Wall clock time and date at job start Tue Mar 31 2020 16:19:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50698 * 109.47091 * 2 1 4 4 C 1.38225 * 120.00206 * 90.00591 * 3 2 1 5 5 C 1.38237 * 120.00318 * 179.97438 * 4 3 2 6 6 C 1.38229 * 120.00033 * 359.95204 * 5 4 3 7 7 C 1.50701 * 120.00502 * 179.97438 * 6 5 4 8 8 C 1.53005 * 109.46570 * 53.37645 * 7 6 5 9 9 C 1.52996 * 109.47217 * 293.37963 * 7 6 5 10 10 C 1.50698 * 109.47338 * 173.37269 * 7 6 5 11 11 O 1.21284 * 119.99559 * 120.48661 * 10 7 6 12 12 N 1.34772 * 120.00098 * 300.49223 * 10 7 6 13 13 C 1.47426 * 125.64951 * 355.81534 * 12 10 7 14 14 C 1.54904 * 104.82946 * 156.14171 * 13 12 10 15 15 C 1.55155 * 101.58563 * 37.01215 * 14 13 12 16 16 H 1.09001 * 110.72130 * 82.85904 * 15 14 13 17 17 N 1.46504 * 110.87580 * 206.06392 * 15 14 13 18 18 C 1.36939 * 119.99987 * 268.61018 * 17 15 14 19 19 H 1.08001 * 119.99489 * 359.97438 * 18 17 15 20 20 C 1.38809 * 119.99925 * 179.97438 * 18 17 15 21 21 N 1.31615 * 119.99895 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 119.99837 * 180.02562 * 20 18 17 23 23 H 1.48495 * 109.47236 * 60.00132 * 22 20 18 24 24 H 1.48496 * 109.46986 * 180.02562 * 22 20 18 25 25 H 1.48499 * 109.47185 * 299.99848 * 22 20 18 26 26 C 1.47022 * 125.64615 * 176.13438 * 12 10 7 27 27 C 1.38238 * 119.99869 * 0.28153 * 6 5 4 28 28 C 1.38236 * 119.99934 * 269.97699 * 3 2 1 29 29 H 1.09003 * 109.46794 * 299.99502 * 1 2 3 30 30 H 1.08996 * 109.47514 * 59.99680 * 1 2 3 31 31 H 1.09006 * 109.47189 * 180.02562 * 1 2 3 32 32 H 1.09008 * 109.46447 * 240.00187 * 2 1 3 33 33 H 1.08996 * 109.47514 * 120.00320 * 2 1 3 34 34 H 1.08005 * 120.00022 * 359.97438 * 4 3 2 35 35 H 1.08002 * 120.00256 * 179.97438 * 5 4 3 36 36 H 1.09004 * 109.46849 * 171.28443 * 8 7 6 37 37 H 1.08997 * 109.46967 * 291.28496 * 8 7 6 38 38 H 1.08996 * 109.46936 * 51.28353 * 8 7 6 39 39 H 1.09005 * 109.46845 * 299.99526 * 9 7 6 40 40 H 1.09000 * 109.47182 * 59.99643 * 9 7 6 41 41 H 1.08997 * 109.47250 * 179.97438 * 9 7 6 42 42 H 1.08998 * 110.36951 * 274.97880 * 13 12 10 43 43 H 1.08996 * 110.36480 * 37.30548 * 13 12 10 44 44 H 1.09007 * 111.00615 * 278.93692 * 14 13 12 45 45 H 1.09003 * 111.00901 * 155.08642 * 14 13 12 46 46 H 0.96993 * 119.99953 * 88.60604 * 17 15 14 47 47 H 0.97003 * 119.99541 * 179.97438 * 21 20 18 48 48 H 1.09011 * 109.88172 * 300.20475 * 26 12 10 49 49 H 1.09001 * 109.88730 * 61.21354 * 26 12 10 50 50 H 1.08003 * 120.00202 * 179.72794 * 27 6 5 51 51 H 1.08008 * 120.00324 * 0.02562 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2628 2.0724 1.1970 5 6 2.7240 3.3755 1.1971 6 6 2.9558 4.0267 0.0000 7 6 3.4581 5.4475 -0.0001 8 6 4.7187 5.5427 0.8618 9 6 2.3792 6.3700 0.5707 10 6 3.7817 5.8659 -1.4112 11 8 3.2122 6.8145 -1.9081 12 7 4.7037 5.1859 -2.1210 13 6 5.5297 4.0746 -1.6149 14 6 5.9295 3.2708 -2.8773 15 6 6.1395 4.4049 -3.9152 16 1 7.1353 4.8373 -3.8178 17 7 5.9212 3.9126 -5.2777 18 6 6.9726 3.4226 -6.0053 19 1 7.9629 3.3994 -5.5749 20 6 6.7657 2.9557 -7.2961 21 7 5.5588 2.9836 -7.8203 22 14 8.1999 2.2865 -8.2884 23 1 8.7945 1.1259 -7.5782 24 1 7.7184 1.8556 -9.6254 25 1 9.2269 3.3467 -8.4508 26 6 5.0571 5.4339 -3.5265 27 6 2.7207 3.3767 -1.1972 28 6 2.2631 2.0723 -1.1972 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 1.8932 -0.5139 -0.8901 33 1 1.8933 -0.5138 0.8899 34 1 2.0825 1.5634 2.1324 35 1 2.9038 3.8848 2.1324 36 1 5.1690 6.5278 0.7393 37 1 4.4553 5.3912 1.9086 38 1 5.4296 4.7770 0.5515 39 1 1.4811 6.3021 -0.0434 40 1 2.1452 6.0673 1.5914 41 1 2.7427 7.3975 0.5710 42 1 6.4176 4.4596 -1.1134 43 1 4.9500 3.4500 -0.9354 44 1 5.1254 2.6027 -3.1860 45 1 6.8535 2.7170 -2.7116 46 1 5.0319 3.9338 -5.6643 47 1 5.4143 2.6576 -8.7225 48 1 4.1782 5.3040 -4.1582 49 1 5.4471 6.4456 -3.6378 50 1 2.8975 3.8870 -2.1325 51 1 2.0831 1.5632 -2.1326 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000970434812.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:19:45 Heat of formation + Delta-G solvation = -18.865901 kcal Electronic energy + Delta-G solvation = -29450.225750 eV Core-core repulsion = 25734.668986 eV Total energy + Delta-G solvation = -3715.556764 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.13072 -40.05910 -38.87603 -36.80435 -35.91190 -34.02833 -33.30316 -31.85683 -31.04431 -29.68143 -29.52704 -28.00976 -26.18330 -25.14461 -24.54843 -23.64878 -22.64526 -21.68781 -21.45045 -19.91027 -19.36631 -18.45291 -17.43816 -17.15462 -16.69909 -16.26190 -16.12011 -15.71259 -15.46081 -15.35260 -15.00992 -14.74011 -14.60495 -14.51383 -14.30716 -14.06922 -14.05249 -13.74313 -13.45120 -13.33902 -13.20452 -13.10650 -12.98202 -12.84300 -12.67954 -12.62564 -12.38749 -12.28562 -12.16239 -12.14638 -12.00288 -11.74815 -11.71591 -11.67784 -11.51629 -10.94679 -10.80661 -9.79984 -9.69908 -9.39490 -9.06286 -7.95909 -5.26638 0.37897 0.50290 1.48136 1.51000 1.51527 1.57100 1.89756 2.56126 2.80502 3.28739 3.38714 3.55882 3.71334 3.78058 3.93178 3.94219 4.01025 4.03189 4.12307 4.17782 4.24897 4.32857 4.35590 4.48354 4.51745 4.56741 4.62303 4.65525 4.71525 4.73677 4.80806 4.84868 4.88288 4.91155 4.96268 5.04745 5.10022 5.14327 5.15831 5.19241 5.21289 5.23366 5.32053 5.38913 5.40155 5.51503 5.54446 5.64521 5.76015 6.10295 6.23842 6.48762 7.04932 7.30423 8.01534 8.25934 9.27409 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.011374 B = 0.003559 C = 0.002949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2461.062367 B = 7865.379043 C = 9493.978842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.086 4.086 3 C -0.083 4.083 4 C -0.113 4.113 5 C -0.097 4.097 6 C -0.084 4.084 7 C -0.029 4.029 8 C -0.143 4.143 9 C -0.120 4.120 10 C 0.530 3.470 11 O -0.588 6.588 12 N -0.605 5.605 13 C 0.101 3.899 14 C -0.143 4.143 15 C 0.169 3.831 16 H 0.073 0.927 17 N -0.729 5.729 18 C -0.242 4.242 19 H 0.084 0.916 20 C -0.074 4.074 21 N -0.971 5.971 22 Si 0.975 3.025 23 H -0.274 1.274 24 H -0.299 1.299 25 H -0.277 1.277 26 C 0.108 3.892 27 C -0.127 4.127 28 C -0.129 4.129 29 H 0.061 0.939 30 H 0.040 0.960 31 H 0.069 0.931 32 H 0.065 0.935 33 H 0.091 0.909 34 H 0.152 0.848 35 H 0.155 0.845 36 H 0.060 0.940 37 H 0.101 0.899 38 H 0.073 0.927 39 H 0.039 0.961 40 H 0.097 0.903 41 H 0.060 0.940 42 H 0.093 0.907 43 H 0.095 0.905 44 H 0.053 0.947 45 H 0.088 0.912 46 H 0.371 0.629 47 H 0.251 0.749 48 H 0.040 0.960 49 H 0.060 0.940 50 H 0.093 0.907 51 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.317 -2.910 26.683 27.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.123 4.123 3 C -0.083 4.083 4 C -0.131 4.131 5 C -0.114 4.114 6 C -0.084 4.084 7 C -0.032 4.032 8 C -0.200 4.200 9 C -0.177 4.177 10 C 0.321 3.679 11 O -0.468 6.468 12 N -0.338 5.338 13 C -0.020 4.020 14 C -0.183 4.183 15 C 0.059 3.941 16 H 0.091 0.909 17 N -0.368 5.368 18 C -0.374 4.374 19 H 0.102 0.898 20 C -0.266 4.266 21 N -0.622 5.622 22 Si 0.804 3.196 23 H -0.200 1.200 24 H -0.226 1.226 25 H -0.203 1.203 26 C -0.017 4.017 27 C -0.146 4.146 28 C -0.147 4.147 29 H 0.080 0.920 30 H 0.059 0.941 31 H 0.088 0.912 32 H 0.084 0.916 33 H 0.109 0.891 34 H 0.169 0.831 35 H 0.173 0.827 36 H 0.079 0.921 37 H 0.120 0.880 38 H 0.092 0.908 39 H 0.058 0.942 40 H 0.116 0.884 41 H 0.079 0.921 42 H 0.111 0.889 43 H 0.113 0.887 44 H 0.072 0.928 45 H 0.107 0.893 46 H 0.203 0.797 47 H 0.059 0.941 48 H 0.059 0.941 49 H 0.079 0.921 50 H 0.111 0.889 51 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -5.480 -2.413 26.392 27.062 hybrid contribution 0.082 -0.076 -2.084 2.087 sum -5.398 -2.489 24.308 25.024 Atomic orbital electron populations 1.21729 0.94345 1.02345 1.01759 1.20595 0.96451 0.91673 1.03555 1.20143 0.98269 0.97080 0.92831 1.21307 0.99054 0.94698 0.98016 1.21152 0.98323 0.94717 0.97257 1.19457 1.01324 0.93763 0.93879 1.19751 0.99255 0.93608 0.90596 1.22080 0.94263 1.03060 1.00553 1.21684 0.96231 0.98354 1.01443 1.20891 0.77372 0.81148 0.88537 1.90665 1.53141 1.30140 1.72856 1.48504 1.38408 1.35048 1.11800 1.22759 0.95022 0.87329 0.96932 1.23343 1.01885 0.98298 0.94815 1.21342 0.95992 0.91973 0.84743 0.90914 1.42515 1.08336 1.74172 1.11806 1.19618 0.90124 1.32190 0.95456 0.89847 1.25589 0.99005 1.03217 0.98761 1.69833 1.22020 1.54271 1.16029 0.85194 0.78587 0.78463 0.77398 1.20006 1.22570 1.20341 1.22036 0.97980 0.99358 0.82299 1.21155 1.00110 0.95731 0.97558 1.21052 1.00567 0.94634 0.98419 0.91987 0.94054 0.91193 0.91627 0.89084 0.83052 0.82694 0.92076 0.88004 0.90764 0.94196 0.88438 0.92130 0.88941 0.88651 0.92827 0.89331 0.79717 0.94067 0.94120 0.92123 0.88927 0.87285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.05 9.89 71.98 0.71 -1.34 16 2 C -0.09 -1.30 6.06 29.85 0.18 -1.12 16 3 C -0.08 -1.60 5.13 -19.87 -0.10 -1.70 16 4 C -0.11 -1.71 9.70 22.27 0.22 -1.49 16 5 C -0.10 -1.49 8.82 22.27 0.20 -1.30 16 6 C -0.08 -1.82 3.34 -19.87 -0.07 -1.88 16 7 C -0.03 -0.65 0.59 -53.67 -0.03 -0.68 16 8 C -0.14 -2.21 7.74 71.98 0.56 -1.65 16 9 C -0.12 -2.48 7.63 71.98 0.55 -1.93 16 10 C 0.53 17.05 5.25 87.66 0.46 17.51 16 11 O -0.59 -23.90 16.31 -3.04 -0.05 -23.95 16 12 N -0.61 -19.05 2.22 -811.80 -1.80 -20.85 16 13 C 0.10 2.60 4.37 86.85 0.38 2.98 16 14 C -0.14 -4.60 6.77 31.98 0.22 -4.39 16 15 C 0.17 6.57 3.61 46.18 0.17 6.73 16 16 H 0.07 2.73 8.09 -2.39 -0.02 2.71 16 17 N -0.73 -36.58 5.23 -317.32 -1.66 -38.24 16 18 C -0.24 -13.14 9.96 84.03 0.84 -12.30 16 19 H 0.08 4.23 7.83 -2.91 -0.02 4.21 16 20 C -0.07 -4.17 5.50 84.86 0.47 -3.71 16 21 N -0.97 -59.73 13.06 21.65 0.28 -59.45 16 22 Si 0.97 45.52 29.55 68.60 2.03 47.55 16 23 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 24 H -0.30 -14.26 7.11 99.48 0.71 -13.56 16 25 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 26 C 0.11 4.06 6.62 86.73 0.57 4.63 16 27 C -0.13 -3.48 6.97 22.27 0.16 -3.33 16 28 C -0.13 -3.23 9.70 22.27 0.22 -3.02 16 29 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.04 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.07 0.81 8.14 -2.38 -0.02 0.79 16 32 H 0.07 1.09 8.09 -2.38 -0.02 1.07 16 33 H 0.09 1.03 8.09 -2.39 -0.02 1.01 16 34 H 0.15 1.38 8.06 -2.91 -0.02 1.35 16 35 H 0.16 1.38 7.26 -2.91 -0.02 1.36 16 36 H 0.06 1.01 8.12 -2.38 -0.02 0.99 16 37 H 0.10 0.94 7.38 -2.39 -0.02 0.92 16 38 H 0.07 1.11 5.18 -2.39 -0.01 1.10 16 39 H 0.04 1.00 8.10 -2.38 -0.02 0.98 16 40 H 0.10 1.30 7.81 -2.39 -0.02 1.28 16 41 H 0.06 1.31 8.09 -2.39 -0.02 1.29 16 42 H 0.09 1.92 7.43 -2.39 -0.02 1.90 16 43 H 0.10 2.24 4.42 -2.39 -0.01 2.23 16 44 H 0.05 1.97 8.14 -2.38 -0.02 1.95 16 45 H 0.09 2.63 8.14 -2.39 -0.02 2.61 16 46 H 0.37 20.56 7.56 -92.71 -0.70 19.86 16 47 H 0.25 15.03 8.31 -92.71 -0.77 14.26 16 48 H 0.04 1.75 7.72 -2.38 -0.02 1.73 16 49 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 50 H 0.09 3.16 5.71 -2.91 -0.02 3.15 16 51 H 0.11 2.90 8.06 -2.91 -0.02 2.88 16 Total: -1.00 -71.04 395.51 4.70 -66.34 By element: Atomic # 1 Polarization: 36.38 SS G_CDS: 0.21 Total: 36.59 kcal Atomic # 6 Polarization: -13.67 SS G_CDS: 5.68 Total: -7.99 kcal Atomic # 7 Polarization: -115.37 SS G_CDS: -3.18 Total: -118.54 kcal Atomic # 8 Polarization: -23.90 SS G_CDS: -0.05 Total: -23.95 kcal Atomic # 14 Polarization: 45.52 SS G_CDS: 2.03 Total: 47.55 kcal Total: -71.04 4.70 -66.34 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970434812.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.476 kcal (2) G-P(sol) polarization free energy of solvation -71.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds