Wall clock time and date at job start Tue Mar 31 2020 16:39:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50706 * 109.46939 * 2 1 4 4 C 1.38232 * 119.99826 * 90.00188 * 3 2 1 5 5 C 1.38235 * 119.99890 * 180.02562 * 4 3 2 6 6 C 1.38237 * 119.99782 * 0.02562 * 5 4 3 7 7 C 1.50699 * 119.99830 * 179.97438 * 6 5 4 8 8 C 1.50701 * 109.47450 * 89.99664 * 7 6 5 9 9 O 1.21281 * 120.00040 * 359.97438 * 8 7 6 10 10 N 1.34779 * 120.00100 * 179.97438 * 8 7 6 11 11 C 1.46502 * 119.99832 * 179.97438 * 10 8 7 12 12 H 1.08996 * 109.50136 * 325.07172 * 11 10 8 13 13 C 1.53626 * 109.45417 * 85.27810 * 11 10 8 14 14 N 1.46921 * 108.54492 * 174.74061 * 13 11 10 15 15 C 1.36928 * 120.63487 * 126.36602 * 14 13 11 16 16 H 1.08002 * 120.00095 * 333.17616 * 15 14 13 17 17 C 1.38813 * 120.00321 * 153.17968 * 15 14 13 18 18 N 1.31623 * 119.99903 * 334.06765 * 17 15 14 19 19 Si 1.86804 * 120.00151 * 154.07324 * 17 15 14 20 20 H 1.48502 * 109.47036 * 179.97438 * 19 17 15 21 21 H 1.48492 * 109.46770 * 299.99638 * 19 17 15 22 22 H 1.48498 * 109.47068 * 60.00171 * 19 17 15 23 23 C 1.46932 * 118.73572 * 306.09089 * 14 13 11 24 24 C 1.53193 * 108.77428 * 53.86298 * 23 14 13 25 25 C 1.53035 * 109.49847 * 204.99955 * 11 10 8 26 26 H 1.08998 * 109.45256 * 298.67238 * 25 11 10 27 27 C 1.53009 * 109.45758 * 58.63496 * 25 11 10 28 28 C 1.38234 * 120.00386 * 0.25163 * 6 5 4 29 29 C 1.38232 * 120.00002 * 269.97805 * 3 2 1 30 30 H 1.08998 * 109.47436 * 60.00345 * 1 2 3 31 31 H 1.09011 * 109.46936 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47071 * 299.99699 * 1 2 3 33 33 H 1.09001 * 109.47071 * 240.00301 * 2 1 3 34 34 H 1.08996 * 109.47274 * 120.00166 * 2 1 3 35 35 H 1.07995 * 120.00459 * 359.97438 * 4 3 2 36 36 H 1.08002 * 120.00078 * 179.97438 * 5 4 3 37 37 H 1.09001 * 109.47247 * 329.99333 * 7 6 5 38 38 H 1.09001 * 109.47035 * 210.00095 * 7 6 5 39 39 H 0.97002 * 119.99766 * 0.02562 * 10 8 7 40 40 H 1.09001 * 109.74347 * 54.99819 * 13 11 10 41 41 H 1.09007 * 109.66395 * 294.43619 * 13 11 10 42 42 H 0.97001 * 119.99894 * 354.37781 * 18 17 15 43 43 H 1.09000 * 109.58315 * 173.64234 * 23 14 13 44 44 H 1.08998 * 109.58791 * 293.93286 * 23 14 13 45 45 H 1.08999 * 109.50219 * 65.31386 * 24 23 14 46 46 H 1.09000 * 109.49473 * 185.41253 * 24 23 14 47 47 H 1.09004 * 109.47088 * 180.02562 * 27 25 11 48 48 H 1.08994 * 109.47036 * 300.07004 * 27 25 11 49 49 H 1.08997 * 109.46742 * 60.06611 * 27 25 11 50 50 H 1.07994 * 120.00417 * 179.73305 * 28 6 5 51 51 H 1.08002 * 119.99983 * 0.02562 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2627 2.0725 1.1971 5 6 2.7229 3.3760 1.1972 6 6 2.9522 4.0280 0.0000 7 6 3.4534 5.4492 0.0000 8 6 4.9604 5.4505 -0.0006 9 8 5.5677 4.4007 -0.0005 10 7 5.6333 6.6183 -0.0012 11 6 7.0983 6.6195 -0.0013 12 1 7.4629 5.7777 0.5874 13 6 7.6101 6.4999 -1.4448 14 7 9.0735 6.6301 -1.4341 15 6 9.8632 5.6748 -2.0160 16 1 9.5096 4.6575 -2.0967 17 6 11.1185 6.0137 -2.5022 18 7 11.3657 7.2497 -2.8812 19 14 12.4568 4.7157 -2.6188 20 1 13.6940 5.3281 -3.1660 21 1 12.7321 4.1659 -1.2671 22 1 12.0079 3.6212 -3.5164 23 6 9.6732 7.8080 -0.7925 24 6 9.1381 7.9157 0.6389 25 6 7.6081 7.9276 0.6077 26 1 7.2637 8.7674 0.0042 27 6 7.0702 8.0699 2.0331 28 6 2.7164 3.3783 -1.1972 29 6 2.2631 2.0724 -1.1971 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0278 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8899 35 1 2.0823 1.5635 2.1324 36 1 2.9025 3.8852 2.1325 37 1 3.0900 5.9626 0.8902 38 1 3.0892 5.9628 -0.8898 39 1 5.1476 7.4579 -0.0009 40 1 7.1772 7.2920 -2.0558 41 1 7.3326 5.5279 -1.8530 42 1 10.6500 7.9042 -2.8980 43 1 10.7575 7.6994 -0.7700 44 1 9.4072 8.7044 -1.3527 45 1 9.4834 7.0618 1.2217 46 1 9.5000 8.8376 1.0941 47 1 7.4328 9.0019 2.4669 48 1 5.9806 8.0784 2.0111 49 1 7.4149 7.2305 2.6369 50 1 2.8914 3.8891 -2.1324 51 1 2.0830 1.5633 -2.1324 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000968364632.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:39:58 Heat of formation + Delta-G solvation = -15.883578 kcal Electronic energy + Delta-G solvation = -28336.524550 eV Core-core repulsion = 24621.097109 eV Total energy + Delta-G solvation = -3715.427441 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.13768 -39.20748 -37.71727 -34.85024 -34.57049 -33.07991 -31.49647 -30.98846 -30.97220 -29.16464 -27.57598 -26.67458 -23.98057 -23.57979 -22.80659 -22.32764 -21.09419 -20.73501 -20.09159 -19.31386 -17.37683 -16.87252 -16.43347 -15.95206 -15.69626 -15.09133 -14.81656 -14.18249 -14.06158 -13.96994 -13.94331 -13.76722 -13.65527 -13.46979 -13.35413 -13.22424 -12.94654 -12.52628 -12.45917 -12.14283 -12.08478 -11.83266 -11.77209 -11.50240 -11.37616 -10.98196 -10.94116 -10.92042 -10.67612 -10.62993 -10.35385 -10.01949 -9.97873 -9.92396 -9.56180 -9.31000 -8.93576 -8.84427 -8.55987 -8.26098 -6.86448 -6.04249 -3.18006 1.25430 1.39144 2.86727 3.33264 3.54643 3.57454 3.75405 3.80315 4.51518 4.64338 4.64779 4.69560 4.87880 4.94303 4.98640 5.10609 5.12424 5.18228 5.20399 5.30628 5.31381 5.32255 5.37415 5.44106 5.52433 5.57711 5.64619 5.73547 5.82169 5.88533 5.89519 5.96440 6.00808 6.02886 6.06493 6.12863 6.19731 6.35407 6.43715 6.47455 6.54100 6.55316 6.62717 6.63361 6.72556 6.92240 6.96239 7.08218 7.20207 7.75298 8.06504 8.48895 8.61240 9.14234 9.88449 10.30466 11.24656 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.013418 B = 0.002744 C = 0.002398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2086.190572 B =10203.399596 C =11672.866098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.085 4.085 3 C -0.086 4.086 4 C -0.118 4.118 5 C -0.103 4.103 6 C -0.066 4.066 7 C -0.103 4.103 8 C 0.509 3.491 9 O -0.526 6.526 10 N -0.724 5.724 11 C 0.134 3.866 12 H 0.086 0.914 13 C 0.145 3.855 14 N -0.595 5.595 15 C -0.346 4.346 16 H 0.057 0.943 17 C -0.025 4.025 18 N -0.917 5.917 19 Si 1.063 2.937 20 H -0.286 1.286 21 H -0.293 1.293 22 H -0.293 1.293 23 C 0.146 3.854 24 C -0.128 4.128 25 C -0.091 4.091 26 H 0.066 0.934 27 C -0.143 4.143 28 C -0.101 4.101 29 C -0.116 4.116 30 H 0.055 0.945 31 H 0.056 0.944 32 H 0.055 0.945 33 H 0.071 0.929 34 H 0.070 0.930 35 H 0.119 0.881 36 H 0.118 0.882 37 H 0.099 0.901 38 H 0.100 0.900 39 H 0.394 0.606 40 H 0.014 0.986 41 H 0.058 0.942 42 H 0.268 0.732 43 H 0.082 0.918 44 H 0.017 0.983 45 H 0.060 0.940 46 H 0.056 0.944 47 H 0.051 0.949 48 H 0.048 0.952 49 H 0.052 0.948 50 H 0.120 0.880 51 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.025 -3.605 9.023 24.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.123 4.123 3 C -0.086 4.086 4 C -0.136 4.136 5 C -0.121 4.121 6 C -0.066 4.066 7 C -0.143 4.143 8 C 0.294 3.706 9 O -0.401 6.401 10 N -0.375 5.375 11 C 0.029 3.971 12 H 0.104 0.896 13 C 0.017 3.983 14 N -0.318 5.318 15 C -0.475 4.475 16 H 0.075 0.925 17 C -0.226 4.226 18 N -0.557 5.557 19 Si 0.893 3.107 20 H -0.211 1.211 21 H -0.220 1.220 22 H -0.220 1.220 23 C 0.020 3.980 24 C -0.168 4.168 25 C -0.110 4.110 26 H 0.084 0.916 27 C -0.200 4.200 28 C -0.119 4.119 29 C -0.134 4.134 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.137 0.863 36 H 0.136 0.864 37 H 0.117 0.883 38 H 0.118 0.882 39 H 0.227 0.773 40 H 0.032 0.968 41 H 0.077 0.923 42 H 0.078 0.922 43 H 0.101 0.899 44 H 0.035 0.965 45 H 0.079 0.921 46 H 0.075 0.925 47 H 0.071 0.929 48 H 0.067 0.933 49 H 0.071 0.929 50 H 0.138 0.862 51 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -19.943 -4.663 8.618 22.220 hybrid contribution -1.867 0.750 0.349 2.042 sum -21.810 -3.913 8.966 23.904 Atomic orbital electron populations 1.21744 0.94847 1.01543 1.02137 1.20538 0.96017 0.92857 1.02861 1.19855 0.99385 0.96070 0.93267 1.20924 1.00496 0.94764 0.97409 1.20927 0.98933 0.94925 0.97289 1.19252 0.98987 0.94813 0.93569 1.20693 0.93144 0.95550 1.04911 1.20441 0.89326 0.84108 0.76692 1.90766 1.69983 1.31164 1.48205 1.46125 1.07959 1.07940 1.75469 1.21785 0.77314 0.98229 0.99813 0.89617 1.21262 0.85691 0.99245 0.92092 1.44076 0.99469 1.24254 1.64041 1.20008 1.00768 0.89614 1.37122 0.92516 1.25815 0.99647 1.01052 0.96092 1.70796 1.36936 1.04796 1.43166 0.83555 0.76353 0.74642 0.76191 1.21120 1.22028 1.21973 1.21019 0.99233 0.88855 0.88870 1.22120 0.93227 1.00825 1.00583 1.21297 0.97217 0.96819 0.95689 0.91560 1.21837 1.00088 1.01366 0.96755 1.20973 0.98589 0.94910 0.97432 1.20952 1.00300 0.94715 0.97471 0.92585 0.92526 0.92633 0.91060 0.91121 0.86335 0.86384 0.88309 0.88159 0.77322 0.96775 0.92301 0.92169 0.89938 0.96528 0.92077 0.92534 0.92942 0.93278 0.92902 0.86209 0.86245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 9.89 37.16 0.37 -0.65 16 2 C -0.09 -0.72 6.06 -27.88 -0.17 -0.89 16 3 C -0.09 -0.93 5.13 -104.62 -0.54 -1.47 16 4 C -0.12 -1.30 9.70 -39.58 -0.38 -1.69 16 5 C -0.10 -1.20 9.70 -39.58 -0.38 -1.59 16 6 C -0.07 -0.80 4.37 -104.62 -0.46 -1.26 16 7 C -0.10 -1.08 5.83 -29.04 -0.17 -1.25 16 8 C 0.51 7.61 7.79 -10.98 -0.09 7.52 16 9 O -0.53 -10.60 15.70 5.56 0.09 -10.51 16 10 N -0.72 -10.04 4.37 -53.47 -0.23 -10.28 16 11 C 0.13 2.40 2.08 -67.59 -0.14 2.26 16 12 H 0.09 1.82 7.58 -51.93 -0.39 1.42 16 13 C 0.14 3.20 6.12 -3.49 -0.02 3.17 16 14 N -0.59 -15.25 2.86 -172.05 -0.49 -15.74 16 15 C -0.35 -10.02 9.49 -15.06 -0.14 -10.17 16 16 H 0.06 1.70 7.95 -52.49 -0.42 1.28 16 17 C -0.02 -0.71 4.67 -17.43 -0.08 -0.79 16 18 N -0.92 -27.69 12.38 55.49 0.69 -27.00 16 19 Si 1.06 26.01 29.99 -169.99 -5.10 20.91 16 20 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 21 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 22 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 23 C 0.15 3.40 4.70 -3.71 -0.02 3.38 16 24 C -0.13 -2.36 5.36 -26.61 -0.14 -2.50 16 25 C -0.09 -1.43 2.27 -90.58 -0.21 -1.64 16 26 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 27 C -0.14 -1.82 9.02 37.16 0.34 -1.48 16 28 C -0.10 -1.23 9.70 -39.58 -0.38 -1.62 16 29 C -0.12 -1.33 9.70 -39.58 -0.38 -1.71 16 30 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.06 0.33 8.14 -51.92 -0.42 -0.09 16 32 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 33 H 0.07 0.57 8.09 -51.93 -0.42 0.15 16 34 H 0.07 0.55 8.09 -51.93 -0.42 0.13 16 35 H 0.12 1.07 8.06 -52.49 -0.42 0.64 16 36 H 0.12 1.20 8.06 -52.49 -0.42 0.77 16 37 H 0.10 0.77 8.09 -51.93 -0.42 0.35 16 38 H 0.10 0.84 8.08 -51.93 -0.42 0.42 16 39 H 0.39 4.09 8.31 -40.82 -0.34 3.75 16 40 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 41 H 0.06 1.43 7.93 -51.93 -0.41 1.02 16 42 H 0.27 8.11 6.74 -40.82 -0.28 7.84 16 43 H 0.08 2.17 6.24 -51.93 -0.32 1.84 16 44 H 0.02 0.39 7.88 -51.93 -0.41 -0.02 16 45 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 46 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 47 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 48 H 0.05 0.53 7.35 -51.93 -0.38 0.15 16 49 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 50 H 0.12 1.33 8.06 -52.49 -0.42 0.91 16 51 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 LS Contribution 406.04 15.07 6.12 6.12 Total: -1.00 -34.27 406.04 -10.86 -45.12 By element: Atomic # 1 Polarization: 12.66 SS G_CDS: -8.92 Total: 3.74 kcal Atomic # 6 Polarization: -9.36 SS G_CDS: -3.00 Total: -12.36 kcal Atomic # 7 Polarization: -52.98 SS G_CDS: -0.04 Total: -53.02 kcal Atomic # 8 Polarization: -10.60 SS G_CDS: 0.09 Total: -10.51 kcal Atomic # 14 Polarization: 26.01 SS G_CDS: -5.10 Total: 20.91 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -34.27 -10.86 -45.12 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968364632.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.239 kcal (2) G-P(sol) polarization free energy of solvation -34.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds