Wall clock time and date at job start Tue Mar 31 2020 16:23:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50700 * 109.46941 * 2 1 4 4 C 1.38379 * 119.85811 * 265.02345 * 3 2 1 5 5 C 1.37932 * 120.14974 * 179.72509 * 4 3 2 6 6 C 1.39600 * 119.84912 * 0.48634 * 5 4 3 7 7 C 1.47846 * 120.14077 * 179.78921 * 6 5 4 8 8 O 1.21553 * 119.99575 * 179.72458 * 7 6 5 9 9 N 1.34774 * 120.00306 * 359.72953 * 7 6 5 10 10 C 1.46501 * 120.00022 * 179.97438 * 9 7 6 11 11 H 1.09002 * 109.47045 * 34.99609 * 10 9 7 12 12 C 1.53000 * 109.47136 * 274.99616 * 10 9 7 13 13 C 1.53004 * 109.47141 * 154.99914 * 10 9 7 14 14 C 1.53499 * 114.20194 * 295.68016 * 13 10 9 15 15 N 1.47073 * 87.98271 * 220.34656 * 14 13 10 16 16 C 1.36933 * 136.05439 * 207.08381 * 15 14 13 17 17 H 1.07997 * 120.00623 * 7.51587 * 16 15 14 18 18 C 1.38811 * 119.99801 * 187.50516 * 16 15 14 19 19 N 1.31620 * 120.00313 * 174.40470 * 18 16 15 20 20 Si 1.86807 * 120.00107 * 354.40682 * 18 16 15 21 21 H 1.48500 * 109.46966 * 174.95313 * 20 18 16 22 22 H 1.48493 * 109.47091 * 294.95489 * 20 18 16 23 23 H 1.48504 * 109.46855 * 54.95521 * 20 18 16 24 24 C 1.47068 * 87.88530 * 27.34485 * 15 14 13 25 25 C 1.39556 * 119.71238 * 359.52050 * 6 5 4 26 26 C 1.37983 * 119.84988 * 0.24633 * 25 6 5 27 27 C 1.50696 * 119.92260 * 180.02562 * 26 25 6 28 28 C 1.52997 * 109.47365 * 264.99845 * 27 26 25 29 29 H 1.08992 * 109.47632 * 59.99511 * 1 2 3 30 30 H 1.08999 * 109.47194 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.46896 * 299.99312 * 1 2 3 32 32 H 1.09005 * 109.46896 * 240.00688 * 2 1 3 33 33 H 1.08992 * 109.47632 * 120.00489 * 2 1 3 34 34 H 1.08005 * 119.92439 * 359.97438 * 4 3 2 35 35 H 1.07996 * 120.07872 * 180.27821 * 5 4 3 36 36 H 0.97002 * 120.00125 * 359.97438 * 9 7 6 37 37 H 1.08998 * 109.47162 * 304.63827 * 12 10 9 38 38 H 1.09006 * 109.46666 * 64.63553 * 12 10 9 39 39 H 1.08999 * 109.46923 * 184.63216 * 12 10 9 40 40 H 1.08999 * 113.41397 * 68.87868 * 13 10 9 41 41 H 1.08997 * 113.46896 * 105.57052 * 14 13 10 42 42 H 1.09003 * 113.52350 * 335.12944 * 14 13 10 43 43 H 0.97005 * 119.99470 * 355.01014 * 19 18 16 44 44 H 1.08994 * 113.47031 * 87.43931 * 24 15 14 45 45 H 1.09002 * 113.46631 * 217.88470 * 24 15 14 46 46 H 1.08000 * 120.07156 * 180.23081 * 25 6 5 47 47 H 1.09006 * 109.47435 * 25.00514 * 27 26 25 48 48 H 1.09012 * 109.46998 * 145.00329 * 27 26 25 49 49 H 1.09007 * 109.46784 * 60.00744 * 28 27 26 50 50 H 1.09002 * 109.47467 * 179.97438 * 28 27 26 51 51 H 1.08989 * 109.47577 * 300.00533 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3601 2.0357 -1.1956 5 6 2.8150 3.3378 -1.2031 6 6 2.9541 4.0321 0.0000 7 6 3.4456 5.4265 -0.0002 8 8 3.5609 6.0303 1.0485 9 7 3.7656 6.0281 -1.1629 10 6 4.2520 7.4100 -1.1631 11 1 4.8571 7.5823 -0.2729 12 6 3.0607 8.3701 -1.1636 13 6 5.1020 7.6514 -2.4122 14 6 6.3877 6.8147 -2.4697 15 7 7.0753 8.0027 -2.9978 16 6 8.1615 8.2391 -3.7975 17 1 8.6560 7.4172 -4.2937 18 6 8.6268 9.5354 -3.9706 19 7 9.7341 9.7522 -4.6484 20 14 7.6816 10.9723 -3.2416 21 1 8.4439 12.2279 -3.4597 22 1 6.3552 11.0777 -3.9009 23 1 7.4943 10.7536 -1.7848 24 6 6.0870 8.8250 -2.2837 25 6 2.6219 3.4062 1.2023 26 6 2.1634 2.1048 1.1953 27 6 1.8036 1.4276 2.4925 28 6 3.0008 0.6177 2.9942 29 1 -0.3634 0.5139 -0.8898 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8901 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5139 0.8898 34 1 2.2556 1.4960 -2.1253 35 1 3.0662 3.8180 -2.1372 36 1 3.6738 5.5462 -1.9997 37 1 2.4116 8.1431 -2.0092 38 1 2.5013 8.2554 -0.2351 39 1 3.4206 9.3956 -1.2467 40 1 4.5245 7.6474 -3.3365 41 1 6.3376 5.9903 -3.1809 42 1 6.7489 6.5042 -1.4893 43 1 10.2635 9.0034 -4.9647 44 1 6.3682 9.0450 -1.2538 45 1 5.7807 9.7131 -2.8364 46 1 2.7237 3.9392 2.1361 47 1 1.5379 2.1808 3.2343 48 1 0.9560 0.7612 2.3317 49 1 3.8484 1.2840 3.1551 50 1 2.7408 0.1282 3.9328 51 1 3.2665 -0.1355 2.2526 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000970993869.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:23:14 Heat of formation + Delta-G solvation = 5.863652 kcal Electronic energy + Delta-G solvation = -28013.752283 eV Core-core repulsion = 24299.267873 eV Total energy + Delta-G solvation = -3714.484410 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.55896 -40.63290 -39.68079 -36.36759 -35.68964 -34.52203 -34.32729 -32.21833 -30.83936 -29.96716 -29.51465 -26.99519 -25.97748 -25.37861 -24.58907 -23.00983 -22.49760 -22.19470 -21.31222 -20.64030 -19.57160 -18.61208 -17.73730 -17.18430 -16.66286 -16.54666 -16.14634 -16.05169 -15.79607 -15.32283 -15.15491 -14.84835 -14.72439 -14.61102 -14.49109 -14.42407 -14.14292 -13.70542 -13.50295 -13.35996 -13.23304 -13.14482 -13.08020 -12.78466 -12.62060 -12.49374 -12.36777 -12.12991 -12.04608 -12.03725 -11.72274 -11.68246 -11.46304 -11.32085 -11.14071 -11.02388 -10.79297 -10.18133 -9.81812 -9.56435 -9.25662 -8.63921 -5.50419 -0.15020 0.39245 1.37742 1.48486 1.66849 1.82937 2.07424 2.53276 2.84039 2.94832 3.16748 3.44728 3.68728 3.72393 3.82929 3.86807 3.96551 4.12911 4.17068 4.21498 4.26827 4.40281 4.46389 4.47109 4.53806 4.54179 4.55258 4.60181 4.62656 4.71713 4.75247 4.77625 4.83965 4.86389 5.01308 5.01991 5.05935 5.09393 5.11454 5.16248 5.22932 5.27140 5.32838 5.34079 5.41150 5.45850 5.49598 5.50486 5.67107 5.92518 5.96186 6.53024 6.67240 7.18981 7.29819 8.24695 8.87528 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.022063 B = 0.002308 C = 0.002248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1268.767135 B =12129.668045 C =12451.957487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.091 4.091 3 C -0.055 4.055 4 C -0.125 4.125 5 C -0.086 4.086 6 C -0.154 4.154 7 C 0.556 3.444 8 O -0.583 6.583 9 N -0.704 5.704 10 C 0.160 3.840 11 H 0.068 0.932 12 C -0.155 4.155 13 C -0.104 4.104 14 C 0.127 3.873 15 N -0.661 5.661 16 C -0.292 4.292 17 H 0.050 0.950 18 C -0.087 4.087 19 N -0.970 5.970 20 Si 1.107 2.893 21 H -0.305 1.305 22 H -0.263 1.263 23 H -0.264 1.264 24 C 0.098 3.902 25 C -0.074 4.074 26 C -0.093 4.093 27 C -0.087 4.087 28 C -0.147 4.147 29 H 0.054 0.946 30 H 0.072 0.928 31 H 0.054 0.946 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.153 0.847 35 H 0.146 0.854 36 H 0.412 0.588 37 H 0.076 0.924 38 H 0.050 0.950 39 H 0.074 0.926 40 H 0.121 0.879 41 H 0.054 0.946 42 H 0.035 0.965 43 H 0.246 0.754 44 H 0.049 0.951 45 H 0.057 0.943 46 H 0.118 0.882 47 H 0.070 0.930 48 H 0.092 0.908 49 H 0.042 0.958 50 H 0.072 0.928 51 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.109 -21.749 11.265 35.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.128 4.128 3 C -0.055 4.055 4 C -0.143 4.143 5 C -0.105 4.105 6 C -0.157 4.157 7 C 0.346 3.654 8 O -0.464 6.464 9 N -0.355 5.355 10 C 0.055 3.945 11 H 0.086 0.914 12 C -0.213 4.213 13 C -0.123 4.123 14 C 0.001 3.999 15 N -0.390 5.390 16 C -0.420 4.420 17 H 0.068 0.932 18 C -0.279 4.279 19 N -0.615 5.615 20 Si 0.932 3.068 21 H -0.233 1.233 22 H -0.189 1.189 23 H -0.190 1.190 24 C -0.027 4.027 25 C -0.093 4.093 26 C -0.093 4.093 27 C -0.124 4.124 28 C -0.204 4.204 29 H 0.073 0.927 30 H 0.091 0.909 31 H 0.073 0.927 32 H 0.103 0.897 33 H 0.103 0.897 34 H 0.171 0.829 35 H 0.163 0.837 36 H 0.250 0.750 37 H 0.095 0.905 38 H 0.070 0.930 39 H 0.093 0.907 40 H 0.139 0.861 41 H 0.073 0.927 42 H 0.053 0.947 43 H 0.055 0.945 44 H 0.066 0.934 45 H 0.075 0.925 46 H 0.136 0.864 47 H 0.089 0.911 48 H 0.111 0.889 49 H 0.061 0.939 50 H 0.091 0.909 51 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -24.851 -19.651 11.924 33.851 hybrid contribution 1.146 -1.566 -0.609 2.034 sum -23.706 -21.217 11.315 33.766 Atomic orbital electron populations 1.21756 0.93850 1.02675 1.02102 1.20735 0.96799 0.91007 1.04260 1.20293 0.95857 0.97161 0.92173 1.21309 0.99583 0.94513 0.98872 1.21516 0.96978 0.95116 0.96844 1.19865 1.06630 0.93487 0.95677 1.18648 0.76684 0.86676 0.83440 1.90734 1.55686 1.67180 1.32802 1.45833 1.65969 1.14534 1.09186 1.20798 0.95191 0.81308 0.97247 0.91400 1.22091 0.97373 0.99381 1.02445 1.23284 0.93690 0.96681 0.98682 1.22482 0.89689 0.91272 0.96426 1.46114 1.32777 1.05249 1.54841 1.20027 1.05178 0.94826 1.21930 0.93176 1.27120 0.98603 1.01603 1.00532 1.71025 1.15382 1.33077 1.42008 0.83310 0.74238 0.72498 0.76752 1.23268 1.18866 1.18984 1.22945 0.88004 0.95834 0.95918 1.21168 0.96196 0.94701 0.97213 1.19907 0.99925 0.93174 0.96340 1.20651 0.99496 0.99533 0.92703 1.21766 0.97193 0.99778 1.01706 0.92710 0.90890 0.92701 0.89653 0.89707 0.82941 0.83673 0.74992 0.90496 0.93045 0.90727 0.86096 0.92717 0.94703 0.94526 0.93364 0.92501 0.86368 0.91134 0.88918 0.93909 0.90864 0.91962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 9.72 71.98 0.70 -0.38 16 2 C -0.09 -0.78 5.37 29.85 0.16 -0.62 16 3 C -0.05 -0.75 5.14 -19.81 -0.10 -0.86 16 4 C -0.13 -1.71 9.66 22.23 0.21 -1.49 16 5 C -0.09 -1.42 9.54 22.53 0.21 -1.21 16 6 C -0.15 -3.47 5.87 -20.09 -0.12 -3.59 16 7 C 0.56 15.31 7.74 86.79 0.67 15.98 16 8 O -0.58 -20.62 16.01 -3.88 -0.06 -20.69 16 9 N -0.70 -16.42 4.89 -445.40 -2.18 -18.60 16 10 C 0.16 4.28 2.35 44.99 0.11 4.38 16 11 H 0.07 2.18 7.41 -2.39 -0.02 2.16 16 12 C -0.15 -3.55 9.48 71.98 0.68 -2.86 16 13 C -0.10 -3.15 3.52 -10.37 -0.04 -3.18 16 14 C 0.13 4.76 8.12 83.18 0.68 5.44 16 15 N -0.66 -32.28 3.69 -737.83 -2.72 -35.00 16 16 C -0.29 -17.33 11.08 84.03 0.93 -16.40 16 17 H 0.05 3.20 8.06 -2.91 -0.02 3.18 16 18 C -0.09 -5.31 5.50 84.86 0.47 -4.84 16 19 N -0.97 -63.80 13.70 21.65 0.30 -63.51 16 20 Si 1.11 54.04 25.16 68.60 1.73 55.76 16 21 H -0.30 -15.27 7.11 99.48 0.71 -14.57 16 22 H -0.26 -11.46 6.51 99.48 0.65 -10.81 16 23 H -0.26 -11.83 6.21 99.48 0.62 -11.21 16 24 C 0.10 3.90 5.27 83.27 0.44 4.34 16 25 C -0.07 -1.63 9.22 22.53 0.21 -1.42 16 26 C -0.09 -1.56 5.13 -19.90 -0.10 -1.66 16 27 C -0.09 -1.07 5.38 29.85 0.16 -0.91 16 28 C -0.15 -1.69 9.72 71.98 0.70 -0.99 16 29 H 0.05 0.45 8.14 -2.39 -0.02 0.43 16 30 H 0.07 0.36 8.14 -2.39 -0.02 0.34 16 31 H 0.05 0.45 6.79 -2.38 -0.02 0.43 16 32 H 0.08 0.56 8.05 -2.38 -0.02 0.54 16 33 H 0.08 0.64 5.60 -2.39 -0.01 0.62 16 34 H 0.15 1.29 8.06 -2.91 -0.02 1.26 16 35 H 0.15 1.74 6.41 -2.91 -0.02 1.72 16 36 H 0.41 7.25 6.64 -92.71 -0.62 6.63 16 37 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 38 H 0.05 1.27 8.14 -2.38 -0.02 1.25 16 39 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 40 H 0.12 3.24 8.14 -2.39 -0.02 3.22 16 41 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 42 H 0.04 1.35 8.11 -2.39 -0.02 1.33 16 43 H 0.25 16.23 8.73 -92.70 -0.81 15.42 16 44 H 0.05 1.93 7.50 -2.39 -0.02 1.91 16 45 H 0.06 2.26 4.72 -2.39 -0.01 2.25 16 46 H 0.12 2.89 7.65 -2.91 -0.02 2.87 16 47 H 0.07 0.90 8.05 -2.38 -0.02 0.88 16 48 H 0.09 0.84 5.59 -2.38 -0.01 0.82 16 49 H 0.04 0.62 8.14 -2.38 -0.02 0.60 16 50 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 51 H 0.06 0.65 6.79 -2.39 -0.02 0.63 16 Total: -1.00 -77.93 398.52 3.15 -74.79 By element: Atomic # 1 Polarization: 17.39 SS G_CDS: 0.12 Total: 17.51 kcal Atomic # 6 Polarization: -16.24 SS G_CDS: 5.97 Total: -10.27 kcal Atomic # 7 Polarization: -112.50 SS G_CDS: -4.61 Total: -117.11 kcal Atomic # 8 Polarization: -20.62 SS G_CDS: -0.06 Total: -20.69 kcal Atomic # 14 Polarization: 54.04 SS G_CDS: 1.73 Total: 55.76 kcal Total: -77.93 3.15 -74.79 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970993869.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.649 kcal (2) G-P(sol) polarization free energy of solvation -77.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.785 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds