Wall clock time and date at job start Tue Mar 31 2020 16:41:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50694 * 109.47551 * 2 1 4 4 C 1.38232 * 120.00211 * 89.99861 * 3 2 1 5 5 C 1.38237 * 119.99894 * 179.97438 * 4 3 2 6 6 C 1.38231 * 120.00102 * 359.97438 * 5 4 3 7 7 C 1.50706 * 120.00108 * 180.02562 * 6 5 4 8 8 H 1.08997 * 109.46890 * 359.97438 * 7 6 5 9 9 C 1.52999 * 109.46988 * 239.99799 * 7 6 5 10 10 C 1.53002 * 109.47051 * 119.99496 * 7 6 5 11 11 C 1.50705 * 109.46641 * 185.00129 * 10 7 6 12 12 O 1.21283 * 120.00313 * 0.02562 * 11 10 7 13 13 N 1.34780 * 119.99750 * 180.02562 * 11 10 7 14 14 C 1.47418 * 125.64822 * 359.97391 * 13 11 10 15 15 C 1.54911 * 104.83317 * 155.91896 * 14 13 11 16 16 C 1.55148 * 101.58089 * 37.00969 * 15 14 13 17 17 H 1.09000 * 110.72375 * 83.03755 * 16 15 14 18 18 N 1.46506 * 110.72183 * 206.13735 * 16 15 14 19 19 C 1.36929 * 119.99807 * 273.54492 * 18 16 15 20 20 H 1.08004 * 120.00341 * 0.27647 * 19 18 16 21 21 C 1.38815 * 120.00031 * 179.97438 * 19 18 16 22 22 N 1.31617 * 119.99916 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99958 * 180.02562 * 21 19 18 24 24 H 1.48494 * 109.47228 * 0.02562 * 23 21 19 25 25 H 1.48501 * 109.46793 * 120.00365 * 23 21 19 26 26 H 1.48500 * 109.47000 * 240.00457 * 23 21 19 27 27 C 1.47024 * 125.64817 * 180.02562 * 13 11 10 28 28 C 1.38231 * 120.00228 * 0.27006 * 6 5 4 29 29 C 1.38237 * 119.99930 * 270.02495 * 3 2 1 30 30 H 1.09004 * 109.46644 * 299.99583 * 1 2 3 31 31 H 1.08997 * 109.46879 * 60.00157 * 1 2 3 32 32 H 1.09001 * 109.46844 * 180.02562 * 1 2 3 33 33 H 1.09008 * 109.47013 * 239.99765 * 2 1 3 34 34 H 1.09001 * 109.47345 * 119.99982 * 2 1 3 35 35 H 1.07996 * 119.99875 * 0.02562 * 4 3 2 36 36 H 1.08000 * 119.99527 * 179.97438 * 5 4 3 37 37 H 1.08998 * 109.46889 * 59.99735 * 9 7 6 38 38 H 1.08997 * 109.46701 * 179.97438 * 9 7 6 39 39 H 1.08997 * 109.46963 * 299.99537 * 9 7 6 40 40 H 1.08993 * 109.46843 * 65.00721 * 10 7 6 41 41 H 1.08995 * 109.47058 * 304.99932 * 10 7 6 42 42 H 1.09000 * 110.36948 * 37.07752 * 14 13 11 43 43 H 1.08998 * 110.46167 * 274.80465 * 14 13 11 44 44 H 1.08996 * 111.00069 * 278.93358 * 15 14 13 45 45 H 1.09003 * 111.03491 * 155.09799 * 15 14 13 46 46 H 0.96999 * 120.00076 * 93.54555 * 18 16 15 47 47 H 0.97000 * 120.00284 * 179.97438 * 22 21 19 48 48 H 1.08997 * 109.87964 * 61.59257 * 27 13 11 49 49 H 1.08993 * 109.87956 * 300.43096 * 27 13 11 50 50 H 1.08001 * 120.00547 * 179.72738 * 28 6 5 51 51 H 1.08009 * 119.99922 * 0.02562 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.2628 2.0724 1.1971 5 6 2.7242 3.3755 1.1970 6 6 2.9557 4.0267 -0.0001 7 6 3.4593 5.4471 -0.0002 8 1 3.5798 5.7899 1.0274 9 6 2.4525 6.3450 -0.7221 10 6 4.8075 5.5102 -0.7208 11 6 5.3690 6.9047 -0.6144 12 8 4.7519 7.7633 -0.0204 13 7 6.5571 7.1976 -1.1795 14 6 7.4088 6.2546 -1.9268 15 6 8.2700 7.1477 -2.8545 16 6 8.5355 8.3764 -1.9453 17 1 9.3747 8.1868 -1.2760 18 7 8.7787 9.5751 -2.7517 19 6 10.0420 9.8536 -3.2007 20 1 10.8583 9.1872 -2.9641 21 6 10.2723 10.9891 -3.9652 22 7 9.2765 11.7983 -4.2582 23 14 11.9956 11.3685 -4.5783 24 1 12.9295 10.3106 -4.1161 25 1 11.9942 11.4131 -6.0626 26 1 12.4328 12.6833 -4.0439 27 6 7.2187 8.5103 -1.1517 28 6 2.7205 3.3768 -1.1972 29 6 2.2624 2.0725 -1.1972 30 1 -0.3633 0.5138 0.8901 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 2.0832 1.5632 2.1324 36 1 2.9038 3.8847 2.1323 37 1 1.4921 6.3000 -0.2087 38 1 2.8166 7.3724 -0.7218 39 1 2.3317 6.0024 -1.7497 40 1 4.6705 5.2529 -1.7710 41 1 5.4987 4.8041 -0.2608 42 1 6.7947 5.5750 -2.5176 43 1 8.0455 5.6925 -1.2436 44 1 7.7136 7.4347 -3.7468 45 1 9.2024 6.6501 -3.1212 46 1 8.0448 10.1715 -2.9676 47 1 9.4375 12.5920 -4.7921 48 1 7.4338 8.7952 -0.1219 49 1 6.5784 9.2580 -1.6194 50 1 2.8971 3.8870 -2.1326 51 1 2.0815 1.5636 -2.1325 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000969932981.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:41:02 Heat of formation + Delta-G solvation = -18.355641 kcal Electronic energy + Delta-G solvation = -27451.280457 eV Core-core repulsion = 23735.745820 eV Total energy + Delta-G solvation = -3715.534637 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.29550 -39.54418 -37.53421 -35.82059 -34.14050 -33.25714 -31.57870 -31.15084 -29.58942 -29.23344 -28.37775 -26.99288 -24.60874 -23.65813 -23.04252 -22.80128 -21.80797 -20.35639 -19.95461 -18.85418 -17.40013 -17.25910 -16.23140 -16.02742 -15.92652 -15.26587 -15.14372 -14.75955 -14.31626 -14.10661 -13.98600 -13.86540 -13.67155 -13.48841 -13.31385 -13.25397 -12.89589 -12.66803 -12.54149 -12.30266 -12.08218 -11.86188 -11.70557 -11.65747 -11.49184 -11.25226 -11.23105 -11.18092 -10.88803 -10.87696 -10.76562 -10.71353 -10.34895 -10.07142 -9.78614 -9.55176 -9.12856 -8.99037 -8.71565 -8.38679 -7.06113 -5.83929 -3.14618 1.10591 1.19453 2.79583 3.15682 3.39377 3.45043 3.47400 3.52986 4.37067 4.47830 4.51347 4.52969 4.68167 4.79405 4.86878 4.91859 4.96750 4.99558 5.04261 5.16539 5.25473 5.27198 5.29348 5.32745 5.40443 5.51354 5.51814 5.55402 5.58707 5.60056 5.63881 5.74763 5.77177 5.83971 5.86399 5.92851 5.97035 6.05915 6.13117 6.19796 6.24754 6.35876 6.36893 6.38451 6.49960 6.57704 6.59408 6.79854 6.89235 7.63936 7.75101 8.32763 8.35434 9.44975 9.99408 10.34073 11.38326 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.029463 B = 0.001866 C = 0.001819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 950.103773 B =14998.176146 C =15388.043157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.085 4.085 3 C -0.090 4.090 4 C -0.117 4.117 5 C -0.113 4.113 6 C -0.077 4.077 7 C -0.035 4.035 8 H 0.086 0.914 9 C -0.149 4.149 10 C -0.127 4.127 11 C 0.525 3.475 12 O -0.543 6.543 13 N -0.613 5.613 14 C 0.098 3.902 15 C -0.155 4.155 16 C 0.171 3.829 17 H 0.064 0.936 18 N -0.716 5.716 19 C -0.245 4.245 20 H 0.073 0.927 21 C -0.011 4.011 22 N -0.930 5.930 23 Si 0.909 3.091 24 H -0.280 1.280 25 H -0.291 1.291 26 H -0.291 1.291 27 C 0.101 3.899 28 C -0.111 4.111 29 C -0.116 4.116 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.056 0.944 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.119 0.881 36 H 0.121 0.879 37 H 0.052 0.948 38 H 0.081 0.919 39 H 0.049 0.951 40 H 0.092 0.908 41 H 0.091 0.909 42 H 0.068 0.932 43 H 0.065 0.935 44 H 0.075 0.925 45 H 0.076 0.924 46 H 0.386 0.614 47 H 0.256 0.744 48 H 0.064 0.936 49 H 0.070 0.930 50 H 0.121 0.879 51 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.445 -24.009 8.607 29.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.122 4.122 3 C -0.090 4.090 4 C -0.135 4.135 5 C -0.131 4.131 6 C -0.077 4.077 7 C -0.054 4.054 8 H 0.104 0.896 9 C -0.206 4.206 10 C -0.167 4.167 11 C 0.314 3.686 12 O -0.422 6.422 13 N -0.347 5.347 14 C -0.025 4.025 15 C -0.196 4.196 16 C 0.059 3.941 17 H 0.081 0.919 18 N -0.357 5.357 19 C -0.375 4.375 20 H 0.091 0.909 21 C -0.207 4.207 22 N -0.577 5.577 23 Si 0.740 3.260 24 H -0.205 1.205 25 H -0.218 1.218 26 H -0.218 1.218 27 C -0.022 4.022 28 C -0.129 4.129 29 C -0.134 4.134 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.089 0.911 34 H 0.088 0.912 35 H 0.137 0.863 36 H 0.139 0.861 37 H 0.071 0.929 38 H 0.100 0.900 39 H 0.068 0.932 40 H 0.110 0.890 41 H 0.110 0.890 42 H 0.086 0.914 43 H 0.083 0.917 44 H 0.094 0.906 45 H 0.094 0.906 46 H 0.220 0.780 47 H 0.066 0.934 48 H 0.083 0.917 49 H 0.089 0.911 50 H 0.139 0.861 51 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -15.652 -23.521 8.914 29.626 hybrid contribution 0.784 0.371 -0.578 1.042 sum -14.868 -23.150 8.337 28.749 Atomic orbital electron populations 1.21749 0.94782 1.01616 1.02254 1.20534 0.96146 0.92798 1.02733 1.19873 0.99607 0.96228 0.93272 1.20988 1.00175 0.94886 0.97436 1.21079 0.99636 0.94716 0.97641 1.19909 0.98949 0.95610 0.93191 1.19886 0.93330 0.90918 1.01258 0.89610 1.21964 0.98155 1.01255 0.99233 1.21710 0.97495 0.94602 1.02910 1.20253 0.79597 0.90365 0.78433 1.90663 1.58591 1.49872 1.43026 1.48532 1.19507 1.12800 1.53894 1.22393 0.93142 0.92628 0.94358 1.23559 0.99166 0.97922 0.98942 1.21190 0.93214 0.88084 0.91571 0.91852 1.42372 1.08808 1.24030 1.60479 1.19258 0.86280 1.05617 1.26394 0.90897 1.24780 0.97557 0.97538 1.00825 1.69675 1.29996 1.15129 1.42915 0.86100 0.83786 0.77878 0.78274 1.20482 1.21825 1.21783 1.22265 0.94819 0.84373 1.00739 1.21011 0.99457 0.94610 0.97786 1.21003 1.00093 0.94887 0.97444 0.92585 0.92543 0.92478 0.91124 0.91170 0.86328 0.86068 0.92870 0.90048 0.93154 0.88966 0.89024 0.91361 0.91656 0.90637 0.90573 0.77953 0.93399 0.91721 0.91144 0.86061 0.86283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.82 9.89 37.16 0.37 -0.45 16 2 C -0.08 -0.51 6.06 -27.89 -0.17 -0.68 16 3 C -0.09 -0.72 5.13 -104.63 -0.54 -1.26 16 4 C -0.12 -0.97 9.70 -39.58 -0.38 -1.36 16 5 C -0.11 -1.03 9.67 -39.58 -0.38 -1.41 16 6 C -0.08 -0.74 4.78 -104.62 -0.50 -1.24 16 7 C -0.04 -0.38 2.21 -91.77 -0.20 -0.58 16 8 H 0.09 1.00 7.69 -51.93 -0.40 0.60 16 9 C -0.15 -1.70 8.74 37.16 0.32 -1.37 16 10 C -0.13 -1.38 3.92 -27.88 -0.11 -1.49 16 11 C 0.52 7.81 7.57 -10.98 -0.08 7.72 16 12 O -0.54 -9.84 14.29 5.55 0.08 -9.76 16 13 N -0.61 -9.29 3.33 -170.52 -0.57 -9.86 16 14 C 0.10 1.24 6.69 -2.53 -0.02 1.23 16 15 C -0.15 -2.46 6.77 -24.59 -0.17 -2.63 16 16 C 0.17 3.24 3.59 -66.10 -0.24 3.00 16 17 H 0.06 1.20 8.12 -51.93 -0.42 0.77 16 18 N -0.72 -17.38 5.25 -51.65 -0.27 -17.65 16 19 C -0.24 -6.55 9.98 -15.06 -0.15 -6.70 16 20 H 0.07 1.88 7.83 -52.48 -0.41 1.47 16 21 C -0.01 -0.30 5.50 -17.43 -0.10 -0.39 16 22 N -0.93 -27.64 13.06 55.49 0.72 -26.91 16 23 Si 0.91 21.87 29.55 -169.99 -5.02 16.85 16 24 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 25 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 26 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 27 C 0.10 1.79 6.62 -3.06 -0.02 1.77 16 28 C -0.11 -1.00 8.76 -39.58 -0.35 -1.35 16 29 C -0.12 -0.97 9.70 -39.58 -0.38 -1.35 16 30 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 31 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.06 0.26 8.14 -51.93 -0.42 -0.17 16 33 H 0.07 0.39 8.09 -51.92 -0.42 -0.03 16 34 H 0.07 0.38 8.09 -51.93 -0.42 -0.04 16 35 H 0.12 0.78 8.06 -52.49 -0.42 0.36 16 36 H 0.12 0.98 7.95 -52.49 -0.42 0.56 16 37 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 38 H 0.08 1.14 5.95 -51.93 -0.31 0.83 16 39 H 0.05 0.52 7.37 -51.93 -0.38 0.13 16 40 H 0.09 0.88 7.29 -51.93 -0.38 0.50 16 41 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 42 H 0.07 0.72 7.48 -51.93 -0.39 0.33 16 43 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 44 H 0.07 1.33 8.14 -51.93 -0.42 0.90 16 45 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 46 H 0.39 10.11 7.51 -40.82 -0.31 9.80 16 47 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 48 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 49 H 0.07 1.38 7.68 -51.93 -0.40 0.98 16 50 H 0.12 0.98 7.16 -52.49 -0.38 0.61 16 51 H 0.12 0.80 8.06 -52.48 -0.42 0.38 16 LS Contribution 408.01 15.07 6.15 6.15 Total: -1.00 -31.12 408.01 -10.82 -41.94 By element: Atomic # 1 Polarization: 16.59 SS G_CDS: -8.81 Total: 7.77 kcal Atomic # 6 Polarization: -5.44 SS G_CDS: -3.09 Total: -8.54 kcal Atomic # 7 Polarization: -54.30 SS G_CDS: -0.11 Total: -54.41 kcal Atomic # 8 Polarization: -9.84 SS G_CDS: 0.08 Total: -9.76 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -31.12 -10.82 -41.94 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969932981.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.583 kcal (2) G-P(sol) polarization free energy of solvation -31.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds