Wall clock time and date at job start Tue Mar 31 2020 16:19:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50698 * 109.47091 * 2 1 4 4 C 1.38225 * 120.00206 * 90.00591 * 3 2 1 5 5 C 1.38237 * 120.00318 * 179.97438 * 4 3 2 6 6 C 1.38229 * 120.00033 * 359.95204 * 5 4 3 7 7 C 1.50701 * 120.00502 * 179.97438 * 6 5 4 8 8 C 1.53005 * 109.46570 * 53.37645 * 7 6 5 9 9 C 1.52996 * 109.47217 * 293.37963 * 7 6 5 10 10 C 1.50698 * 109.47338 * 173.37269 * 7 6 5 11 11 O 1.21284 * 119.99559 * 120.48661 * 10 7 6 12 12 N 1.34772 * 120.00098 * 300.49223 * 10 7 6 13 13 C 1.47426 * 125.64951 * 355.81534 * 12 10 7 14 14 C 1.54904 * 104.82946 * 156.14171 * 13 12 10 15 15 C 1.55155 * 101.58563 * 37.01215 * 14 13 12 16 16 H 1.09001 * 110.72130 * 82.85904 * 15 14 13 17 17 N 1.46504 * 110.87580 * 206.06392 * 15 14 13 18 18 C 1.36939 * 119.99987 * 268.61018 * 17 15 14 19 19 H 1.08001 * 119.99489 * 359.97438 * 18 17 15 20 20 C 1.38809 * 119.99925 * 179.97438 * 18 17 15 21 21 N 1.31615 * 119.99895 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 119.99837 * 180.02562 * 20 18 17 23 23 H 1.48495 * 109.47236 * 60.00132 * 22 20 18 24 24 H 1.48496 * 109.46986 * 180.02562 * 22 20 18 25 25 H 1.48499 * 109.47185 * 299.99848 * 22 20 18 26 26 C 1.47022 * 125.64615 * 176.13438 * 12 10 7 27 27 C 1.38238 * 119.99869 * 0.28153 * 6 5 4 28 28 C 1.38236 * 119.99934 * 269.97699 * 3 2 1 29 29 H 1.09003 * 109.46794 * 299.99502 * 1 2 3 30 30 H 1.08996 * 109.47514 * 59.99680 * 1 2 3 31 31 H 1.09006 * 109.47189 * 180.02562 * 1 2 3 32 32 H 1.09008 * 109.46447 * 240.00187 * 2 1 3 33 33 H 1.08996 * 109.47514 * 120.00320 * 2 1 3 34 34 H 1.08005 * 120.00022 * 359.97438 * 4 3 2 35 35 H 1.08002 * 120.00256 * 179.97438 * 5 4 3 36 36 H 1.09004 * 109.46849 * 171.28443 * 8 7 6 37 37 H 1.08997 * 109.46967 * 291.28496 * 8 7 6 38 38 H 1.08996 * 109.46936 * 51.28353 * 8 7 6 39 39 H 1.09005 * 109.46845 * 299.99526 * 9 7 6 40 40 H 1.09000 * 109.47182 * 59.99643 * 9 7 6 41 41 H 1.08997 * 109.47250 * 179.97438 * 9 7 6 42 42 H 1.08998 * 110.36951 * 274.97880 * 13 12 10 43 43 H 1.08996 * 110.36480 * 37.30548 * 13 12 10 44 44 H 1.09007 * 111.00615 * 278.93692 * 14 13 12 45 45 H 1.09003 * 111.00901 * 155.08642 * 14 13 12 46 46 H 0.96993 * 119.99953 * 88.60604 * 17 15 14 47 47 H 0.97003 * 119.99541 * 179.97438 * 21 20 18 48 48 H 1.09011 * 109.88172 * 300.20475 * 26 12 10 49 49 H 1.09001 * 109.88730 * 61.21354 * 26 12 10 50 50 H 1.08003 * 120.00202 * 179.72794 * 27 6 5 51 51 H 1.08008 * 120.00324 * 0.02562 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2628 2.0724 1.1970 5 6 2.7240 3.3755 1.1971 6 6 2.9558 4.0267 0.0000 7 6 3.4581 5.4475 -0.0001 8 6 4.7187 5.5427 0.8618 9 6 2.3792 6.3700 0.5707 10 6 3.7817 5.8659 -1.4112 11 8 3.2122 6.8145 -1.9081 12 7 4.7037 5.1859 -2.1210 13 6 5.5297 4.0746 -1.6149 14 6 5.9295 3.2708 -2.8773 15 6 6.1395 4.4049 -3.9152 16 1 7.1353 4.8373 -3.8178 17 7 5.9212 3.9126 -5.2777 18 6 6.9726 3.4226 -6.0053 19 1 7.9629 3.3994 -5.5749 20 6 6.7657 2.9557 -7.2961 21 7 5.5588 2.9836 -7.8203 22 14 8.1999 2.2865 -8.2884 23 1 8.7945 1.1259 -7.5782 24 1 7.7184 1.8556 -9.6254 25 1 9.2269 3.3467 -8.4508 26 6 5.0571 5.4339 -3.5265 27 6 2.7207 3.3767 -1.1972 28 6 2.2631 2.0723 -1.1972 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 1.8932 -0.5139 -0.8901 33 1 1.8933 -0.5138 0.8899 34 1 2.0825 1.5634 2.1324 35 1 2.9038 3.8848 2.1324 36 1 5.1690 6.5278 0.7393 37 1 4.4553 5.3912 1.9086 38 1 5.4296 4.7770 0.5515 39 1 1.4811 6.3021 -0.0434 40 1 2.1452 6.0673 1.5914 41 1 2.7427 7.3975 0.5710 42 1 6.4176 4.4596 -1.1134 43 1 4.9500 3.4500 -0.9354 44 1 5.1254 2.6027 -3.1860 45 1 6.8535 2.7170 -2.7116 46 1 5.0319 3.9338 -5.6643 47 1 5.4143 2.6576 -8.7225 48 1 4.1782 5.3040 -4.1582 49 1 5.4471 6.4456 -3.6378 50 1 2.8975 3.8870 -2.1325 51 1 2.0831 1.5632 -2.1326 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970434812.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:19:46 Heat of formation + Delta-G solvation = -2.659177 kcal Electronic energy + Delta-G solvation = -29449.522974 eV Core-core repulsion = 25734.668986 eV Total energy + Delta-G solvation = -3714.853988 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.02386 -39.03389 -37.46551 -35.81346 -34.10910 -33.24434 -31.54639 -30.93543 -29.52365 -28.88165 -28.08276 -27.06401 -24.82299 -23.94068 -23.13976 -22.66581 -21.70139 -20.61747 -20.01613 -18.76299 -17.39907 -17.34387 -16.25746 -15.92029 -15.43068 -15.23643 -14.75231 -14.61201 -14.25519 -13.92058 -13.74994 -13.69063 -13.49499 -13.44321 -13.25071 -13.14686 -12.72380 -12.63416 -12.51204 -12.29493 -12.00357 -11.84108 -11.82136 -11.66055 -11.50976 -11.36064 -11.18378 -11.11609 -10.91148 -10.82709 -10.72522 -10.67414 -10.32577 -10.12306 -9.77121 -9.53276 -8.98636 -8.92114 -8.55378 -8.35015 -7.05571 -5.83155 -3.13708 1.23064 1.36498 2.75353 3.15490 3.40549 3.45396 3.46266 3.65495 4.37803 4.44583 4.53768 4.67763 4.75882 4.87665 4.92216 4.98670 5.07387 5.09690 5.18607 5.30218 5.35990 5.38618 5.40938 5.44612 5.46612 5.55558 5.59772 5.64744 5.69051 5.71640 5.73592 5.78973 5.82002 5.91655 5.96078 5.99251 6.02996 6.04734 6.14660 6.16329 6.26603 6.37511 6.39351 6.51553 6.58003 6.59715 6.62307 6.89656 6.93615 7.63614 7.74173 8.31649 8.34748 9.45696 9.99951 10.34727 11.38943 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.011374 B = 0.003559 C = 0.002949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2461.062367 B = 7865.379043 C = 9493.978842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.086 4.086 3 C -0.082 4.082 4 C -0.119 4.119 5 C -0.107 4.107 6 C -0.079 4.079 7 C -0.037 4.037 8 C -0.145 4.145 9 C -0.122 4.122 10 C 0.537 3.463 11 O -0.542 6.542 12 N -0.608 5.608 13 C 0.090 3.910 14 C -0.154 4.154 15 C 0.173 3.827 16 H 0.066 0.934 17 N -0.714 5.714 18 C -0.246 4.246 19 H 0.072 0.928 20 C -0.009 4.009 21 N -0.930 5.930 22 Si 0.908 3.092 23 H -0.285 1.285 24 H -0.291 1.291 25 H -0.285 1.285 26 C 0.098 3.902 27 C -0.106 4.106 28 C -0.110 4.110 29 H 0.054 0.946 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.073 0.927 33 H 0.070 0.930 34 H 0.119 0.881 35 H 0.121 0.879 36 H 0.063 0.937 37 H 0.067 0.933 38 H 0.070 0.930 39 H 0.063 0.937 40 H 0.061 0.939 41 H 0.065 0.935 42 H 0.064 0.936 43 H 0.080 0.920 44 H 0.074 0.926 45 H 0.074 0.926 46 H 0.386 0.614 47 H 0.257 0.743 48 H 0.069 0.931 49 H 0.065 0.935 50 H 0.129 0.871 51 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.578 -1.799 22.344 23.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.123 4.123 3 C -0.082 4.082 4 C -0.137 4.137 5 C -0.125 4.125 6 C -0.079 4.079 7 C -0.040 4.040 8 C -0.202 4.202 9 C -0.179 4.179 10 C 0.325 3.675 11 O -0.419 6.419 12 N -0.342 5.342 13 C -0.033 4.033 14 C -0.195 4.195 15 C 0.061 3.939 16 H 0.083 0.917 17 N -0.355 5.355 18 C -0.377 4.377 19 H 0.090 0.910 20 C -0.205 4.205 21 N -0.578 5.578 22 Si 0.739 3.261 23 H -0.212 1.212 24 H -0.217 1.217 25 H -0.212 1.212 26 C -0.025 4.025 27 C -0.124 4.124 28 C -0.128 4.128 29 H 0.073 0.927 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.091 0.909 33 H 0.088 0.912 34 H 0.137 0.863 35 H 0.139 0.861 36 H 0.082 0.918 37 H 0.086 0.914 38 H 0.089 0.911 39 H 0.082 0.918 40 H 0.080 0.920 41 H 0.084 0.916 42 H 0.082 0.918 43 H 0.098 0.902 44 H 0.093 0.907 45 H 0.093 0.907 46 H 0.220 0.780 47 H 0.067 0.933 48 H 0.087 0.913 49 H 0.083 0.917 50 H 0.146 0.854 51 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -6.779 -1.296 21.984 23.042 hybrid contribution 0.545 -0.442 -0.788 1.055 sum -6.234 -1.738 21.196 22.162 Atomic orbital electron populations 1.21744 0.94799 1.01610 1.02212 1.20548 0.96126 0.92750 1.02897 1.19907 0.98946 0.96217 0.93173 1.20923 1.00649 0.94778 0.97387 1.20834 0.99896 0.94706 0.97107 1.19469 1.00677 0.94046 0.93698 1.19717 0.97609 0.93372 0.93274 1.22033 0.95815 1.03032 0.99314 1.21661 0.97583 0.98625 1.00051 1.19985 0.78532 0.82029 0.86997 1.90695 1.51791 1.27951 1.71479 1.48485 1.38030 1.34627 1.13014 1.22693 0.94183 0.88236 0.98206 1.23552 1.01947 0.99378 0.94615 1.21170 0.95557 0.90818 0.86355 0.91651 1.42342 1.09501 1.73718 1.09891 1.19177 0.89247 1.33927 0.95338 0.91037 1.24756 0.96619 1.01799 0.97350 1.69654 1.19814 1.52246 1.16038 0.86257 0.81576 0.78822 0.79439 1.21186 1.21658 1.21181 1.22359 0.99495 0.99912 0.80732 1.21370 0.97844 0.95104 0.98061 1.21060 0.99328 0.94684 0.97761 0.92702 0.92451 0.92480 0.90856 0.91166 0.86262 0.86080 0.91818 0.91355 0.91077 0.91806 0.91989 0.91595 0.91819 0.90200 0.90700 0.90698 0.77979 0.93312 0.91264 0.91694 0.85373 0.85885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 9.89 37.15 0.37 -0.79 16 2 C -0.09 -0.74 6.06 -27.89 -0.17 -0.91 16 3 C -0.08 -0.87 5.13 -104.63 -0.54 -1.40 16 4 C -0.12 -1.15 9.70 -39.59 -0.38 -1.53 16 5 C -0.11 -1.06 8.82 -39.59 -0.35 -1.41 16 6 C -0.08 -0.93 3.34 -104.62 -0.35 -1.28 16 7 C -0.04 -0.44 0.59 -156.81 -0.09 -0.53 16 8 C -0.14 -1.40 7.74 37.16 0.29 -1.11 16 9 C -0.12 -1.37 7.63 37.16 0.28 -1.08 16 10 C 0.54 8.47 5.25 -10.99 -0.06 8.41 16 11 O -0.54 -10.49 16.31 5.55 0.09 -10.39 16 12 N -0.61 -9.40 2.22 -170.52 -0.38 -9.77 16 13 C 0.09 1.21 4.37 -2.53 -0.01 1.20 16 14 C -0.15 -2.49 6.77 -24.59 -0.17 -2.66 16 15 C 0.17 3.28 3.61 -66.09 -0.24 3.04 16 16 H 0.07 1.24 8.09 -51.93 -0.42 0.82 16 17 N -0.71 -17.25 5.23 -51.65 -0.27 -17.52 16 18 C -0.25 -6.58 9.96 -15.06 -0.15 -6.73 16 19 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 20 C -0.01 -0.24 5.50 -17.43 -0.10 -0.34 16 21 N -0.93 -27.53 13.06 55.49 0.72 -26.81 16 22 Si 0.91 21.86 29.55 -169.99 -5.02 16.84 16 23 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 24 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 25 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 26 C 0.10 1.75 6.62 -3.06 -0.02 1.73 16 27 C -0.11 -1.42 6.97 -39.58 -0.28 -1.69 16 28 C -0.11 -1.36 9.70 -39.58 -0.38 -1.74 16 29 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 31 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 32 H 0.07 0.64 8.09 -51.92 -0.42 0.22 16 33 H 0.07 0.52 8.09 -51.93 -0.42 0.10 16 34 H 0.12 0.90 8.06 -52.48 -0.42 0.47 16 35 H 0.12 0.94 7.26 -52.49 -0.38 0.56 16 36 H 0.06 0.63 8.12 -51.93 -0.42 0.21 16 37 H 0.07 0.51 7.38 -51.93 -0.38 0.13 16 38 H 0.07 0.68 5.18 -51.93 -0.27 0.41 16 39 H 0.06 0.81 8.10 -51.93 -0.42 0.39 16 40 H 0.06 0.54 7.81 -51.93 -0.41 0.13 16 41 H 0.07 0.75 8.09 -51.93 -0.42 0.33 16 42 H 0.06 0.77 7.43 -51.93 -0.39 0.38 16 43 H 0.08 1.01 4.42 -51.93 -0.23 0.78 16 44 H 0.07 1.33 8.14 -51.93 -0.42 0.90 16 45 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 46 H 0.39 10.04 7.56 -40.82 -0.31 9.73 16 47 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 48 H 0.07 1.35 7.72 -51.92 -0.40 0.95 16 49 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 50 H 0.13 2.01 5.71 -52.48 -0.30 1.71 16 51 H 0.12 1.48 8.06 -52.48 -0.42 1.06 16 LS Contribution 395.51 15.07 5.96 5.96 Total: -1.00 -30.83 395.51 -9.75 -40.58 By element: Atomic # 1 Polarization: 18.45 SS G_CDS: -8.51 Total: 9.93 kcal Atomic # 6 Polarization: -6.48 SS G_CDS: -2.34 Total: -8.82 kcal Atomic # 7 Polarization: -54.17 SS G_CDS: 0.08 Total: -54.10 kcal Atomic # 8 Polarization: -10.49 SS G_CDS: 0.09 Total: -10.39 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -30.83 -9.75 -40.58 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970434812.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.924 kcal (2) G-P(sol) polarization free energy of solvation -30.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds