Wall clock time and date at job start Tue Mar 31 2020 16:39:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50706 * 109.46939 * 2 1 4 4 C 1.38232 * 119.99826 * 90.00188 * 3 2 1 5 5 C 1.38235 * 119.99890 * 180.02562 * 4 3 2 6 6 C 1.38237 * 119.99782 * 0.02562 * 5 4 3 7 7 C 1.50699 * 119.99830 * 179.97438 * 6 5 4 8 8 C 1.50701 * 109.47450 * 89.99664 * 7 6 5 9 9 O 1.21281 * 120.00040 * 359.97438 * 8 7 6 10 10 N 1.34779 * 120.00100 * 179.97438 * 8 7 6 11 11 C 1.46502 * 119.99832 * 179.97438 * 10 8 7 12 12 H 1.08996 * 109.50136 * 325.07172 * 11 10 8 13 13 C 1.53626 * 109.45417 * 85.27810 * 11 10 8 14 14 N 1.46921 * 108.54492 * 174.74061 * 13 11 10 15 15 C 1.36928 * 120.63487 * 126.36602 * 14 13 11 16 16 H 1.08002 * 120.00095 * 333.17616 * 15 14 13 17 17 C 1.38813 * 120.00321 * 153.17968 * 15 14 13 18 18 N 1.31623 * 119.99903 * 334.06765 * 17 15 14 19 19 Si 1.86804 * 120.00151 * 154.07324 * 17 15 14 20 20 H 1.48502 * 109.47036 * 179.97438 * 19 17 15 21 21 H 1.48492 * 109.46770 * 299.99638 * 19 17 15 22 22 H 1.48498 * 109.47068 * 60.00171 * 19 17 15 23 23 C 1.46932 * 118.73572 * 306.09089 * 14 13 11 24 24 C 1.53193 * 108.77428 * 53.86298 * 23 14 13 25 25 C 1.53035 * 109.49847 * 204.99955 * 11 10 8 26 26 H 1.08998 * 109.45256 * 298.67238 * 25 11 10 27 27 C 1.53009 * 109.45758 * 58.63496 * 25 11 10 28 28 C 1.38234 * 120.00386 * 0.25163 * 6 5 4 29 29 C 1.38232 * 120.00002 * 269.97805 * 3 2 1 30 30 H 1.08998 * 109.47436 * 60.00345 * 1 2 3 31 31 H 1.09011 * 109.46936 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47071 * 299.99699 * 1 2 3 33 33 H 1.09001 * 109.47071 * 240.00301 * 2 1 3 34 34 H 1.08996 * 109.47274 * 120.00166 * 2 1 3 35 35 H 1.07995 * 120.00459 * 359.97438 * 4 3 2 36 36 H 1.08002 * 120.00078 * 179.97438 * 5 4 3 37 37 H 1.09001 * 109.47247 * 329.99333 * 7 6 5 38 38 H 1.09001 * 109.47035 * 210.00095 * 7 6 5 39 39 H 0.97002 * 119.99766 * 0.02562 * 10 8 7 40 40 H 1.09001 * 109.74347 * 54.99819 * 13 11 10 41 41 H 1.09007 * 109.66395 * 294.43619 * 13 11 10 42 42 H 0.97001 * 119.99894 * 354.37781 * 18 17 15 43 43 H 1.09000 * 109.58315 * 173.64234 * 23 14 13 44 44 H 1.08998 * 109.58791 * 293.93286 * 23 14 13 45 45 H 1.08999 * 109.50219 * 65.31386 * 24 23 14 46 46 H 1.09000 * 109.49473 * 185.41253 * 24 23 14 47 47 H 1.09004 * 109.47088 * 180.02562 * 27 25 11 48 48 H 1.08994 * 109.47036 * 300.07004 * 27 25 11 49 49 H 1.08997 * 109.46742 * 60.06611 * 27 25 11 50 50 H 1.07994 * 120.00417 * 179.73305 * 28 6 5 51 51 H 1.08002 * 119.99983 * 0.02562 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2627 2.0725 1.1971 5 6 2.7229 3.3760 1.1972 6 6 2.9522 4.0280 0.0000 7 6 3.4534 5.4492 0.0000 8 6 4.9604 5.4505 -0.0006 9 8 5.5677 4.4007 -0.0005 10 7 5.6333 6.6183 -0.0012 11 6 7.0983 6.6195 -0.0013 12 1 7.4629 5.7777 0.5874 13 6 7.6101 6.4999 -1.4448 14 7 9.0735 6.6301 -1.4341 15 6 9.8632 5.6748 -2.0160 16 1 9.5096 4.6575 -2.0967 17 6 11.1185 6.0137 -2.5022 18 7 11.3657 7.2497 -2.8812 19 14 12.4568 4.7157 -2.6188 20 1 13.6940 5.3281 -3.1660 21 1 12.7321 4.1659 -1.2671 22 1 12.0079 3.6212 -3.5164 23 6 9.6732 7.8080 -0.7925 24 6 9.1381 7.9157 0.6389 25 6 7.6081 7.9276 0.6077 26 1 7.2637 8.7674 0.0042 27 6 7.0702 8.0699 2.0331 28 6 2.7164 3.3783 -1.1972 29 6 2.2631 2.0724 -1.1971 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0278 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8899 35 1 2.0823 1.5635 2.1324 36 1 2.9025 3.8852 2.1325 37 1 3.0900 5.9626 0.8902 38 1 3.0892 5.9628 -0.8898 39 1 5.1476 7.4579 -0.0009 40 1 7.1772 7.2920 -2.0558 41 1 7.3326 5.5279 -1.8530 42 1 10.6500 7.9042 -2.8980 43 1 10.7575 7.6994 -0.7700 44 1 9.4072 8.7044 -1.3527 45 1 9.4834 7.0618 1.2217 46 1 9.5000 8.8376 1.0941 47 1 7.4328 9.0019 2.4669 48 1 5.9806 8.0784 2.0111 49 1 7.4149 7.2305 2.6369 50 1 2.8914 3.8891 -2.1324 51 1 2.0830 1.5633 -2.1324 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000968364632.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:39:57 Heat of formation + Delta-G solvation = -35.430411 kcal Electronic energy + Delta-G solvation = -28337.372164 eV Core-core repulsion = 24621.097109 eV Total energy + Delta-G solvation = -3716.275055 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.29903 -40.27212 -39.19876 -36.45354 -35.50884 -34.53801 -33.00160 -32.31893 -31.81411 -30.64012 -28.93399 -27.86867 -25.85039 -24.57873 -23.66127 -23.63393 -22.71806 -21.74827 -21.35439 -20.78355 -19.43818 -18.03421 -17.52033 -16.88384 -16.75869 -16.26940 -16.08908 -15.83212 -15.79219 -15.45623 -15.14072 -15.13471 -14.63335 -14.58194 -14.51819 -14.20582 -14.07686 -14.00619 -13.73567 -13.40211 -12.99884 -12.95770 -12.88450 -12.68459 -12.58361 -12.54551 -12.28008 -12.06983 -11.93115 -11.88852 -11.72239 -11.67594 -11.66675 -11.51978 -11.24636 -10.88466 -10.60944 -10.09186 -9.79977 -9.41703 -8.97211 -8.31571 -5.44496 0.39116 0.52377 1.53491 1.60399 1.69210 1.80729 2.18419 2.61373 2.89040 3.15000 3.53357 3.66239 3.70129 3.87751 3.90541 3.93217 4.00254 4.10660 4.14533 4.19889 4.31779 4.41010 4.47505 4.49534 4.53753 4.57416 4.58701 4.60220 4.72929 4.76734 4.81453 4.85228 4.92249 5.00427 5.03994 5.06535 5.07657 5.13651 5.18021 5.22209 5.22382 5.36860 5.37223 5.41512 5.51098 5.57184 5.67530 5.72841 5.77497 6.13585 6.34440 6.63535 7.00207 7.35765 7.72560 8.13373 8.93210 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.013418 B = 0.002744 C = 0.002398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2086.190572 B =10203.399596 C =11672.866098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.085 4.085 3 C -0.093 4.093 4 C -0.129 4.129 5 C -0.115 4.115 6 C -0.085 4.085 7 C -0.091 4.091 8 C 0.507 3.493 9 O -0.584 6.584 10 N -0.707 5.707 11 C 0.153 3.847 12 H 0.049 0.951 13 C 0.147 3.853 14 N -0.615 5.615 15 C -0.360 4.360 16 H 0.035 0.965 17 C -0.069 4.069 18 N -0.934 5.934 19 Si 1.111 2.889 20 H -0.283 1.283 21 H -0.282 1.282 22 H -0.280 1.280 23 C 0.150 3.850 24 C -0.119 4.119 25 C -0.083 4.083 26 H 0.084 0.916 27 C -0.134 4.134 28 C -0.121 4.121 29 C -0.132 4.132 30 H 0.052 0.948 31 H 0.070 0.930 32 H 0.055 0.945 33 H 0.073 0.927 34 H 0.076 0.924 35 H 0.137 0.863 36 H 0.133 0.867 37 H 0.136 0.864 38 H 0.126 0.874 39 H 0.417 0.583 40 H 0.023 0.977 41 H 0.023 0.977 42 H 0.256 0.744 43 H 0.046 0.954 44 H 0.014 0.986 45 H 0.044 0.956 46 H 0.088 0.912 47 H 0.073 0.927 48 H 0.074 0.926 49 H 0.040 0.960 50 H 0.123 0.877 51 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.977 -2.708 10.701 26.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.123 4.123 3 C -0.093 4.093 4 C -0.147 4.147 5 C -0.133 4.133 6 C -0.085 4.085 7 C -0.130 4.130 8 C 0.295 3.705 9 O -0.464 6.464 10 N -0.360 5.360 11 C 0.046 3.954 12 H 0.067 0.933 13 C 0.020 3.980 14 N -0.340 5.340 15 C -0.490 4.490 16 H 0.052 0.948 17 C -0.266 4.266 18 N -0.575 5.575 19 Si 0.935 3.065 20 H -0.208 1.208 21 H -0.208 1.208 22 H -0.206 1.206 23 C 0.025 3.975 24 C -0.158 4.158 25 C -0.102 4.102 26 H 0.102 0.898 27 C -0.191 4.191 28 C -0.139 4.139 29 C -0.150 4.150 30 H 0.071 0.929 31 H 0.089 0.911 32 H 0.074 0.926 33 H 0.091 0.909 34 H 0.095 0.905 35 H 0.154 0.846 36 H 0.150 0.850 37 H 0.153 0.847 38 H 0.144 0.856 39 H 0.254 0.746 40 H 0.041 0.959 41 H 0.041 0.959 42 H 0.065 0.935 43 H 0.064 0.936 44 H 0.032 0.968 45 H 0.063 0.937 46 H 0.106 0.894 47 H 0.092 0.908 48 H 0.093 0.907 49 H 0.059 0.941 50 H 0.141 0.859 51 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -21.962 -3.717 10.315 24.547 hybrid contribution -1.307 0.430 -0.222 1.393 sum -23.269 -3.287 10.093 25.576 Atomic orbital electron populations 1.21710 0.93658 1.02439 1.02021 1.20590 0.96994 0.91412 1.03272 1.20189 0.98823 0.97199 0.93075 1.21243 1.00261 0.94896 0.98301 1.21226 0.98844 0.95413 0.97821 1.19513 0.99429 0.95898 0.93689 1.20720 0.89002 0.95374 1.07883 1.21303 0.91203 0.83145 0.74846 1.90751 1.71554 1.33313 1.50749 1.45881 1.06168 1.09127 1.74829 1.21214 0.79716 0.98451 0.96043 0.93269 1.21302 0.84143 0.97414 0.95146 1.44276 1.00770 1.24403 1.64535 1.20111 1.01856 0.89567 1.37439 0.94754 1.27118 1.01636 1.02205 0.95611 1.70905 1.36410 1.05268 1.44934 0.82918 0.73899 0.72782 0.76902 1.20848 1.20797 1.20639 1.20958 0.97211 0.87640 0.91729 1.21995 0.95409 1.01671 0.96747 1.21238 0.95024 0.95636 0.98262 0.89781 1.21763 1.01610 1.01979 0.93763 1.21212 0.99202 0.95559 0.97915 1.21216 1.00530 0.94831 0.98420 0.92872 0.91119 0.92573 0.90882 0.90487 0.84562 0.84959 0.84657 0.85579 0.74590 0.95948 0.95874 0.93453 0.93570 0.96775 0.93697 0.89392 0.90768 0.90731 0.94093 0.85921 0.85152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.77 9.89 71.98 0.71 -1.06 16 2 C -0.09 -1.35 6.06 29.85 0.18 -1.17 16 3 C -0.09 -1.96 5.13 -19.87 -0.10 -2.07 16 4 C -0.13 -2.73 9.70 22.27 0.22 -2.51 16 5 C -0.12 -2.56 9.70 22.27 0.22 -2.35 16 6 C -0.08 -1.98 4.37 -19.87 -0.09 -2.07 16 7 C -0.09 -1.67 5.83 29.10 0.17 -1.50 16 8 C 0.51 14.63 7.79 87.66 0.68 15.31 16 9 O -0.58 -24.13 15.70 -3.03 -0.05 -24.18 16 10 N -0.71 -18.31 4.37 -441.47 -1.93 -20.23 16 11 C 0.15 5.41 2.08 45.21 0.09 5.51 16 12 H 0.05 2.14 7.58 -2.39 -0.02 2.12 16 13 C 0.15 6.68 6.12 86.51 0.53 7.21 16 14 N -0.61 -32.74 2.86 -698.25 -2.00 -34.73 16 15 C -0.36 -21.78 9.49 84.04 0.80 -20.98 16 16 H 0.03 2.18 7.95 -2.91 -0.02 2.16 16 17 C -0.07 -4.09 4.67 84.86 0.40 -3.70 16 18 N -0.93 -57.93 12.38 21.65 0.27 -57.67 16 19 Si 1.11 53.63 29.99 68.60 2.06 55.69 16 20 H -0.28 -13.48 7.11 99.48 0.71 -12.77 16 21 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 22 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 23 C 0.15 7.11 4.70 86.36 0.41 7.52 16 24 C -0.12 -4.26 5.36 30.67 0.16 -4.10 16 25 C -0.08 -2.41 2.27 -10.76 -0.02 -2.43 16 26 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 27 C -0.13 -2.88 9.02 71.99 0.65 -2.23 16 28 C -0.12 -2.94 9.70 22.27 0.22 -2.72 16 29 C -0.13 -3.01 9.70 22.27 0.22 -2.80 16 30 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.07 0.69 8.14 -2.38 -0.02 0.67 16 32 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 33 H 0.07 1.11 8.09 -2.39 -0.02 1.09 16 34 H 0.08 1.11 8.09 -2.39 -0.02 1.09 16 35 H 0.14 2.26 8.06 -2.91 -0.02 2.23 16 36 H 0.13 2.43 8.06 -2.91 -0.02 2.41 16 37 H 0.14 1.52 8.09 -2.39 -0.02 1.51 16 38 H 0.13 1.70 8.08 -2.39 -0.02 1.68 16 39 H 0.42 7.08 8.31 -92.71 -0.77 6.31 16 40 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 41 H 0.02 1.18 7.93 -2.38 -0.02 1.16 16 42 H 0.26 16.04 6.74 -92.71 -0.62 15.42 16 43 H 0.05 2.50 6.24 -2.39 -0.01 2.49 16 44 H 0.01 0.67 7.88 -2.39 -0.02 0.66 16 45 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 46 H 0.09 2.62 8.14 -2.39 -0.02 2.60 16 47 H 0.07 1.34 8.14 -2.38 -0.02 1.32 16 48 H 0.07 1.25 7.35 -2.39 -0.02 1.23 16 49 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 50 H 0.12 2.75 8.06 -2.91 -0.02 2.72 16 51 H 0.13 2.51 8.06 -2.91 -0.02 2.49 16 Total: -1.00 -79.96 406.04 4.06 -75.90 By element: Atomic # 1 Polarization: 21.10 SS G_CDS: 0.27 Total: 21.36 kcal Atomic # 6 Polarization: -21.57 SS G_CDS: 5.43 Total: -16.14 kcal Atomic # 7 Polarization: -108.98 SS G_CDS: -3.66 Total: -112.63 kcal Atomic # 8 Polarization: -24.13 SS G_CDS: -0.05 Total: -24.18 kcal Atomic # 14 Polarization: 53.63 SS G_CDS: 2.06 Total: 55.69 kcal Total: -79.96 4.06 -75.90 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968364632.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.469 kcal (2) G-P(sol) polarization free energy of solvation -79.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds