.08998 * 109.47271 * 60.02856 * 27 25 24 50 50 H 1.08001 * 120.00082 * 179.73095 * 28 6 5 51 51 H 1.08001 * 120.00282 * 359.97438 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2627 2.0724 1.1972 5 6 2.7241 3.3755 1.1972 6 6 2.9557 4.0267 0.0001 7 6 3.4592 5.4471 0.0000 8 6 4.9662 5.4460 0.0011 9 8 5.5718 4.3951 0.0013 10 7 5.6410 6.6126 0.0018 11 6 7.1061 6.6114 0.0034 12 1 7.4703 5.7687 -0.5842 13 6 7.6156 6.4893 1.4429 14 7 9.0791 6.6203 1.4391 15 6 9.8667 5.6642 2.0229 16 1 10.8695 5.4951 1.6596 17 6 9.3760 4.9124 3.0816 18 7 8.3123 5.3201 3.7410 19 14 10.2254 3.3222 3.5706 20 1 11.3892 3.0880 2.6784 21 1 10.6915 3.4221 4.9770 22 1 9.2704 2.1919 3.4449 23 6 9.6814 7.7969 0.7976 24 6 9.1485 7.9040 -0.6348 25 6 7.6185 7.9185 -0.6058 26 1 7.2746 8.7593 -0.0033 27 6 7.0831 8.0605 -2.0320 28 6 2.7208 3.3767 -1.1971 29 6 2.2631 2.0722 -1.1971 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3634 -1.0276 0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5139 0.8900 35 1 2.0823 1.5634 2.1325 36 1 2.9036 3.8847 2.1325 37 1 3.0957 5.9614 0.8897 38 1 3.0969 5.9610 -0.8903 39 1 5.1567 7.4530 0.0020 40 1 7.1796 7.2801 2.0533 41 1 7.3347 5.5174 1.8488 42 1 7.9697 4.7949 4.4810 43 1 9.4137 8.6943 1.3553 44 1 10.7658 7.6880 0.7791 45 1 9.4934 7.0491 -1.2163 46 1 9.5125 8.8251 -1.0901 47 1 5.9933 8.0712 -2.0116 48 1 7.4476 8.9916 -2.4658 49 1 7.4269 7.2198 -2.6346 50 1 2.8977 3.8869 -2.1324 51 1 2.0839 1.5629 -2.1324 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000968364630.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:39:51 Heat of formation + Delta-G solvation = -33.001373 kcal Electronic energy + Delta-G solvation = -28702.923674 eV Core-core repulsion = 24986.753950 eV Total energy + Delta-G solvation = -3716.169724 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.20925 -40.21041 -39.03125 -36.08659 -35.49512 -34.64350 -32.85730 -32.29360 -31.80864 -30.48274 -29.02754 -27.95162 -25.88434 -24.50782 -23.65020 -23.52263 -22.65468 -21.69615 -21.29273 -20.68932 -18.78399 -17.98557 -17.46225 -16.96023 -16.78834 -16.55645 -15.97223 -15.80046 -15.56819 -15.26972 -15.00503 -14.93820 -14.61124 -14.55555 -14.40655 -14.18524 -14.09644 -13.72932 -13.57516 -13.29981 -13.06135 -12.93027 -12.91654 -12.77757 -12.58616 -12.53889 -12.31924 -12.15284 -12.06061 -11.91740 -11.71648 -11.66354 -11.62775 -11.43810 -11.19078 -10.78637 -10.57748 -10.00366 -9.79401 -9.40476 -8.70124 -7.91567 -5.37281 0.40223 0.52824 1.36811 1.41816 1.49954 1.77520 2.28963 2.47047 2.91018 3.25050 3.69831 3.73900 3.84490 3.88384 3.94228 4.00595 4.12496 4.14311 4.21086 4.23556 4.46344 4.49753 4.50785 4.57649 4.60598 4.61873 4.68371 4.73383 4.74012 4.77454 4.93064 4.99211 5.04400 5.07205 5.12251 5.17431 5.18872 5.22450 5.23240 5.31432 5.37611 5.47102 5.50751 5.52006 5.54092 5.60601 5.69239 5.72757 5.81299 6.14382 6.34663 6.72503 7.10201 7.45197 7.83566 8.32258 9.12962 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.010844 B = 0.003478 C = 0.002795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2581.506504 B = 8047.561492 C =10015.098474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.085 4.085 3 C -0.093 4.093 4 C -0.133 4.133 5 C -0.123 4.123 6 C -0.083 4.083 7 C -0.091 4.091 8 C 0.505 3.495 9 O -0.585 6.585 10 N -0.708 5.708 11 C 0.142 3.858 12 H 0.044 0.956 13 C 0.179 3.821 14 N -0.610 5.610 15 C -0.263 4.263 16 H 0.066 0.934 17 C -0.050 4.050 18 N -0.929 5.929 19 Si 0.958 3.042 20 H -0.263 1.263 21 H -0.284 1.284 22 H -0.300 1.300 23 C 0.135 3.865 24 C -0.116 4.116 25 C -0.085 4.085 26 H 0.080 0.920 27 C -0.134 4.134 28 C -0.113 4.113 29 C -0.127 4.127 30 H 0.051 0.949 31 H 0.057 0.943 32 H 0.071 0.929 33 H 0.079 0.921 34 H 0.070 0.930 35 H 0.128 0.872 36 H 0.115 0.885 37 H 0.120 0.880 38 H 0.138 0.862 39 H 0.414 0.586 40 H -0.001 1.001 41 H 0.040 0.960 42 H 0.246 0.754 43 H 0.022 0.978 44 H 0.054 0.946 45 H 0.047 0.953 46 H 0.096 0.904 47 H 0.067 0.933 48 H 0.076 0.924 49 H 0.040 0.960 50 H 0.136 0.864 51 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.641 1.582 -12.800 21.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.122 4.122 3 C -0.093 4.093 4 C -0.151 4.151 5 C -0.141 4.141 6 C -0.083 4.083 7 C -0.130 4.130 8 C 0.292 3.708 9 O -0.465 6.465 10 N -0.360 5.360 11 C 0.036 3.964 12 H 0.062 0.938 13 C 0.052 3.948 14 N -0.334 5.334 15 C -0.393 4.393 16 H 0.084 0.916 17 C -0.245 4.245 18 N -0.574 5.574 19 Si 0.787 3.213 20 H -0.187 1.187 21 H -0.210 1.210 22 H -0.228 1.228 23 C 0.010 3.990 24 C -0.156 4.156 25 C -0.104 4.104 26 H 0.098 0.902 27 C -0.191 4.191 28 C -0.131 4.131 29 C -0.145 4.145 30 H 0.070 0.930 31 H 0.076 0.924 32 H 0.090 0.910 33 H 0.097 0.903 34 H 0.089 0.911 35 H 0.146 0.854 36 H 0.133 0.867 37 H 0.138 0.862 38 H 0.156 0.844 39 H 0.251 0.749 40 H 0.017 0.983 41 H 0.059 0.941 42 H 0.055 0.945 43 H 0.040 0.960 44 H 0.072 0.928 45 H 0.066 0.934 46 H 0.114 0.886 47 H 0.086 0.914 48 H 0.095 0.905 49 H 0.059 0.941 50 H 0.154 0.846 51 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -16.247 0.787 -12.674 20.621 hybrid contribution 0.540 -0.682 1.115 1.414 sum -15.707 0.105 -11.559 19.502 Atomic orbital electron populations 1.21704 0.93538 1.02466 1.02044 1.20586 0.97091 0.91285 1.03246 1.20188 0.98900 0.97235 0.92983 1.21190 1.00634 0.94746 0.98502 1.21191 0.99301 0.95766 0.97887 1.19509 0.99230 0.95909 0.93698 1.20719 0.89255 0.95422 1.07631 1.21265 0.91146 0.83327 0.75034 1.90747 1.71677 1.33262 1.50791 1.45875 1.06651 1.08804 1.74648 1.21408 0.79422 0.98273 0.97345 0.93765 1.20789 0.83140 0.98739 0.92100 1.44256 1.01784 1.22041 1.65320 1.19506 0.98218 1.12197 1.09402 0.91592 1.25763 0.99416 1.03055 0.96299 1.70166 1.27035 1.38557 1.21690 0.85335 0.78066 0.80031 0.77888 1.18736 1.21007 1.22756 1.21182 0.96737 0.88454 0.92590 1.21969 0.94627 1.02103 0.96860 1.21267 0.95963 0.95368 0.97824 0.90191 1.21760 1.01379 1.01960 0.93997 1.21226 0.98772 0.95430 0.97674 1.21253 1.00176 0.94795 0.98282 0.93011 0.92400 0.91029 0.90287 0.91108 0.85430 0.86663 0.86188 0.84419 0.74944 0.98332 0.94100 0.94464 0.96015 0.92763 0.93383 0.88584 0.91424 0.90488 0.94096 0.84649 0.84201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.06 9.89 71.98 0.71 -1.35 16 2 C -0.08 -1.56 6.06 29.85 0.18 -1.37 16 3 C -0.09 -2.26 5.13 -19.87 -0.10 -2.37 16 4 C -0.13 -3.61 9.70 22.27 0.22 -3.39 16 5 C -0.12 -3.66 9.70 22.27 0.22 -3.44 16 6 C -0.08 -2.31 4.37 -19.87 -0.09 -2.39 16 7 C -0.09 -2.12 5.83 29.10 0.17 -1.95 16 8 C 0.50 17.38 7.79 87.66 0.68 18.07 16 9 O -0.59 -27.68 15.70 -3.05 -0.05 -27.73 16 10 N -0.71 -21.94 4.36 -442.15 -1.93 -23.87 16 11 C 0.14 5.55 2.06 45.07 0.09 5.64 16 12 H 0.04 2.07 7.58 -2.39 -0.02 2.05 16 13 C 0.18 9.15 4.88 86.36 0.42 9.57 16 14 N -0.61 -32.15 2.99 -699.05 -2.09 -34.24 16 15 C -0.26 -15.42 9.58 84.03 0.81 -14.61 16 16 H 0.07 3.77 7.88 -2.91 -0.02 3.74 16 17 C -0.05 -2.99 4.92 84.86 0.42 -2.57 16 18 N -0.93 -58.59 11.19 21.65 0.24 -58.35 16 19 Si 0.96 48.71 29.59 68.60 2.03 50.74 16 20 H -0.26 -12.62 7.11 99.48 0.71 -11.92 16 21 H -0.28 -13.96 7.11 99.48 0.71 -13.25 16 22 H -0.30 -15.73 7.11 99.48 0.71 -15.02 16 23 C 0.14 5.59 6.52 86.36 0.56 6.15 16 24 C -0.12 -3.70 5.36 30.67 0.16 -3.54 16 25 C -0.09 -2.51 2.27 -10.77 -0.02 -2.54 16 26 H 0.08 2.20 8.14 -2.38 -0.02 2.18 16 27 C -0.13 -2.93 9.02 71.98 0.65 -2.28 16 28 C -0.11 -2.86 9.70 22.27 0.22 -2.64 16 29 C -0.13 -3.02 9.70 22.27 0.22 -2.81 16 30 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.08 1.30 8.09 -2.39 -0.02 1.28 16 34 H 0.07 1.29 8.09 -2.38 -0.02 1.27 16 35 H 0.13 3.05 8.06 -2.91 -0.02 3.03 16 36 H 0.12 3.37 8.06 -2.91 -0.02 3.35 16 37 H 0.12 2.32 8.09 -2.39 -0.02 2.31 16 38 H 0.14 2.07 8.08 -2.39 -0.02 2.05 16 39 H 0.41 9.07 8.31 -92.71 -0.77 8.29 16 40 H 0.00 -0.07 8.14 -2.39 -0.02 -0.09 16 41 H 0.04 2.52 6.07 -2.38 -0.01 2.51 16 42 H 0.25 15.14 8.31 -92.71 -0.77 14.37 16 43 H 0.02 0.88 8.14 -2.39 -0.02 0.87 16 44 H 0.05 2.20 7.93 -2.39 -0.02 2.19 16 45 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 46 H 0.10 2.33 8.14 -2.39 -0.02 2.31 16 47 H 0.07 1.25 7.36 -2.38 -0.02 1.23 16 48 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 49 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 50 H 0.14 2.81 8.06 -2.91 -0.02 2.78 16 51 H 0.14 2.58 8.06 -2.91 -0.02 2.55 16 Total: -1.00 -80.71 407.10 3.83 -76.87 By element: Atomic # 1 Polarization: 24.28 SS G_CDS: 0.12 Total: 24.40 kcal Atomic # 6 Polarization: -13.34 SS G_CDS: 5.51 Total: -7.83 kcal Atomic # 7 Polarization: -112.68 SS G_CDS: -3.78 Total: -116.46 kcal Atomic # 8 Polarization: -27.68 SS G_CDS: -0.05 Total: -27.73 kcal Atomic # 14 Polarization: 48.71 SS G_CDS: 2.03 Total: 50.74 kcal Total: -80.71 3.83 -76.87 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968364630.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.871 kcal (2) G-P(sol) polarization free energy of solvation -80.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds