Wall clock time and date at job start Tue Mar 31 2020 16:41:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50694 * 109.47551 * 2 1 4 4 C 1.38232 * 120.00211 * 89.99861 * 3 2 1 5 5 C 1.38237 * 119.99894 * 179.97438 * 4 3 2 6 6 C 1.38231 * 120.00102 * 359.97438 * 5 4 3 7 7 C 1.50706 * 120.00108 * 180.02562 * 6 5 4 8 8 H 1.08997 * 109.46890 * 359.97438 * 7 6 5 9 9 C 1.52999 * 109.46988 * 239.99799 * 7 6 5 10 10 C 1.53002 * 109.47051 * 119.99496 * 7 6 5 11 11 C 1.50705 * 109.46641 * 185.00129 * 10 7 6 12 12 O 1.21283 * 120.00313 * 0.02562 * 11 10 7 13 13 N 1.34780 * 119.99750 * 180.02562 * 11 10 7 14 14 C 1.47418 * 125.64822 * 359.97391 * 13 11 10 15 15 C 1.54911 * 104.83317 * 155.91896 * 14 13 11 16 16 C 1.55148 * 101.58089 * 37.00969 * 15 14 13 17 17 H 1.09000 * 110.72375 * 83.03755 * 16 15 14 18 18 N 1.46506 * 110.72183 * 206.13735 * 16 15 14 19 19 C 1.36929 * 119.99807 * 273.54492 * 18 16 15 20 20 H 1.08004 * 120.00341 * 0.27647 * 19 18 16 21 21 C 1.38815 * 120.00031 * 179.97438 * 19 18 16 22 22 N 1.31617 * 119.99916 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99958 * 180.02562 * 21 19 18 24 24 H 1.48494 * 109.47228 * 0.02562 * 23 21 19 25 25 H 1.48501 * 109.46793 * 120.00365 * 23 21 19 26 26 H 1.48500 * 109.47000 * 240.00457 * 23 21 19 27 27 C 1.47024 * 125.64817 * 180.02562 * 13 11 10 28 28 C 1.38231 * 120.00228 * 0.27006 * 6 5 4 29 29 C 1.38237 * 119.99930 * 270.02495 * 3 2 1 30 30 H 1.09004 * 109.46644 * 299.99583 * 1 2 3 31 31 H 1.08997 * 109.46879 * 60.00157 * 1 2 3 32 32 H 1.09001 * 109.46844 * 180.02562 * 1 2 3 33 33 H 1.09008 * 109.47013 * 239.99765 * 2 1 3 34 34 H 1.09001 * 109.47345 * 119.99982 * 2 1 3 35 35 H 1.07996 * 119.99875 * 0.02562 * 4 3 2 36 36 H 1.08000 * 119.99527 * 179.97438 * 5 4 3 37 37 H 1.08998 * 109.46889 * 59.99735 * 9 7 6 38 38 H 1.08997 * 109.46701 * 179.97438 * 9 7 6 39 39 H 1.08997 * 109.46963 * 299.99537 * 9 7 6 40 40 H 1.08993 * 109.46843 * 65.00721 * 10 7 6 41 41 H 1.08995 * 109.47058 * 304.99932 * 10 7 6 42 42 H 1.09000 * 110.36948 * 37.07752 * 14 13 11 43 43 H 1.08998 * 110.46167 * 274.80465 * 14 13 11 44 44 H 1.08996 * 111.00069 * 278.93358 * 15 14 13 45 45 H 1.09003 * 111.03491 * 155.09799 * 15 14 13 46 46 H 0.96999 * 120.00076 * 93.54555 * 18 16 15 47 47 H 0.97000 * 120.00284 * 179.97438 * 22 21 19 48 48 H 1.08997 * 109.87964 * 61.59257 * 27 13 11 49 49 H 1.08993 * 109.87956 * 300.43096 * 27 13 11 50 50 H 1.08001 * 120.00547 * 179.72738 * 28 6 5 51 51 H 1.08009 * 119.99922 * 0.02562 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.2628 2.0724 1.1971 5 6 2.7242 3.3755 1.1970 6 6 2.9557 4.0267 -0.0001 7 6 3.4593 5.4471 -0.0002 8 1 3.5798 5.7899 1.0274 9 6 2.4525 6.3450 -0.7221 10 6 4.8075 5.5102 -0.7208 11 6 5.3690 6.9047 -0.6144 12 8 4.7519 7.7633 -0.0204 13 7 6.5571 7.1976 -1.1795 14 6 7.4088 6.2546 -1.9268 15 6 8.2700 7.1477 -2.8545 16 6 8.5355 8.3764 -1.9453 17 1 9.3747 8.1868 -1.2760 18 7 8.7787 9.5751 -2.7517 19 6 10.0420 9.8536 -3.2007 20 1 10.8583 9.1872 -2.9641 21 6 10.2723 10.9891 -3.9652 22 7 9.2765 11.7983 -4.2582 23 14 11.9956 11.3685 -4.5783 24 1 12.9295 10.3106 -4.1161 25 1 11.9942 11.4131 -6.0626 26 1 12.4328 12.6833 -4.0439 27 6 7.2187 8.5103 -1.1517 28 6 2.7205 3.3768 -1.1972 29 6 2.2624 2.0725 -1.1972 30 1 -0.3633 0.5138 0.8901 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 2.0832 1.5632 2.1324 36 1 2.9038 3.8847 2.1323 37 1 1.4921 6.3000 -0.2087 38 1 2.8166 7.3724 -0.7218 39 1 2.3317 6.0024 -1.7497 40 1 4.6705 5.2529 -1.7710 41 1 5.4987 4.8041 -0.2608 42 1 6.7947 5.5750 -2.5176 43 1 8.0455 5.6925 -1.2436 44 1 7.7136 7.4347 -3.7468 45 1 9.2024 6.6501 -3.1212 46 1 8.0448 10.1715 -2.9676 47 1 9.4375 12.5920 -4.7921 48 1 7.4338 8.7952 -0.1219 49 1 6.5784 9.2580 -1.6194 50 1 2.8971 3.8870 -2.1326 51 1 2.0815 1.5636 -2.1325 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000969932981.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:41:01 Heat of formation + Delta-G solvation = -34.267808 kcal Electronic energy + Delta-G solvation = -27451.970460 eV Core-core repulsion = 23735.745820 eV Total energy + Delta-G solvation = -3716.224641 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.31714 -40.40337 -38.83223 -36.62773 -35.91126 -33.91828 -33.31955 -31.76724 -31.07996 -30.19466 -29.32802 -28.26284 -25.70049 -25.07682 -24.05867 -23.66011 -22.53228 -21.59363 -20.97635 -19.96082 -19.32952 -18.31677 -17.33725 -17.07626 -16.73942 -16.47545 -16.08841 -15.96939 -15.57338 -15.34852 -14.87751 -14.84224 -14.55990 -14.49375 -14.43152 -14.19007 -13.95005 -13.69347 -13.63613 -13.35278 -13.16360 -12.99111 -12.92039 -12.74714 -12.69944 -12.33867 -12.32273 -12.23730 -12.07978 -12.05714 -11.80785 -11.73644 -11.68647 -11.57277 -11.47091 -10.95450 -10.76961 -9.75760 -9.65342 -9.36189 -9.04817 -7.95323 -5.25713 0.46109 0.56542 1.49176 1.49903 1.59902 1.63544 1.97382 2.56960 2.88194 3.35741 3.46740 3.76482 3.77475 3.80862 3.92976 4.00993 4.04989 4.12779 4.20389 4.21514 4.28787 4.38262 4.41244 4.48123 4.53530 4.55259 4.63283 4.64194 4.68079 4.72087 4.75517 4.83822 4.86796 5.00197 5.03000 5.09986 5.12087 5.17147 5.20757 5.22387 5.27267 5.30128 5.38135 5.41848 5.45690 5.54067 5.60818 5.79200 5.80644 6.18058 6.25236 6.57645 7.16609 7.31552 8.03576 8.27161 9.28464 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.029463 B = 0.001866 C = 0.001819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 950.103773 B =14998.176146 C =15388.043157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.084 4.084 3 C -0.093 4.093 4 C -0.124 4.124 5 C -0.124 4.124 6 C -0.086 4.086 7 C -0.029 4.029 8 H 0.071 0.929 9 C -0.145 4.145 10 C -0.116 4.116 11 C 0.520 3.480 12 O -0.583 6.583 13 N -0.615 5.615 14 C 0.106 3.894 15 C -0.145 4.145 16 C 0.164 3.836 17 H 0.069 0.931 18 N -0.732 5.732 19 C -0.238 4.238 20 H 0.085 0.915 21 C -0.077 4.077 22 N -0.972 5.972 23 Si 0.975 3.025 24 H -0.261 1.261 25 H -0.295 1.295 26 H -0.297 1.297 27 C 0.110 3.890 28 C -0.116 4.116 29 C -0.123 4.123 30 H 0.050 0.950 31 H 0.051 0.949 32 H 0.068 0.932 33 H 0.078 0.922 34 H 0.077 0.923 35 H 0.133 0.867 36 H 0.125 0.875 37 H 0.054 0.946 38 H 0.051 0.949 39 H 0.061 0.939 40 H 0.113 0.887 41 H 0.114 0.886 42 H 0.101 0.899 43 H 0.093 0.907 44 H 0.055 0.945 45 H 0.089 0.911 46 H 0.371 0.629 47 H 0.250 0.750 48 H 0.059 0.941 49 H 0.042 0.958 50 H 0.130 0.870 51 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.037 -27.670 8.642 32.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.121 4.121 3 C -0.093 4.093 4 C -0.142 4.142 5 C -0.142 4.142 6 C -0.086 4.086 7 C -0.048 4.048 8 H 0.089 0.911 9 C -0.202 4.202 10 C -0.155 4.155 11 C 0.311 3.689 12 O -0.463 6.463 13 N -0.349 5.349 14 C -0.016 4.016 15 C -0.186 4.186 16 C 0.054 3.946 17 H 0.087 0.913 18 N -0.372 5.372 19 C -0.369 4.369 20 H 0.102 0.898 21 C -0.269 4.269 22 N -0.623 5.623 23 Si 0.804 3.196 24 H -0.185 1.185 25 H -0.222 1.222 26 H -0.225 1.225 27 C -0.014 4.014 28 C -0.134 4.134 29 C -0.141 4.141 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.087 0.913 33 H 0.097 0.903 34 H 0.096 0.904 35 H 0.151 0.849 36 H 0.143 0.857 37 H 0.073 0.927 38 H 0.070 0.930 39 H 0.080 0.920 40 H 0.131 0.869 41 H 0.132 0.868 42 H 0.119 0.881 43 H 0.112 0.888 44 H 0.074 0.926 45 H 0.107 0.893 46 H 0.203 0.797 47 H 0.059 0.941 48 H 0.078 0.922 49 H 0.060 0.940 50 H 0.148 0.852 51 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -15.231 -27.265 8.973 32.494 hybrid contribution 0.575 1.440 -0.507 1.631 sum -14.655 -25.825 8.467 30.877 Atomic orbital electron populations 1.21737 0.94493 1.02273 1.01768 1.20576 0.96305 0.91690 1.03548 1.20166 0.98854 0.97157 0.93110 1.21210 0.99919 0.94683 0.98362 1.21231 0.99895 0.95264 0.97765 1.19779 1.00125 0.94839 0.93822 1.19762 0.93172 0.91614 1.00233 0.91100 1.21898 0.98431 0.99719 1.00197 1.21731 0.97572 0.91795 1.04411 1.21063 0.78890 0.91648 0.77339 1.90656 1.59513 1.51476 1.44691 1.48629 1.19948 1.12036 1.54298 1.22539 0.93082 0.91768 0.94243 1.23358 1.00284 0.96848 0.98114 1.21401 0.93823 0.87468 0.91863 0.91297 1.42563 1.07681 1.25631 1.61297 1.19683 0.87382 1.05097 1.24770 0.89755 1.25609 1.01182 0.97991 1.02143 1.69842 1.32109 1.15762 1.44537 0.85047 0.79794 0.77584 0.77157 1.18498 1.22249 1.22469 1.21935 0.94049 0.85592 0.99826 1.21149 0.99461 0.94999 0.97802 1.21247 0.99766 0.94777 0.98300 0.93087 0.93016 0.91286 0.90298 0.90405 0.84909 0.85711 0.92664 0.93040 0.91966 0.86898 0.86818 0.88069 0.88841 0.92597 0.89253 0.79695 0.94104 0.92250 0.93953 0.85191 0.84735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 9.89 71.98 0.71 -0.60 16 2 C -0.08 -0.80 6.06 29.85 0.18 -0.62 16 3 C -0.09 -1.28 5.13 -19.87 -0.10 -1.38 16 4 C -0.12 -1.82 9.70 22.27 0.22 -1.60 16 5 C -0.12 -2.07 9.67 22.27 0.22 -1.86 16 6 C -0.09 -1.50 4.78 -19.87 -0.09 -1.60 16 7 C -0.03 -0.59 2.21 -11.54 -0.03 -0.61 16 8 H 0.07 1.64 7.69 -2.39 -0.02 1.63 16 9 C -0.15 -3.27 8.74 71.98 0.63 -2.64 16 10 C -0.12 -2.23 3.92 29.85 0.12 -2.11 16 11 C 0.52 14.99 7.57 87.66 0.66 15.66 16 12 O -0.58 -21.58 14.29 -3.04 -0.04 -21.63 16 13 N -0.62 -17.83 3.33 -811.80 -2.70 -20.53 16 14 C 0.11 2.32 6.69 86.86 0.58 2.90 16 15 C -0.15 -4.35 6.77 31.98 0.22 -4.14 16 16 C 0.16 6.15 3.59 46.18 0.17 6.31 16 17 H 0.07 2.52 8.12 -2.39 -0.02 2.50 16 18 N -0.73 -36.15 5.25 -317.33 -1.67 -37.82 16 19 C -0.24 -12.74 9.98 84.04 0.84 -11.90 16 20 H 0.08 4.24 7.83 -2.91 -0.02 4.21 16 21 C -0.08 -4.36 5.50 84.86 0.47 -3.89 16 22 N -0.97 -59.47 13.06 21.65 0.28 -59.19 16 23 Si 0.97 45.28 29.55 68.60 2.03 47.31 16 24 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16 25 H -0.30 -13.77 7.11 99.48 0.71 -13.07 16 26 H -0.30 -13.99 7.11 99.48 0.71 -13.28 16 27 C 0.11 3.97 6.62 86.73 0.57 4.54 16 28 C -0.12 -1.82 8.76 22.27 0.20 -1.62 16 29 C -0.12 -1.74 9.70 22.27 0.22 -1.52 16 30 H 0.05 0.51 8.14 -2.38 -0.02 0.49 16 31 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 32 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 33 H 0.08 0.63 8.09 -2.38 -0.02 0.62 16 34 H 0.08 0.63 8.09 -2.39 -0.02 0.61 16 35 H 0.13 1.48 8.06 -2.91 -0.02 1.46 16 36 H 0.12 1.90 7.95 -2.91 -0.02 1.88 16 37 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 38 H 0.05 1.48 5.95 -2.39 -0.01 1.47 16 39 H 0.06 1.21 7.37 -2.39 -0.02 1.19 16 40 H 0.11 1.75 7.29 -2.39 -0.02 1.73 16 41 H 0.11 1.75 8.14 -2.39 -0.02 1.73 16 42 H 0.10 1.64 7.48 -2.39 -0.02 1.63 16 43 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 44 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 45 H 0.09 2.46 8.14 -2.39 -0.02 2.44 16 46 H 0.37 20.27 7.51 -92.71 -0.70 19.57 16 47 H 0.25 14.87 8.31 -92.71 -0.77 14.10 16 48 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 49 H 0.04 1.75 7.68 -2.39 -0.02 1.73 16 50 H 0.13 1.73 7.16 -2.91 -0.02 1.71 16 51 H 0.13 1.42 8.06 -2.91 -0.02 1.40 16 Total: -1.00 -69.39 408.01 3.87 -65.52 By element: Atomic # 1 Polarization: 32.82 SS G_CDS: 0.20 Total: 33.03 kcal Atomic # 6 Polarization: -12.45 SS G_CDS: 5.77 Total: -6.68 kcal Atomic # 7 Polarization: -113.46 SS G_CDS: -4.08 Total: -117.54 kcal Atomic # 8 Polarization: -21.58 SS G_CDS: -0.04 Total: -21.63 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 2.03 Total: 47.31 kcal Total: -69.39 3.87 -65.52 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969932981.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.254 kcal (2) G-P(sol) polarization free energy of solvation -69.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds