Wall clock time and date at job start Tue Mar 31 2020 16:23:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50700 * 109.46941 * 2 1 4 4 C 1.38379 * 119.85811 * 265.02345 * 3 2 1 5 5 C 1.37932 * 120.14974 * 179.72509 * 4 3 2 6 6 C 1.39600 * 119.84912 * 0.48634 * 5 4 3 7 7 C 1.47846 * 120.14077 * 179.78921 * 6 5 4 8 8 O 1.21553 * 119.99575 * 179.72458 * 7 6 5 9 9 N 1.34774 * 120.00306 * 359.72953 * 7 6 5 10 10 C 1.46501 * 120.00022 * 179.97438 * 9 7 6 11 11 H 1.09002 * 109.47045 * 34.99609 * 10 9 7 12 12 C 1.53000 * 109.47136 * 274.99616 * 10 9 7 13 13 C 1.53004 * 109.47141 * 154.99914 * 10 9 7 14 14 C 1.53499 * 114.20194 * 295.68016 * 13 10 9 15 15 N 1.47073 * 87.98271 * 220.34656 * 14 13 10 16 16 C 1.36933 * 136.05439 * 207.08381 * 15 14 13 17 17 H 1.07997 * 120.00623 * 7.51587 * 16 15 14 18 18 C 1.38811 * 119.99801 * 187.50516 * 16 15 14 19 19 N 1.31620 * 120.00313 * 174.40470 * 18 16 15 20 20 Si 1.86807 * 120.00107 * 354.40682 * 18 16 15 21 21 H 1.48500 * 109.46966 * 174.95313 * 20 18 16 22 22 H 1.48493 * 109.47091 * 294.95489 * 20 18 16 23 23 H 1.48504 * 109.46855 * 54.95521 * 20 18 16 24 24 C 1.47068 * 87.88530 * 27.34485 * 15 14 13 25 25 C 1.39556 * 119.71238 * 359.52050 * 6 5 4 26 26 C 1.37983 * 119.84988 * 0.24633 * 25 6 5 27 27 C 1.50696 * 119.92260 * 180.02562 * 26 25 6 28 28 C 1.52997 * 109.47365 * 264.99845 * 27 26 25 29 29 H 1.08992 * 109.47632 * 59.99511 * 1 2 3 30 30 H 1.08999 * 109.47194 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.46896 * 299.99312 * 1 2 3 32 32 H 1.09005 * 109.46896 * 240.00688 * 2 1 3 33 33 H 1.08992 * 109.47632 * 120.00489 * 2 1 3 34 34 H 1.08005 * 119.92439 * 359.97438 * 4 3 2 35 35 H 1.07996 * 120.07872 * 180.27821 * 5 4 3 36 36 H 0.97002 * 120.00125 * 359.97438 * 9 7 6 37 37 H 1.08998 * 109.47162 * 304.63827 * 12 10 9 38 38 H 1.09006 * 109.46666 * 64.63553 * 12 10 9 39 39 H 1.08999 * 109.46923 * 184.63216 * 12 10 9 40 40 H 1.08999 * 113.41397 * 68.87868 * 13 10 9 41 41 H 1.08997 * 113.46896 * 105.57052 * 14 13 10 42 42 H 1.09003 * 113.52350 * 335.12944 * 14 13 10 43 43 H 0.97005 * 119.99470 * 355.01014 * 19 18 16 44 44 H 1.08994 * 113.47031 * 87.43931 * 24 15 14 45 45 H 1.09002 * 113.46631 * 217.88470 * 24 15 14 46 46 H 1.08000 * 120.07156 * 180.23081 * 25 6 5 47 47 H 1.09006 * 109.47435 * 25.00514 * 27 26 25 48 48 H 1.09012 * 109.46998 * 145.00329 * 27 26 25 49 49 H 1.09007 * 109.46784 * 60.00744 * 28 27 26 50 50 H 1.09002 * 109.47467 * 179.97438 * 28 27 26 51 51 H 1.08989 * 109.47577 * 300.00533 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3601 2.0357 -1.1956 5 6 2.8150 3.3378 -1.2031 6 6 2.9541 4.0321 0.0000 7 6 3.4456 5.4265 -0.0002 8 8 3.5609 6.0303 1.0485 9 7 3.7656 6.0281 -1.1629 10 6 4.2520 7.4100 -1.1631 11 1 4.8571 7.5823 -0.2729 12 6 3.0607 8.3701 -1.1636 13 6 5.1020 7.6514 -2.4122 14 6 6.3877 6.8147 -2.4697 15 7 7.0753 8.0027 -2.9978 16 6 8.1615 8.2391 -3.7975 17 1 8.6560 7.4172 -4.2937 18 6 8.6268 9.5354 -3.9706 19 7 9.7341 9.7522 -4.6484 20 14 7.6816 10.9723 -3.2416 21 1 8.4439 12.2279 -3.4597 22 1 6.3552 11.0777 -3.9009 23 1 7.4943 10.7536 -1.7848 24 6 6.0870 8.8250 -2.2837 25 6 2.6219 3.4062 1.2023 26 6 2.1634 2.1048 1.1953 27 6 1.8036 1.4276 2.4925 28 6 3.0008 0.6177 2.9942 29 1 -0.3634 0.5139 -0.8898 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8901 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5139 0.8898 34 1 2.2556 1.4960 -2.1253 35 1 3.0662 3.8180 -2.1372 36 1 3.6738 5.5462 -1.9997 37 1 2.4116 8.1431 -2.0092 38 1 2.5013 8.2554 -0.2351 39 1 3.4206 9.3956 -1.2467 40 1 4.5245 7.6474 -3.3365 41 1 6.3376 5.9903 -3.1809 42 1 6.7489 6.5042 -1.4893 43 1 10.2635 9.0034 -4.9647 44 1 6.3682 9.0450 -1.2538 45 1 5.7807 9.7131 -2.8364 46 1 2.7237 3.9392 2.1361 47 1 1.5379 2.1808 3.2343 48 1 0.9560 0.7612 2.3317 49 1 3.8484 1.2840 3.1551 50 1 2.7408 0.1282 3.9328 51 1 3.2665 -0.1355 2.2526 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970993869.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:23:15 Heat of formation + Delta-G solvation = 27.152067 kcal Electronic energy + Delta-G solvation = -28012.829148 eV Core-core repulsion = 24299.267873 eV Total energy + Delta-G solvation = -3713.561275 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.61190 -39.48905 -38.39142 -35.08876 -34.98880 -33.77733 -32.40988 -31.04793 -30.18173 -29.14849 -27.81109 -25.44605 -25.09200 -24.31220 -23.54489 -22.06074 -21.85855 -20.87633 -20.01877 -19.39903 -17.67617 -17.47058 -16.73006 -15.94346 -15.88230 -15.25018 -15.16711 -14.95245 -14.26715 -14.13822 -14.07550 -13.97950 -13.82157 -13.62016 -13.55837 -13.30105 -13.06205 -12.81193 -12.73217 -12.33577 -12.20549 -11.97996 -11.85678 -11.76766 -11.66909 -11.49248 -11.25772 -11.12708 -11.05843 -10.94293 -10.71447 -10.34552 -10.16471 -9.92012 -9.21574 -9.15317 -9.11785 -9.01860 -8.90123 -8.82003 -7.16295 -6.29327 -3.23246 0.63142 1.09340 2.74925 3.12777 3.41005 3.45623 3.65054 3.65852 4.30195 4.36023 4.50839 4.59492 4.60389 4.65566 4.71764 4.85321 4.92336 4.93224 4.99181 5.03900 5.08526 5.10763 5.21533 5.26720 5.40533 5.41283 5.47426 5.48701 5.54956 5.55897 5.61249 5.67035 5.75505 5.77492 5.80435 5.88285 5.94712 6.04742 6.06022 6.12668 6.19873 6.23531 6.25956 6.31335 6.32451 6.39454 6.56685 6.64923 6.91122 7.11697 7.53272 8.22232 8.23719 8.97632 9.50143 10.36825 11.20569 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.022063 B = 0.002308 C = 0.002248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1268.767135 B =12129.668045 C =12451.957487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.092 4.092 3 C -0.058 4.058 4 C -0.123 4.123 5 C -0.087 4.087 6 C -0.132 4.132 7 C 0.557 3.443 8 O -0.540 6.540 9 N -0.714 5.714 10 C 0.152 3.848 11 H 0.091 0.909 12 C -0.160 4.160 13 C -0.142 4.142 14 C 0.130 3.870 15 N -0.629 5.629 16 C -0.304 4.304 17 H 0.082 0.918 18 C -0.026 4.026 19 N -0.934 5.934 20 Si 1.070 2.930 21 H -0.295 1.295 22 H -0.292 1.292 23 H -0.286 1.286 24 C 0.109 3.891 25 C -0.056 4.056 26 C -0.090 4.090 27 C -0.088 4.088 28 C -0.149 4.149 29 H 0.057 0.943 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.073 0.927 33 H 0.078 0.922 34 H 0.127 0.873 35 H 0.127 0.873 36 H 0.399 0.601 37 H 0.056 0.944 38 H 0.057 0.943 39 H 0.069 0.931 40 H 0.099 0.901 41 H 0.042 0.958 42 H 0.037 0.963 43 H 0.260 0.740 44 H 0.047 0.953 45 H 0.055 0.945 46 H 0.135 0.865 47 H 0.073 0.927 48 H 0.076 0.924 49 H 0.058 0.942 50 H 0.058 0.942 51 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.943 -20.053 11.221 31.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.129 4.129 3 C -0.058 4.058 4 C -0.141 4.141 5 C -0.105 4.105 6 C -0.135 4.135 7 C 0.345 3.655 8 O -0.419 6.419 9 N -0.365 5.365 10 C 0.047 3.953 11 H 0.109 0.891 12 C -0.218 4.218 13 C -0.162 4.162 14 C 0.003 3.997 15 N -0.357 5.357 16 C -0.430 4.430 17 H 0.100 0.900 18 C -0.225 4.225 19 N -0.576 5.576 20 Si 0.902 3.098 21 H -0.222 1.222 22 H -0.220 1.220 23 H -0.213 1.213 24 C -0.017 4.017 25 C -0.075 4.075 26 C -0.090 4.090 27 C -0.125 4.125 28 C -0.206 4.206 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.091 0.909 33 H 0.096 0.904 34 H 0.145 0.855 35 H 0.145 0.855 36 H 0.234 0.766 37 H 0.075 0.925 38 H 0.076 0.924 39 H 0.088 0.912 40 H 0.117 0.883 41 H 0.061 0.939 42 H 0.055 0.945 43 H 0.070 0.930 44 H 0.064 0.936 45 H 0.073 0.927 46 H 0.152 0.848 47 H 0.091 0.909 48 H 0.094 0.906 49 H 0.077 0.923 50 H 0.077 0.923 51 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -21.635 -17.894 11.883 30.488 hybrid contribution 0.167 -1.894 -0.621 2.000 sum -21.468 -19.788 11.262 31.294 Atomic orbital electron populations 1.21763 0.94505 1.01847 1.02405 1.20664 0.96371 0.92590 1.03275 1.19935 0.97186 0.96084 0.92594 1.20959 1.00546 0.94879 0.97731 1.21305 0.97484 0.94637 0.97114 1.19971 1.04618 0.94480 0.94434 1.18265 0.77435 0.85891 0.83948 1.90761 1.53727 1.66029 1.31337 1.46001 1.66580 1.15159 1.08729 1.21032 0.94903 0.79811 0.99527 0.89136 1.22137 0.98098 0.99727 1.01861 1.23594 0.95002 1.00733 0.96861 1.22300 0.88904 0.91800 0.96689 1.45972 1.33227 1.01830 1.54633 1.20150 1.04631 0.95802 1.22410 0.90002 1.25746 0.98224 0.98485 1.00012 1.70921 1.13701 1.33622 1.39367 0.83727 0.74198 0.75982 0.75898 1.22190 1.22034 1.21287 1.22734 0.87925 0.94537 0.96507 1.21142 0.94939 0.93605 0.97797 1.19695 1.00455 0.93914 0.94926 1.20605 0.98806 0.99389 0.93679 1.21778 0.97988 1.00048 1.00821 0.92422 0.92256 0.92343 0.90863 0.90389 0.85489 0.85524 0.76633 0.92532 0.92399 0.91215 0.88297 0.93928 0.94546 0.92974 0.93556 0.92730 0.84764 0.90855 0.90551 0.92303 0.92284 0.92451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.77 9.72 37.16 0.36 -0.40 16 2 C -0.09 -0.54 5.37 -27.88 -0.15 -0.69 16 3 C -0.06 -0.47 5.14 -104.53 -0.54 -1.00 16 4 C -0.12 -1.02 9.66 -39.64 -0.38 -1.40 16 5 C -0.09 -0.81 9.54 -39.19 -0.37 -1.19 16 6 C -0.13 -1.54 5.87 -104.97 -0.62 -2.15 16 7 C 0.56 7.80 7.74 -12.33 -0.10 7.71 16 8 O -0.54 -9.39 16.01 5.32 0.09 -9.30 16 9 N -0.71 -9.01 4.89 -54.75 -0.27 -9.27 16 10 C 0.15 2.19 2.35 -67.93 -0.16 2.03 16 11 H 0.09 1.50 7.41 -51.93 -0.38 1.11 16 12 C -0.16 -2.05 9.48 37.16 0.35 -1.70 16 13 C -0.14 -2.35 3.52 -89.96 -0.32 -2.67 16 14 C 0.13 2.54 8.12 -8.49 -0.07 2.47 16 15 N -0.63 -15.63 3.69 -184.56 -0.68 -16.31 16 16 C -0.30 -8.88 11.08 -15.06 -0.17 -9.05 16 17 H 0.08 2.52 8.06 -52.49 -0.42 2.09 16 18 C -0.03 -0.79 5.50 -17.43 -0.10 -0.88 16 19 N -0.93 -29.84 13.70 55.49 0.76 -29.08 16 20 Si 1.07 27.07 25.16 -169.99 -4.28 22.79 16 21 H -0.29 -7.57 7.11 56.52 0.40 -7.17 16 22 H -0.29 -6.92 6.51 56.52 0.37 -6.55 16 23 H -0.29 -6.78 6.21 56.52 0.35 -6.43 16 24 C 0.11 2.29 5.27 -8.36 -0.04 2.25 16 25 C -0.06 -0.62 9.22 -39.18 -0.36 -0.98 16 26 C -0.09 -0.80 5.13 -104.68 -0.54 -1.34 16 27 C -0.09 -0.60 5.38 -27.89 -0.15 -0.75 16 28 C -0.15 -0.95 9.72 37.16 0.36 -0.59 16 29 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 30 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.06 0.31 6.79 -51.93 -0.35 -0.04 16 32 H 0.07 0.38 8.05 -51.93 -0.42 -0.04 16 33 H 0.08 0.42 5.60 -51.93 -0.29 0.12 16 34 H 0.13 0.79 8.06 -52.48 -0.42 0.37 16 35 H 0.13 0.95 6.41 -52.49 -0.34 0.62 16 36 H 0.40 4.08 6.64 -40.82 -0.27 3.81 16 37 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 38 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 39 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.10 1.54 8.14 -51.93 -0.42 1.12 16 41 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.04 0.73 8.11 -51.93 -0.42 0.31 16 43 H 0.26 8.21 8.73 -40.82 -0.36 7.85 16 44 H 0.05 0.98 7.50 -51.93 -0.39 0.59 16 45 H 0.05 1.18 4.72 -51.93 -0.25 0.93 16 46 H 0.13 1.53 7.65 -52.49 -0.40 1.13 16 47 H 0.07 0.49 8.05 -51.93 -0.42 0.07 16 48 H 0.08 0.43 5.59 -51.92 -0.29 0.14 16 49 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 50 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 51 H 0.06 0.35 6.79 -51.94 -0.35 0.00 16 LS Contribution 398.52 15.07 6.01 6.01 Total: -1.00 -34.66 398.52 -9.82 -44.47 By element: Atomic # 1 Polarization: 9.48 SS G_CDS: -8.46 Total: 1.02 kcal Atomic # 6 Polarization: -7.34 SS G_CDS: -2.98 Total: -10.33 kcal Atomic # 7 Polarization: -54.48 SS G_CDS: -0.19 Total: -54.66 kcal Atomic # 8 Polarization: -9.39 SS G_CDS: 0.09 Total: -9.30 kcal Atomic # 14 Polarization: 27.07 SS G_CDS: -4.28 Total: 22.79 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -34.66 -9.82 -44.47 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970993869.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.624 kcal (2) G-P(sol) polarization free energy of solvation -34.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.472 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds