Wall clock time and date at job start Tue Mar 31 2020 16:41:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50695 * 109.46954 * 2 1 4 4 C 1.38233 * 120.00330 * 89.99820 * 3 2 1 5 5 C 1.38230 * 120.00375 * 179.97438 * 4 3 2 6 6 C 1.38230 * 120.00174 * 0.02884 * 5 4 3 7 7 C 1.50696 * 120.00543 * 179.97438 * 6 5 4 8 8 H 1.09004 * 109.47010 * 0.02562 * 7 6 5 9 9 C 1.53006 * 109.47489 * 119.99607 * 7 6 5 10 10 C 1.53003 * 109.47225 * 239.99765 * 7 6 5 11 11 C 1.50706 * 109.46951 * 174.99631 * 10 7 6 12 12 O 1.21278 * 119.99926 * 0.02562 * 11 10 7 13 13 N 1.34771 * 119.99931 * 180.02562 * 11 10 7 14 14 C 1.47425 * 125.64767 * 359.69212 * 13 11 10 15 15 C 1.54910 * 104.83231 * 156.13676 * 14 13 11 16 16 C 1.55160 * 101.58122 * 37.00939 * 15 14 13 17 17 H 1.09002 * 110.71871 * 82.86501 * 16 15 14 18 18 N 1.46502 * 110.72023 * 206.13218 * 16 15 14 19 19 C 1.36937 * 120.00040 * 268.52290 * 18 16 15 20 20 H 1.08001 * 119.99972 * 0.02562 * 19 18 16 21 21 C 1.38810 * 119.99922 * 179.97438 * 19 18 16 22 22 N 1.31618 * 119.99928 * 0.02562 * 21 19 18 23 23 Si 1.86795 * 120.00322 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.47178 * 89.99773 * 23 21 19 25 25 H 1.48499 * 109.47610 * 210.00575 * 23 21 19 26 26 H 1.48504 * 109.47046 * 330.00757 * 23 21 19 27 27 C 1.47026 * 125.65100 * 180.02562 * 13 11 10 28 28 C 1.38245 * 119.99787 * 0.24972 * 6 5 4 29 29 C 1.38228 * 119.99452 * 359.49347 * 28 6 5 30 30 H 1.08999 * 109.47304 * 299.99959 * 1 2 3 31 31 H 1.08996 * 109.47438 * 60.00416 * 1 2 3 32 32 H 1.09000 * 109.47238 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.46833 * 240.00286 * 2 1 3 34 34 H 1.08999 * 109.47248 * 120.00063 * 2 1 3 35 35 H 1.08002 * 120.00071 * 0.02562 * 4 3 2 36 36 H 1.08003 * 120.00355 * 179.97438 * 5 4 3 37 37 H 1.08994 * 109.46518 * 300.00597 * 9 7 6 38 38 H 1.09004 * 109.46666 * 60.00193 * 9 7 6 39 39 H 1.08999 * 109.47157 * 179.97438 * 9 7 6 40 40 H 1.09000 * 109.46739 * 55.00504 * 10 7 6 41 41 H 1.08989 * 109.47268 * 294.99800 * 10 7 6 42 42 H 1.09001 * 110.36478 * 274.97629 * 14 13 11 43 43 H 1.08998 * 110.36859 * 37.30006 * 14 13 11 44 44 H 1.08991 * 111.00552 * 278.93287 * 15 14 13 45 45 H 1.09004 * 111.03615 * 155.09334 * 15 14 13 46 46 H 0.97005 * 119.99736 * 88.52034 * 18 16 15 47 47 H 0.97008 * 120.00161 * 180.02562 * 22 21 19 48 48 H 1.09004 * 109.87531 * 300.21113 * 27 13 11 49 49 H 1.08996 * 109.88343 * 61.21833 * 27 13 11 50 50 H 1.07997 * 119.99830 * 179.72786 * 28 6 5 51 51 H 1.08004 * 119.99595 * 180.25341 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 6 2.2626 2.0725 1.1971 5 6 2.7238 3.3756 1.1971 6 6 2.9542 4.0273 0.0000 7 6 3.4565 5.4481 -0.0001 8 1 3.5780 5.7905 1.0276 9 6 4.8043 5.5126 -0.7213 10 6 2.4486 6.3453 -0.7214 11 6 2.8894 7.7825 -0.6150 12 8 3.9094 8.0616 -0.0212 13 7 2.1501 8.7576 -1.1797 14 6 0.8981 8.5599 -1.9327 15 6 0.1536 9.9142 -1.8268 16 6 1.3296 10.9232 -1.9060 17 1 1.6117 11.1060 -2.9429 18 7 0.9827 12.1774 -1.2330 19 6 0.4141 13.2009 -1.9431 20 1 0.2209 13.0834 -2.9992 21 6 0.0849 14.3890 -1.3053 22 7 0.3198 14.5320 -0.0182 23 14 -0.6902 15.7856 -2.2740 24 1 -2.1685 15.6486 -2.2432 25 1 -0.3005 17.0842 -1.6682 26 1 -0.2177 15.7340 -3.6809 27 6 2.4621 10.1941 -1.1529 28 6 2.7183 3.3775 -1.1972 29 6 2.2622 2.0727 -1.1971 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5137 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 1.8932 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 2.0830 1.5633 2.1325 36 1 2.9034 3.8849 2.1324 37 1 5.5222 4.8734 -0.2074 38 1 4.6832 5.1700 -1.7490 39 1 5.1674 6.5403 -0.7217 40 1 1.4669 6.2314 -0.2617 41 1 2.3937 6.0589 -1.7715 42 1 1.1152 8.3267 -2.9751 43 1 0.3052 7.7647 -1.4808 44 1 -0.3702 9.9987 -0.8748 45 1 -0.5338 10.0491 -2.6620 46 1 1.1558 12.2827 -0.2844 47 1 0.0895 15.3622 0.4276 48 1 2.5068 10.5444 -0.1216 49 1 3.4163 10.3755 -1.6475 50 1 2.8941 3.8881 -2.1325 51 1 2.0818 1.5637 -2.1325 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000969932983.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:41:04 Heat of formation + Delta-G solvation = -34.444481 kcal Electronic energy + Delta-G solvation = -27477.749995 eV Core-core repulsion = 23761.517693 eV Total energy + Delta-G solvation = -3716.232302 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -41.31532 -40.40247 -38.82883 -36.62565 -35.91257 -33.91655 -33.32059 -31.76824 -31.08513 -30.18470 -29.32420 -28.25231 -25.70036 -25.07317 -24.04580 -23.65871 -22.53878 -21.60491 -20.96843 -19.94497 -19.35659 -18.31162 -17.46145 -16.93273 -16.70912 -16.43452 -16.24450 -15.89970 -15.61528 -15.34905 -14.95283 -14.71172 -14.58902 -14.44588 -14.32230 -14.08411 -14.02646 -13.90302 -13.61435 -13.27522 -13.15064 -13.02424 -12.95465 -12.70366 -12.61973 -12.35244 -12.30943 -12.25356 -12.14717 -12.05487 -11.80014 -11.73791 -11.67627 -11.57801 -11.47607 -10.94535 -10.76996 -9.75873 -9.64860 -9.36069 -9.05337 -7.95405 -5.25923 0.46076 0.56485 1.48954 1.50631 1.58997 1.63761 1.97844 2.56882 2.88223 3.35280 3.47268 3.76186 3.77229 3.81733 3.93968 4.00831 4.05392 4.11449 4.21217 4.22800 4.29317 4.37604 4.41596 4.48649 4.53384 4.55797 4.63379 4.66207 4.66893 4.72010 4.75716 4.84614 4.87271 4.99964 5.04194 5.10307 5.12462 5.18027 5.21228 5.22728 5.27371 5.30390 5.39041 5.42585 5.45472 5.53310 5.60769 5.79079 5.80587 6.18074 6.24927 6.58069 7.16903 7.31160 8.03282 8.26813 9.28097 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.023125 B = 0.001935 C = 0.001862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1210.542524 B =14468.727400 C =15037.005659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.084 4.084 3 C -0.093 4.093 4 C -0.125 4.125 5 C -0.126 4.126 6 C -0.086 4.086 7 C -0.030 4.030 8 H 0.065 0.935 9 C -0.143 4.143 10 C -0.115 4.115 11 C 0.519 3.481 12 O -0.583 6.583 13 N -0.615 5.615 14 C 0.106 3.894 15 C -0.147 4.147 16 C 0.165 3.835 17 H 0.073 0.927 18 N -0.731 5.731 19 C -0.239 4.239 20 H 0.085 0.915 21 C -0.078 4.078 22 N -0.972 5.972 23 Si 0.976 3.024 24 H -0.286 1.286 25 H -0.300 1.300 26 H -0.266 1.266 27 C 0.109 3.891 28 C -0.114 4.114 29 C -0.122 4.122 30 H 0.049 0.951 31 H 0.053 0.947 32 H 0.068 0.932 33 H 0.079 0.921 34 H 0.075 0.925 35 H 0.131 0.869 36 H 0.121 0.879 37 H 0.053 0.947 38 H 0.066 0.934 39 H 0.052 0.948 40 H 0.107 0.893 41 H 0.120 0.880 42 H 0.096 0.904 43 H 0.099 0.901 44 H 0.054 0.946 45 H 0.090 0.910 46 H 0.371 0.629 47 H 0.250 0.750 48 H 0.040 0.960 49 H 0.059 0.941 50 H 0.135 0.865 51 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.376 -32.109 -4.301 32.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.121 4.121 3 C -0.093 4.093 4 C -0.143 4.143 5 C -0.144 4.144 6 C -0.086 4.086 7 C -0.049 4.049 8 H 0.084 0.916 9 C -0.200 4.200 10 C -0.155 4.155 11 C 0.310 3.690 12 O -0.464 6.464 13 N -0.349 5.349 14 C -0.016 4.016 15 C -0.187 4.187 16 C 0.055 3.945 17 H 0.091 0.909 18 N -0.371 5.371 19 C -0.371 4.371 20 H 0.103 0.897 21 C -0.270 4.270 22 N -0.622 5.622 23 Si 0.805 3.195 24 H -0.213 1.213 25 H -0.227 1.227 26 H -0.191 1.191 27 C -0.016 4.016 28 C -0.132 4.132 29 C -0.140 4.140 30 H 0.068 0.932 31 H 0.072 0.928 32 H 0.087 0.913 33 H 0.098 0.902 34 H 0.094 0.906 35 H 0.149 0.851 36 H 0.139 0.861 37 H 0.072 0.928 38 H 0.085 0.915 39 H 0.071 0.929 40 H 0.125 0.875 41 H 0.138 0.862 42 H 0.114 0.886 43 H 0.118 0.882 44 H 0.073 0.927 45 H 0.109 0.891 46 H 0.203 0.797 47 H 0.059 0.941 48 H 0.058 0.942 49 H 0.077 0.923 50 H 0.153 0.847 51 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 1.893 -31.912 -4.121 32.233 hybrid contribution -0.151 1.583 0.551 1.683 sum 1.743 -30.329 -3.570 30.588 Atomic orbital electron populations 1.21735 0.94415 1.02273 1.01852 1.20572 0.96364 0.91673 1.03481 1.20169 0.98868 0.97162 0.93123 1.21196 1.00011 0.94677 0.98410 1.21226 0.99993 0.95415 0.97813 1.19790 0.99874 0.95096 0.93847 1.19767 0.94603 0.90460 1.00103 0.91647 1.21886 0.95842 1.02012 1.00306 1.21730 1.01013 0.88032 1.04702 1.21062 0.82557 0.88145 0.77208 1.90654 1.26764 1.84504 1.44464 1.48632 1.26008 1.06091 1.54181 1.22546 0.83462 0.98280 0.97320 1.23373 0.98584 0.94312 1.02463 1.21396 0.92112 0.85443 0.95523 0.90914 1.42562 1.73422 1.12192 1.08895 1.19662 1.30961 0.92871 0.93599 0.89740 1.25625 1.03540 1.00967 0.96872 1.69840 1.55264 1.26895 1.10225 0.85102 0.77990 0.78316 0.78102 1.21314 1.22703 1.19081 1.21995 0.98714 0.81071 0.99822 1.21164 0.99225 0.95025 0.97777 1.21261 0.99680 0.94782 0.98263 0.93183 0.92784 0.91335 0.90204 0.90608 0.85132 0.86088 0.92789 0.91512 0.92880 0.87474 0.86236 0.88600 0.88231 0.92727 0.89148 0.79701 0.94096 0.94166 0.92250 0.84722 0.84481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 9.89 71.98 0.71 -0.62 16 2 C -0.08 -0.81 6.06 29.85 0.18 -0.63 16 3 C -0.09 -1.30 5.13 -19.87 -0.10 -1.40 16 4 C -0.13 -1.93 9.70 22.27 0.22 -1.72 16 5 C -0.13 -2.24 9.67 22.27 0.22 -2.03 16 6 C -0.09 -1.53 4.78 -19.87 -0.09 -1.62 16 7 C -0.03 -0.62 2.21 -11.54 -0.03 -0.65 16 8 H 0.07 1.60 7.69 -2.39 -0.02 1.58 16 9 C -0.14 -3.05 8.75 71.98 0.63 -2.42 16 10 C -0.12 -2.22 3.92 29.85 0.12 -2.11 16 11 C 0.52 15.02 7.57 87.66 0.66 15.69 16 12 O -0.58 -21.69 14.29 -3.02 -0.04 -21.73 16 13 N -0.62 -17.84 3.33 -811.80 -2.70 -20.55 16 14 C 0.11 2.31 6.69 86.86 0.58 2.89 16 15 C -0.15 -4.39 6.77 31.99 0.22 -4.17 16 16 C 0.16 6.18 3.61 46.18 0.17 6.34 16 17 H 0.07 2.64 8.09 -2.39 -0.02 2.62 16 18 N -0.73 -36.18 5.22 -317.33 -1.66 -37.84 16 19 C -0.24 -12.84 9.96 84.03 0.84 -12.01 16 20 H 0.08 4.24 7.83 -2.91 -0.02 4.22 16 21 C -0.08 -4.41 5.50 84.86 0.47 -3.94 16 22 N -0.97 -59.56 13.06 21.65 0.28 -59.27 16 23 Si 0.98 45.33 29.55 68.60 2.03 47.35 16 24 H -0.29 -13.01 7.11 99.48 0.71 -12.30 16 25 H -0.30 -14.26 7.11 99.48 0.71 -13.55 16 26 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 27 C 0.11 3.91 6.62 86.73 0.57 4.49 16 28 C -0.11 -1.70 8.76 22.27 0.20 -1.51 16 29 C -0.12 -1.66 9.70 22.27 0.22 -1.45 16 30 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 31 H 0.05 0.52 8.14 -2.39 -0.02 0.51 16 32 H 0.07 0.47 8.14 -2.39 -0.02 0.45 16 33 H 0.08 0.63 8.09 -2.39 -0.02 0.61 16 34 H 0.08 0.65 8.09 -2.39 -0.02 0.63 16 35 H 0.13 1.60 8.06 -2.91 -0.02 1.58 16 36 H 0.12 2.04 7.95 -2.91 -0.02 2.02 16 37 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 38 H 0.07 1.15 7.41 -2.39 -0.02 1.14 16 39 H 0.05 1.44 5.95 -2.39 -0.01 1.43 16 40 H 0.11 1.80 7.85 -2.39 -0.02 1.79 16 41 H 0.12 1.68 7.55 -2.39 -0.02 1.66 16 42 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 43 H 0.10 1.65 7.48 -2.39 -0.02 1.63 16 44 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 45 H 0.09 2.47 8.14 -2.39 -0.02 2.45 16 46 H 0.37 20.32 7.56 -92.70 -0.70 19.62 16 47 H 0.25 14.93 8.31 -92.70 -0.77 14.16 16 48 H 0.04 1.68 7.72 -2.38 -0.02 1.66 16 49 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 50 H 0.13 1.57 7.16 -2.91 -0.02 1.55 16 51 H 0.14 1.32 8.06 -2.91 -0.02 1.29 16 Total: -1.00 -69.71 408.06 3.87 -65.83 By element: Atomic # 1 Polarization: 32.86 SS G_CDS: 0.20 Total: 33.06 kcal Atomic # 6 Polarization: -12.62 SS G_CDS: 5.77 Total: -6.86 kcal Atomic # 7 Polarization: -113.58 SS G_CDS: -4.07 Total: -117.66 kcal Atomic # 8 Polarization: -21.69 SS G_CDS: -0.04 Total: -21.73 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 2.03 Total: 47.35 kcal Total: -69.71 3.87 -65.83 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969932983.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.390 kcal (2) G-P(sol) polarization free energy of solvation -69.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.835 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds