Wall clock time and date at job start Tue Mar 31 2020 16:23:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50698 * 109.46974 * 2 1 4 4 C 1.38387 * 119.85712 * 265.30024 * 3 2 1 5 5 C 1.37932 * 120.14770 * 180.25901 * 4 3 2 6 6 C 1.39601 * 119.85115 * 359.44275 * 5 4 3 7 7 C 1.47844 * 120.14047 * 180.30248 * 6 5 4 8 8 O 1.21551 * 119.99751 * 179.97438 * 7 6 5 9 9 N 1.34778 * 120.00368 * 359.97438 * 7 6 5 10 10 C 1.46503 * 119.99775 * 180.02562 * 9 7 6 11 11 H 1.08994 * 109.47300 * 324.99602 * 10 9 7 12 12 C 1.52998 * 109.47122 * 84.99986 * 10 9 7 13 13 C 1.53005 * 109.46455 * 204.99638 * 10 9 7 14 14 C 1.53953 * 113.73792 * 161.82103 * 13 10 9 15 15 N 1.47813 * 86.03398 * 222.08687 * 14 13 10 16 16 C 1.36939 * 134.44995 * 204.64427 * 15 14 13 17 17 H 1.08005 * 119.99333 * 179.86765 * 16 15 14 18 18 C 1.38810 * 120.00231 * 359.86620 * 16 15 14 19 19 N 1.31614 * 120.00211 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 119.99870 * 179.97438 * 18 16 15 21 21 H 1.48508 * 109.47109 * 60.00244 * 20 18 16 22 22 H 1.48500 * 109.47310 * 179.97438 * 20 18 16 23 23 H 1.48495 * 109.47580 * 300.00392 * 20 18 16 24 24 C 1.47574 * 91.05200 * 24.55045 * 15 14 13 25 25 C 1.39550 * 119.71001 * 0.27964 * 6 5 4 26 26 C 1.37975 * 119.85539 * 359.97438 * 25 6 5 27 27 C 1.50708 * 119.92858 * 180.02562 * 26 25 6 28 28 C 1.53005 * 109.46560 * 265.00005 * 27 26 25 29 29 H 1.08998 * 109.47224 * 299.99380 * 1 2 3 30 30 H 1.08994 * 109.47449 * 60.00245 * 1 2 3 31 31 H 1.09006 * 109.46755 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.47624 * 240.00361 * 2 1 3 33 33 H 1.09000 * 109.47824 * 119.99970 * 2 1 3 34 34 H 1.08004 * 119.92560 * 359.97438 * 4 3 2 35 35 H 1.08002 * 120.07538 * 179.72033 * 5 4 3 36 36 H 0.96999 * 119.99897 * 359.97438 * 9 7 6 37 37 H 1.09006 * 109.46904 * 180.02562 * 12 10 9 38 38 H 1.09001 * 109.47078 * 300.06913 * 12 10 9 39 39 H 1.08994 * 109.47351 * 60.06999 * 12 10 9 40 40 H 1.08989 * 112.94638 * 293.41185 * 13 10 9 41 41 H 1.09001 * 113.76749 * 336.35191 * 14 13 10 42 42 H 1.08995 * 113.76722 * 107.74522 * 14 13 10 43 43 H 0.96998 * 120.00028 * 180.02562 * 19 18 16 44 44 H 1.09005 * 113.76916 * 221.15200 * 24 15 14 45 45 H 1.09005 * 113.87176 * 89.76938 * 24 15 14 46 46 H 1.08006 * 120.07429 * 179.97438 * 25 6 5 47 47 H 1.08998 * 109.47044 * 24.99684 * 27 26 25 48 48 H 1.08997 * 109.46986 * 145.00186 * 27 26 25 49 49 H 1.08998 * 109.47180 * 299.99595 * 28 27 26 50 50 H 1.08997 * 109.47324 * 60.00387 * 28 27 26 51 51 H 1.09002 * 109.46593 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 6 2.3546 2.0376 -1.1962 5 6 2.8199 3.3360 -1.2027 6 6 2.9544 4.0320 0.0000 7 6 3.4462 5.4263 -0.0002 8 8 3.5619 6.0300 1.0484 9 7 3.7663 6.0279 -1.1630 10 6 4.2542 7.4093 -1.1630 11 1 3.7525 7.9718 -0.3757 12 6 5.7636 7.4171 -0.9128 13 6 3.9586 8.0544 -2.5185 14 6 4.0137 9.5928 -2.4979 15 7 2.7999 9.5453 -3.3401 16 6 2.2261 10.3986 -4.2445 17 1 1.3095 10.1201 -4.7432 18 6 2.8226 11.6213 -4.5201 19 7 3.9398 11.9604 -3.9126 20 14 2.0403 12.7850 -5.7543 21 1 0.6747 13.1470 -5.2965 22 1 2.8657 14.0141 -5.8679 23 1 1.9579 12.1192 -7.0791 24 6 2.4563 8.2088 -2.8170 25 6 2.6221 3.4061 1.2022 26 6 2.1628 2.1051 1.1952 27 6 1.8029 1.4278 2.4925 28 6 2.9999 0.6171 2.9936 29 1 -0.3633 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 2.2459 1.4995 -2.1263 35 1 3.0754 3.8147 -2.1365 36 1 3.6744 5.5460 -1.9998 37 1 6.1265 8.4449 -0.9123 38 1 5.9743 6.9562 0.0523 39 1 6.2654 6.8556 -1.7007 40 1 4.5245 7.6060 -3.3349 41 1 3.8471 10.0252 -1.5112 42 1 4.8851 10.0080 -3.0040 43 1 4.3564 12.8150 -4.1050 44 1 2.0866 7.5210 -3.5776 45 1 1.8310 8.2318 -1.9244 46 1 2.7243 3.9390 2.1361 47 1 1.5380 2.1811 3.2344 48 1 0.9549 0.7621 2.3317 49 1 3.2647 -0.1362 2.2517 50 1 3.8479 1.2828 3.1543 51 1 2.7397 0.1276 3.9321 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000970993870.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:23:17 Heat of formation + Delta-G solvation = 0.473035 kcal Electronic energy + Delta-G solvation = -27897.588533 eV Core-core repulsion = 24182.870368 eV Total energy + Delta-G solvation = -3714.718165 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.49467 -40.39358 -39.44756 -36.25231 -35.66423 -34.31943 -34.14035 -32.08534 -30.81602 -29.88674 -29.30306 -26.66163 -25.94727 -25.51765 -24.66257 -23.15282 -22.47944 -22.24329 -21.16847 -20.41106 -18.83781 -18.46441 -17.60919 -16.90897 -16.63422 -16.51897 -16.13905 -15.83066 -15.81167 -15.23743 -14.84382 -14.82073 -14.71395 -14.57672 -14.38791 -14.12726 -14.06205 -13.50249 -13.39959 -13.28382 -13.19007 -13.10211 -12.95963 -12.75606 -12.67093 -12.50764 -12.40037 -12.11274 -12.06077 -12.01840 -11.81558 -11.67262 -11.60791 -11.44369 -11.24286 -10.90069 -10.86754 -10.14566 -9.79858 -9.54471 -8.93737 -7.91264 -5.25181 -0.13159 0.41184 1.44564 1.48355 1.54497 1.85023 2.11760 2.46788 2.85939 3.28392 3.37271 3.58705 3.73320 3.79015 3.89086 3.94509 3.98888 4.14643 4.23557 4.24943 4.41645 4.44375 4.48785 4.55118 4.55757 4.56063 4.61827 4.74835 4.78693 4.82060 4.84601 4.87849 4.94156 5.02980 5.06626 5.07940 5.11321 5.12803 5.23315 5.24812 5.28110 5.35147 5.35991 5.47659 5.50842 5.51577 5.53174 5.63080 5.68757 5.92741 5.98224 6.56551 6.90819 7.21907 7.59619 8.55369 9.25609 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.020977 B = 0.002220 C = 0.002087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1334.448758 B =12609.735505 C =13416.243334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.089 4.089 3 C -0.055 4.055 4 C -0.124 4.124 5 C -0.086 4.086 6 C -0.153 4.153 7 C 0.555 3.445 8 O -0.586 6.586 9 N -0.702 5.702 10 C 0.162 3.838 11 H 0.059 0.941 12 C -0.151 4.151 13 C -0.109 4.109 14 C 0.171 3.829 15 N -0.643 5.643 16 C -0.238 4.238 17 H 0.083 0.917 18 C -0.069 4.069 19 N -0.954 5.954 20 Si 0.981 3.019 21 H -0.280 1.280 22 H -0.294 1.294 23 H -0.272 1.272 24 C 0.127 3.873 25 C -0.074 4.074 26 C -0.093 4.093 27 C -0.088 4.088 28 C -0.146 4.146 29 H 0.052 0.948 30 H 0.052 0.948 31 H 0.073 0.927 32 H 0.087 0.913 33 H 0.086 0.914 34 H 0.155 0.845 35 H 0.146 0.854 36 H 0.412 0.588 37 H 0.065 0.935 38 H 0.050 0.950 39 H 0.075 0.925 40 H 0.108 0.892 41 H 0.010 0.990 42 H 0.048 0.952 43 H 0.249 0.751 44 H 0.063 0.937 45 H 0.029 0.971 46 H 0.117 0.883 47 H 0.068 0.932 48 H 0.092 0.908 49 H 0.063 0.937 50 H 0.043 0.957 51 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.247 -30.055 8.194 31.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.126 4.126 3 C -0.055 4.055 4 C -0.141 4.141 5 C -0.104 4.104 6 C -0.156 4.156 7 C 0.344 3.656 8 O -0.467 6.467 9 N -0.353 5.353 10 C 0.056 3.944 11 H 0.078 0.922 12 C -0.209 4.209 13 C -0.128 4.128 14 C 0.045 3.955 15 N -0.370 5.370 16 C -0.366 4.366 17 H 0.101 0.899 18 C -0.262 4.262 19 N -0.602 5.602 20 Si 0.808 3.192 21 H -0.206 1.206 22 H -0.220 1.220 23 H -0.198 1.198 24 C 0.002 3.998 25 C -0.093 4.093 26 C -0.093 4.093 27 C -0.125 4.125 28 C -0.203 4.203 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.092 0.908 32 H 0.106 0.894 33 H 0.104 0.896 34 H 0.172 0.828 35 H 0.163 0.837 36 H 0.250 0.750 37 H 0.084 0.916 38 H 0.069 0.931 39 H 0.094 0.906 40 H 0.126 0.874 41 H 0.028 0.972 42 H 0.067 0.933 43 H 0.058 0.942 44 H 0.081 0.919 45 H 0.047 0.953 46 H 0.135 0.865 47 H 0.086 0.914 48 H 0.110 0.890 49 H 0.082 0.918 50 H 0.062 0.938 51 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -2.196 -29.328 8.714 30.674 hybrid contribution -0.301 1.527 -0.643 1.684 sum -2.497 -27.801 8.071 29.056 Atomic orbital electron populations 1.21766 0.94112 1.02664 1.01996 1.20729 0.96565 0.90957 1.04396 1.20301 0.95850 0.97210 0.92121 1.21314 0.99433 0.94487 0.98891 1.21522 0.97024 0.95118 0.96755 1.19858 1.06715 0.93239 0.95799 1.18714 0.76560 0.86888 0.83472 1.90731 1.56048 1.67064 1.32897 1.45841 1.65942 1.14347 1.09146 1.20787 0.95309 0.81551 0.96736 0.92234 1.22040 0.94319 1.02739 1.01841 1.23461 0.96966 0.96211 0.96193 1.22129 0.90418 0.91085 0.91846 1.46419 1.27401 1.17996 1.45173 1.19401 1.05813 0.97182 1.14223 0.89887 1.25663 0.98515 0.99410 1.02567 1.69992 1.20648 1.22795 1.46812 0.85128 0.77271 0.77875 0.78903 1.20629 1.21994 1.19804 1.22666 0.94686 0.86478 0.95952 1.21154 0.96315 0.94720 0.97150 1.19903 0.99882 0.93110 0.96413 1.20658 0.99642 0.99511 0.92677 1.21758 0.97070 0.99754 1.01702 0.92877 0.92868 0.90797 0.89424 0.89559 0.82770 0.83654 0.74992 0.91641 0.93125 0.90591 0.87384 0.97225 0.93321 0.94187 0.91862 0.95333 0.86536 0.91374 0.89005 0.91761 0.93757 0.90920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 9.72 71.98 0.70 -0.56 16 2 C -0.09 -0.79 5.37 29.85 0.16 -0.63 16 3 C -0.05 -0.79 5.14 -19.81 -0.10 -0.89 16 4 C -0.12 -1.76 9.66 22.23 0.21 -1.55 16 5 C -0.09 -1.52 9.54 22.53 0.21 -1.30 16 6 C -0.15 -3.71 5.87 -20.09 -0.12 -3.83 16 7 C 0.55 16.73 7.74 86.79 0.67 17.40 16 8 O -0.59 -22.56 16.01 -3.88 -0.06 -22.62 16 9 N -0.70 -18.59 4.90 -445.40 -2.18 -20.77 16 10 C 0.16 5.12 2.29 44.99 0.10 5.22 16 11 H 0.06 2.27 7.48 -2.39 -0.02 2.25 16 12 C -0.15 -4.31 9.44 71.98 0.68 -3.63 16 13 C -0.11 -3.87 3.35 -10.13 -0.03 -3.90 16 14 C 0.17 8.25 6.98 86.44 0.60 8.85 16 15 N -0.64 -33.70 3.70 -716.10 -2.65 -36.36 16 16 C -0.24 -13.61 10.70 84.03 0.90 -12.71 16 17 H 0.08 4.52 7.83 -2.91 -0.02 4.49 16 18 C -0.07 -3.98 5.50 84.86 0.47 -3.51 16 19 N -0.95 -58.44 11.39 21.65 0.25 -58.19 16 20 Si 0.98 46.28 29.55 68.60 2.03 48.31 16 21 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 22 H -0.29 -13.94 7.11 99.48 0.71 -13.23 16 23 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 24 C 0.13 5.12 8.37 86.49 0.72 5.84 16 25 C -0.07 -1.75 9.22 22.52 0.21 -1.54 16 26 C -0.09 -1.64 5.13 -19.90 -0.10 -1.74 16 27 C -0.09 -1.16 5.38 29.85 0.16 -0.99 16 28 C -0.15 -1.64 9.72 71.98 0.70 -0.95 16 29 H 0.05 0.51 6.79 -2.39 -0.02 0.50 16 30 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 31 H 0.07 0.43 8.14 -2.38 -0.02 0.41 16 32 H 0.09 0.56 8.05 -2.39 -0.02 0.54 16 33 H 0.09 0.64 5.59 -2.39 -0.01 0.63 16 34 H 0.15 1.35 8.06 -2.91 -0.02 1.33 16 35 H 0.15 1.92 6.41 -2.91 -0.02 1.90 16 36 H 0.41 8.33 6.64 -92.71 -0.62 7.72 16 37 H 0.06 1.94 8.09 -2.38 -0.02 1.92 16 38 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 39 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 40 H 0.11 3.50 8.14 -2.39 -0.02 3.48 16 41 H 0.01 0.51 8.03 -2.39 -0.02 0.49 16 42 H 0.05 2.59 7.16 -2.39 -0.02 2.57 16 43 H 0.25 14.84 8.31 -92.71 -0.77 14.06 16 44 H 0.06 2.27 8.14 -2.38 -0.02 2.25 16 45 H 0.03 1.19 8.10 -2.38 -0.02 1.18 16 46 H 0.12 3.05 7.65 -2.91 -0.02 3.03 16 47 H 0.07 0.96 8.05 -2.39 -0.02 0.94 16 48 H 0.09 0.92 5.60 -2.39 -0.01 0.91 16 49 H 0.06 0.63 6.79 -2.39 -0.02 0.61 16 50 H 0.04 0.62 8.14 -2.39 -0.02 0.60 16 51 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 Total: -1.00 -74.57 405.75 3.83 -70.74 By element: Atomic # 1 Polarization: 19.02 SS G_CDS: 0.30 Total: 19.32 kcal Atomic # 6 Polarization: -6.57 SS G_CDS: 6.15 Total: -0.42 kcal Atomic # 7 Polarization: -110.74 SS G_CDS: -4.59 Total: -115.33 kcal Atomic # 8 Polarization: -22.56 SS G_CDS: -0.06 Total: -22.62 kcal Atomic # 14 Polarization: 46.28 SS G_CDS: 2.03 Total: 48.31 kcal Total: -74.57 3.83 -70.74 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970993870.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.213 kcal (2) G-P(sol) polarization free energy of solvation -74.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.740 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds