Wall clock time and date at job start Tue Mar 31 2020 16:23:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50698 * 109.46974 * 2 1 4 4 C 1.38387 * 119.85712 * 265.30024 * 3 2 1 5 5 C 1.37932 * 120.14770 * 180.25901 * 4 3 2 6 6 C 1.39601 * 119.85115 * 359.44275 * 5 4 3 7 7 C 1.47844 * 120.14047 * 180.30248 * 6 5 4 8 8 O 1.21551 * 119.99751 * 179.97438 * 7 6 5 9 9 N 1.34778 * 120.00368 * 359.97438 * 7 6 5 10 10 C 1.46503 * 119.99775 * 180.02562 * 9 7 6 11 11 H 1.08994 * 109.47300 * 324.99602 * 10 9 7 12 12 C 1.52998 * 109.47122 * 84.99986 * 10 9 7 13 13 C 1.53005 * 109.46455 * 204.99638 * 10 9 7 14 14 C 1.53953 * 113.73792 * 161.82103 * 13 10 9 15 15 N 1.47813 * 86.03398 * 222.08687 * 14 13 10 16 16 C 1.36939 * 134.44995 * 204.64427 * 15 14 13 17 17 H 1.08005 * 119.99333 * 179.86765 * 16 15 14 18 18 C 1.38810 * 120.00231 * 359.86620 * 16 15 14 19 19 N 1.31614 * 120.00211 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 119.99870 * 179.97438 * 18 16 15 21 21 H 1.48508 * 109.47109 * 60.00244 * 20 18 16 22 22 H 1.48500 * 109.47310 * 179.97438 * 20 18 16 23 23 H 1.48495 * 109.47580 * 300.00392 * 20 18 16 24 24 C 1.47574 * 91.05200 * 24.55045 * 15 14 13 25 25 C 1.39550 * 119.71001 * 0.27964 * 6 5 4 26 26 C 1.37975 * 119.85539 * 359.97438 * 25 6 5 27 27 C 1.50708 * 119.92858 * 180.02562 * 26 25 6 28 28 C 1.53005 * 109.46560 * 265.00005 * 27 26 25 29 29 H 1.08998 * 109.47224 * 299.99380 * 1 2 3 30 30 H 1.08994 * 109.47449 * 60.00245 * 1 2 3 31 31 H 1.09006 * 109.46755 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.47624 * 240.00361 * 2 1 3 33 33 H 1.09000 * 109.47824 * 119.99970 * 2 1 3 34 34 H 1.08004 * 119.92560 * 359.97438 * 4 3 2 35 35 H 1.08002 * 120.07538 * 179.72033 * 5 4 3 36 36 H 0.96999 * 119.99897 * 359.97438 * 9 7 6 37 37 H 1.09006 * 109.46904 * 180.02562 * 12 10 9 38 38 H 1.09001 * 109.47078 * 300.06913 * 12 10 9 39 39 H 1.08994 * 109.47351 * 60.06999 * 12 10 9 40 40 H 1.08989 * 112.94638 * 293.41185 * 13 10 9 41 41 H 1.09001 * 113.76749 * 336.35191 * 14 13 10 42 42 H 1.08995 * 113.76722 * 107.74522 * 14 13 10 43 43 H 0.96998 * 120.00028 * 180.02562 * 19 18 16 44 44 H 1.09005 * 113.76916 * 221.15200 * 24 15 14 45 45 H 1.09005 * 113.87176 * 89.76938 * 24 15 14 46 46 H 1.08006 * 120.07429 * 179.97438 * 25 6 5 47 47 H 1.08998 * 109.47044 * 24.99684 * 27 26 25 48 48 H 1.08997 * 109.46986 * 145.00186 * 27 26 25 49 49 H 1.08998 * 109.47180 * 299.99595 * 28 27 26 50 50 H 1.08997 * 109.47324 * 60.00387 * 28 27 26 51 51 H 1.09002 * 109.46593 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 6 2.3546 2.0376 -1.1962 5 6 2.8199 3.3360 -1.2027 6 6 2.9544 4.0320 0.0000 7 6 3.4462 5.4263 -0.0002 8 8 3.5619 6.0300 1.0484 9 7 3.7663 6.0279 -1.1630 10 6 4.2542 7.4093 -1.1630 11 1 3.7525 7.9718 -0.3757 12 6 5.7636 7.4171 -0.9128 13 6 3.9586 8.0544 -2.5185 14 6 4.0137 9.5928 -2.4979 15 7 2.7999 9.5453 -3.3401 16 6 2.2261 10.3986 -4.2445 17 1 1.3095 10.1201 -4.7432 18 6 2.8226 11.6213 -4.5201 19 7 3.9398 11.9604 -3.9126 20 14 2.0403 12.7850 -5.7543 21 1 0.6747 13.1470 -5.2965 22 1 2.8657 14.0141 -5.8679 23 1 1.9579 12.1192 -7.0791 24 6 2.4563 8.2088 -2.8170 25 6 2.6221 3.4061 1.2022 26 6 2.1628 2.1051 1.1952 27 6 1.8029 1.4278 2.4925 28 6 2.9999 0.6171 2.9936 29 1 -0.3633 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 2.2459 1.4995 -2.1263 35 1 3.0754 3.8147 -2.1365 36 1 3.6744 5.5460 -1.9998 37 1 6.1265 8.4449 -0.9123 38 1 5.9743 6.9562 0.0523 39 1 6.2654 6.8556 -1.7007 40 1 4.5245 7.6060 -3.3349 41 1 3.8471 10.0252 -1.5112 42 1 4.8851 10.0080 -3.0040 43 1 4.3564 12.8150 -4.1050 44 1 2.0866 7.5210 -3.5776 45 1 1.8310 8.2318 -1.9244 46 1 2.7243 3.9390 2.1361 47 1 1.5380 2.1811 3.2344 48 1 0.9549 0.7621 2.3317 49 1 3.2647 -0.1362 2.2517 50 1 3.8479 1.2828 3.1543 51 1 2.7397 0.1276 3.9321 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970993870.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:23:18 Heat of formation + Delta-G solvation = 18.988140 kcal Electronic energy + Delta-G solvation = -27896.785658 eV Core-core repulsion = 24182.870368 eV Total energy + Delta-G solvation = -3713.915289 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.51134 -39.26412 -37.93173 -34.98058 -34.78622 -33.72674 -32.16238 -30.81441 -30.11519 -29.05144 -27.45673 -25.25615 -24.72483 -24.21111 -23.65197 -22.11156 -21.80629 -20.96161 -19.91846 -19.04192 -17.49376 -16.81001 -16.54841 -15.82098 -15.67741 -15.12066 -14.82591 -14.68835 -14.21105 -14.07902 -13.93502 -13.91347 -13.89106 -13.54351 -13.48238 -13.12676 -12.80872 -12.69176 -12.32905 -12.15125 -12.05061 -11.78659 -11.62893 -11.56173 -11.44388 -11.37635 -11.20221 -11.07395 -10.89797 -10.85030 -10.66558 -10.34034 -10.07615 -9.80234 -9.62563 -9.39809 -9.06258 -8.93294 -8.78076 -8.70831 -6.85763 -5.74984 -3.07036 0.70279 1.15417 2.84040 3.28165 3.40650 3.44610 3.45998 3.73250 4.35539 4.41983 4.46884 4.57045 4.65405 4.74996 4.92115 4.97086 4.98630 5.07402 5.13989 5.15685 5.20939 5.27444 5.31410 5.42050 5.45341 5.52015 5.56331 5.59614 5.66097 5.68382 5.72203 5.81624 5.84623 5.85762 5.98276 6.02154 6.09782 6.13318 6.19458 6.31426 6.36798 6.39072 6.47429 6.61287 6.65164 6.69410 6.84214 7.24186 7.38214 7.57326 7.67349 7.99986 8.35042 9.06467 9.72681 10.62217 11.42282 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.020977 B = 0.002220 C = 0.002087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1334.448758 B =12609.735505 C =13416.243334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.091 4.091 3 C -0.059 4.059 4 C -0.123 4.123 5 C -0.087 4.087 6 C -0.131 4.131 7 C 0.555 3.445 8 O -0.541 6.541 9 N -0.713 5.713 10 C 0.150 3.850 11 H 0.088 0.912 12 C -0.158 4.158 13 C -0.147 4.147 14 C 0.176 3.824 15 N -0.612 5.612 16 C -0.223 4.223 17 H 0.078 0.922 18 C -0.009 4.009 19 N -0.922 5.922 20 Si 0.912 3.088 21 H -0.286 1.286 22 H -0.290 1.290 23 H -0.284 1.284 24 C 0.125 3.875 25 C -0.056 4.056 26 C -0.090 4.090 27 C -0.088 4.088 28 C -0.148 4.148 29 H 0.058 0.942 30 H 0.057 0.943 31 H 0.058 0.942 32 H 0.072 0.928 33 H 0.077 0.923 34 H 0.127 0.873 35 H 0.127 0.873 36 H 0.397 0.603 37 H 0.071 0.929 38 H 0.053 0.947 39 H 0.053 0.947 40 H 0.088 0.912 41 H 0.028 0.972 42 H 0.075 0.925 43 H 0.254 0.746 44 H 0.040 0.960 45 H 0.032 0.968 46 H 0.134 0.866 47 H 0.073 0.927 48 H 0.076 0.924 49 H 0.056 0.944 50 H 0.057 0.943 51 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.415 -26.833 9.613 28.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.128 4.128 3 C -0.059 4.059 4 C -0.141 4.141 5 C -0.106 4.106 6 C -0.134 4.134 7 C 0.342 3.658 8 O -0.420 6.420 9 N -0.363 5.363 10 C 0.046 3.954 11 H 0.106 0.894 12 C -0.216 4.216 13 C -0.167 4.167 14 C 0.050 3.950 15 N -0.338 5.338 16 C -0.351 4.351 17 H 0.096 0.904 18 C -0.205 4.205 19 N -0.569 5.569 20 Si 0.742 3.258 21 H -0.212 1.212 22 H -0.215 1.215 23 H -0.211 1.211 24 C -0.001 4.001 25 C -0.075 4.075 26 C -0.090 4.090 27 C -0.125 4.125 28 C -0.206 4.206 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.091 0.909 33 H 0.095 0.905 34 H 0.145 0.855 35 H 0.145 0.855 36 H 0.232 0.768 37 H 0.090 0.910 38 H 0.072 0.928 39 H 0.072 0.928 40 H 0.107 0.893 41 H 0.046 0.954 42 H 0.093 0.907 43 H 0.064 0.936 44 H 0.058 0.942 45 H 0.050 0.950 46 H 0.152 0.848 47 H 0.092 0.908 48 H 0.094 0.906 49 H 0.075 0.925 50 H 0.076 0.924 51 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -1.347 -26.051 10.151 27.991 hybrid contribution -0.501 0.621 -1.137 1.389 sum -1.848 -25.430 9.014 27.044 Atomic orbital electron populations 1.21768 0.94496 1.01813 1.02508 1.20655 0.96397 0.92607 1.03151 1.19927 0.97334 0.96070 0.92604 1.20953 1.00549 0.94968 0.97668 1.21314 0.97523 0.94585 0.97140 1.20011 1.04468 0.94508 0.94395 1.18265 0.77443 0.85935 0.84108 1.90758 1.54086 1.65783 1.31356 1.46069 1.66348 1.15433 1.08499 1.21138 0.94408 0.80656 0.99208 0.89381 1.22108 0.95547 1.02720 1.01220 1.23860 0.98448 0.99914 0.94518 1.22227 0.91939 0.87332 0.93470 1.45984 1.26381 1.16414 1.45071 1.18974 1.05700 0.96529 1.13876 0.90388 1.24781 0.97786 0.97638 1.00302 1.69795 1.19246 1.22698 1.45159 0.86202 0.78306 0.80370 0.80887 1.21218 1.21543 1.21107 1.22531 0.93180 0.88529 0.95830 1.21141 0.94993 0.93557 0.97841 1.19687 1.00489 0.93940 0.94902 1.20605 0.98766 0.99400 0.93743 1.21775 0.98002 0.99998 1.00782 0.92316 0.92356 0.92296 0.90932 0.90457 0.85534 0.85500 0.76800 0.91038 0.92799 0.92776 0.89344 0.95401 0.90681 0.93576 0.94202 0.95010 0.84785 0.90832 0.90550 0.92494 0.92363 0.92325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.86 9.72 37.15 0.36 -0.50 16 2 C -0.09 -0.56 5.37 -27.89 -0.15 -0.71 16 3 C -0.06 -0.50 5.14 -104.53 -0.54 -1.04 16 4 C -0.12 -1.07 9.66 -39.64 -0.38 -1.45 16 5 C -0.09 -0.86 9.54 -39.19 -0.37 -1.24 16 6 C -0.13 -1.61 5.87 -104.97 -0.62 -2.23 16 7 C 0.56 8.30 7.74 -12.33 -0.10 8.20 16 8 O -0.54 -9.96 16.01 5.32 0.09 -9.88 16 9 N -0.71 -9.77 4.90 -54.75 -0.27 -10.04 16 10 C 0.15 2.39 2.29 -67.93 -0.16 2.23 16 11 H 0.09 1.62 7.48 -51.93 -0.39 1.23 16 12 C -0.16 -2.28 9.44 37.16 0.35 -1.93 16 13 C -0.15 -2.67 3.35 -89.69 -0.30 -2.97 16 14 C 0.18 4.13 6.98 -2.83 -0.02 4.11 16 15 N -0.61 -15.91 3.70 -177.69 -0.66 -16.57 16 16 C -0.22 -6.35 10.70 -15.06 -0.16 -6.52 16 17 H 0.08 2.14 7.83 -52.48 -0.41 1.73 16 18 C -0.01 -0.25 5.50 -17.43 -0.10 -0.34 16 19 N -0.92 -27.55 11.39 55.49 0.63 -26.92 16 20 Si 0.91 22.36 29.55 -169.99 -5.02 17.33 16 21 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 22 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 23 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 24 C 0.13 2.58 8.37 -2.97 -0.02 2.55 16 25 C -0.06 -0.65 9.22 -39.19 -0.36 -1.01 16 26 C -0.09 -0.84 5.13 -104.68 -0.54 -1.38 16 27 C -0.09 -0.63 5.38 -27.88 -0.15 -0.78 16 28 C -0.15 -0.95 9.72 37.16 0.36 -0.59 16 29 H 0.06 0.36 6.79 -51.93 -0.35 0.00 16 30 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 31 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.07 0.39 8.05 -51.93 -0.42 -0.03 16 33 H 0.08 0.42 5.59 -51.93 -0.29 0.13 16 34 H 0.13 0.83 8.06 -52.48 -0.42 0.41 16 35 H 0.13 1.03 6.41 -52.49 -0.34 0.70 16 36 H 0.40 4.47 6.64 -40.82 -0.27 4.20 16 37 H 0.07 1.05 8.09 -51.93 -0.42 0.63 16 38 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 40 H 0.09 1.54 8.14 -51.94 -0.42 1.11 16 41 H 0.03 0.68 8.03 -51.93 -0.42 0.26 16 42 H 0.07 1.93 7.16 -51.93 -0.37 1.55 16 43 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 44 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 45 H 0.03 0.67 8.10 -51.93 -0.42 0.25 16 46 H 0.13 1.61 7.65 -52.48 -0.40 1.21 16 47 H 0.07 0.52 8.05 -51.93 -0.42 0.11 16 48 H 0.08 0.47 5.60 -51.93 -0.29 0.18 16 49 H 0.06 0.34 6.79 -51.93 -0.35 -0.01 16 50 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 51 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 LS Contribution 405.75 15.07 6.11 6.11 Total: -1.00 -33.36 405.75 -10.51 -43.87 By element: Atomic # 1 Polarization: 10.18 SS G_CDS: -8.50 Total: 1.68 kcal Atomic # 6 Polarization: -2.70 SS G_CDS: -2.89 Total: -5.59 kcal Atomic # 7 Polarization: -53.23 SS G_CDS: -0.29 Total: -53.53 kcal Atomic # 8 Polarization: -9.96 SS G_CDS: 0.09 Total: -9.88 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.02 Total: 17.33 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -33.36 -10.51 -43.87 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970993870.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.856 kcal (2) G-P(sol) polarization free energy of solvation -33.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.868 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds