Wall clock time and date at job start Tue Mar 31 2020 16:41:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50701 * 109.47133 * 2 1 4 4 C 1.38235 * 119.99794 * 90.00695 * 3 2 1 5 5 C 1.38232 * 120.00073 * 180.02562 * 4 3 2 6 6 C 1.38239 * 119.99810 * 359.94491 * 5 4 3 7 7 C 1.50704 * 119.99763 * 180.02562 * 6 5 4 8 8 H 1.08997 * 109.47288 * 0.02562 * 7 6 5 9 9 C 1.53002 * 109.46934 * 120.00124 * 7 6 5 10 10 C 1.50697 * 109.47022 * 239.99898 * 7 6 5 11 11 O 1.21284 * 120.00482 * 0.02562 * 10 7 6 12 12 N 1.34784 * 119.99678 * 179.97438 * 10 7 6 13 13 C 1.47422 * 125.65001 * 0.05092 * 12 10 7 14 14 C 1.54911 * 104.83193 * 204.08992 * 13 12 10 15 15 C 1.55163 * 101.57731 * 322.98767 * 14 13 12 16 16 H 1.08998 * 110.87409 * 277.06328 * 15 14 13 17 17 N 1.46499 * 110.71543 * 153.86800 * 15 14 13 18 18 C 1.46499 * 120.00107 * 306.47225 * 17 15 14 19 19 C 1.36939 * 120.00349 * 126.47667 * 17 15 14 20 20 H 1.07996 * 119.99449 * 343.26691 * 19 17 15 21 21 C 1.38806 * 120.00356 * 163.53856 * 19 17 15 22 22 N 1.31619 * 120.00193 * 343.89426 * 21 19 17 23 23 Si 1.86800 * 120.00013 * 163.89130 * 21 19 17 24 24 H 1.48499 * 109.47267 * 359.97438 * 23 21 19 25 25 H 1.48508 * 109.47059 * 120.00269 * 23 21 19 26 26 H 1.48501 * 109.47213 * 239.99996 * 23 21 19 27 27 C 1.47021 * 125.64347 * 180.02562 * 12 10 7 28 28 C 1.38231 * 120.00201 * 0.28084 * 6 5 4 29 29 C 1.38235 * 120.00208 * 269.97207 * 3 2 1 30 30 H 1.09007 * 109.46934 * 59.99622 * 1 2 3 31 31 H 1.08997 * 109.47114 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47119 * 299.99905 * 1 2 3 33 33 H 1.09002 * 109.47119 * 240.00095 * 2 1 3 34 34 H 1.08999 * 109.47426 * 119.99998 * 2 1 3 35 35 H 1.08002 * 120.00349 * 359.96423 * 4 3 2 36 36 H 1.08000 * 120.00280 * 179.97438 * 5 4 3 37 37 H 1.08999 * 109.47266 * 300.00370 * 9 7 6 38 38 H 1.09007 * 109.46826 * 60.00071 * 9 7 6 39 39 H 1.09002 * 109.47300 * 179.97438 * 9 7 6 40 40 H 1.09006 * 110.36396 * 322.92192 * 13 12 10 41 41 H 1.09000 * 110.37060 * 85.13844 * 13 12 10 42 42 H 1.09001 * 111.00320 * 204.91459 * 14 13 12 43 43 H 1.09002 * 111.00581 * 81.05932 * 14 13 12 44 44 H 1.09005 * 109.47634 * 264.70555 * 18 17 15 45 45 H 1.09004 * 109.47355 * 24.70578 * 18 17 15 46 46 H 1.09004 * 109.47121 * 144.70121 * 18 17 15 47 47 H 0.96996 * 120.00572 * 180.02562 * 22 21 19 48 48 H 1.08996 * 109.88761 * 59.56662 * 27 12 10 49 49 H 1.08999 * 110.01490 * 298.46298 * 27 12 10 50 50 H 1.08003 * 120.00265 * 179.72719 * 28 6 5 51 51 H 1.07994 * 119.99863 * 0.02562 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2628 2.0724 1.1972 5 6 2.7231 3.3758 1.1972 6 6 2.9539 4.0273 0.0001 7 6 3.4563 5.4482 0.0002 8 1 3.5774 5.7907 1.0278 9 6 4.8044 5.5125 -0.7206 10 6 2.4639 6.3319 -0.7107 11 8 1.4485 5.8550 -1.1716 12 7 2.7044 7.6524 -0.8334 13 6 3.8924 8.3605 -0.3230 14 6 3.4339 9.8299 -0.1489 15 6 2.4945 10.0098 -1.3706 16 1 3.0658 10.2472 -2.2681 17 7 1.4935 11.0463 -1.1064 18 6 0.6558 10.9670 0.0928 19 6 1.3408 12.0894 -1.9805 20 1 2.1128 12.3047 -2.7044 21 6 0.1964 12.8735 -1.9322 22 7 -0.8678 12.4457 -1.2866 23 14 0.1667 14.5359 -2.7836 24 1 1.4790 14.7829 -3.4333 25 1 -0.9050 14.5465 -3.8116 26 1 -0.0975 15.6002 -1.7823 27 6 1.8255 8.6251 -1.4989 28 6 2.7190 3.3774 -1.1971 29 6 2.2632 2.0723 -1.1971 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 2.0824 1.5634 2.1325 36 1 2.9028 3.8850 2.1325 37 1 5.5221 4.8733 -0.2065 38 1 4.6835 5.1699 -1.7484 39 1 5.1675 6.5403 -0.7210 40 1 4.2000 7.9430 0.6358 41 1 4.7091 8.2988 -1.0423 42 1 4.2817 10.5128 -0.2039 43 1 2.8887 9.9609 0.7858 44 1 -0.2914 10.4887 -0.1566 45 1 1.1685 10.3816 0.8561 46 1 0.4670 11.9716 0.4712 47 1 -1.6676 12.9933 -1.2532 48 1 0.8505 8.6378 -1.0118 49 1 1.7107 8.3652 -2.5512 50 1 2.8951 3.8879 -2.1324 51 1 2.0833 1.5632 -2.1324 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972555975.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:41:50 Heat of formation + Delta-G solvation = 9.708085 kcal Electronic energy + Delta-G solvation = -28402.045833 eV Core-core repulsion = 24687.728130 eV Total energy + Delta-G solvation = -3714.317703 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.40057 -39.17771 -37.43423 -35.13733 -34.84053 -32.84994 -31.48081 -30.95243 -29.71250 -28.81767 -27.67671 -26.07321 -25.21016 -23.93144 -22.83166 -22.61350 -22.12519 -20.69876 -19.27925 -18.93318 -17.12237 -16.85008 -16.37134 -15.74015 -15.68644 -15.42598 -14.83401 -14.67783 -14.24513 -13.83674 -13.80933 -13.59191 -13.41911 -13.37101 -13.20905 -12.95978 -12.77716 -12.58292 -12.24291 -12.11620 -12.02629 -11.83734 -11.71158 -11.62115 -11.33547 -11.28200 -10.94638 -10.87092 -10.85616 -10.78204 -10.57021 -10.43901 -10.27127 -9.89347 -9.81203 -9.48997 -8.88532 -8.57580 -8.55241 -8.27500 -6.89990 -5.77372 -3.19351 1.27817 1.42483 2.87717 3.23012 3.36117 3.43371 3.45373 3.76420 4.44973 4.45917 4.58562 4.66653 4.74304 4.92605 4.95148 4.99258 5.09472 5.14395 5.16367 5.23992 5.29501 5.35452 5.42320 5.46241 5.47490 5.55167 5.61734 5.66927 5.67661 5.76254 5.79495 5.86125 5.94487 5.97923 5.98989 6.03915 6.07256 6.32257 6.35460 6.38645 6.53458 6.56970 6.60476 6.68167 6.81750 6.85326 6.98502 7.37285 7.68375 7.78715 7.84396 8.30490 8.44338 9.17021 9.80625 10.26940 11.27716 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.022032 B = 0.002346 C = 0.002229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1270.584461 B =11930.457177 C =12561.369534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.083 4.083 3 C -0.086 4.086 4 C -0.122 4.122 5 C -0.109 4.109 6 C -0.067 4.067 7 C -0.068 4.068 8 H 0.100 0.900 9 C -0.147 4.147 10 C 0.527 3.473 11 O -0.536 6.536 12 N -0.612 5.612 13 C 0.100 3.900 14 C -0.155 4.155 15 C 0.173 3.827 16 H 0.078 0.922 17 N -0.588 5.588 18 C 0.161 3.839 19 C -0.258 4.258 20 H 0.073 0.927 21 C 0.000 4.000 22 N -0.905 5.905 23 Si 0.906 3.094 24 H -0.278 1.278 25 H -0.291 1.291 26 H -0.289 1.289 27 C 0.086 3.914 28 C -0.079 4.079 29 C -0.120 4.120 30 H 0.057 0.943 31 H 0.055 0.945 32 H 0.056 0.944 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.119 0.881 36 H 0.120 0.880 37 H 0.067 0.933 38 H 0.061 0.939 39 H 0.072 0.928 40 H 0.068 0.932 41 H 0.068 0.932 42 H 0.078 0.922 43 H 0.078 0.922 44 H 0.028 0.972 45 H 0.001 0.999 46 H 0.050 0.950 47 H 0.253 0.747 48 H 0.071 0.929 49 H 0.058 0.942 50 H 0.118 0.882 51 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.942 -20.459 5.319 24.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.120 4.120 3 C -0.086 4.086 4 C -0.140 4.140 5 C -0.127 4.127 6 C -0.068 4.068 7 C -0.089 4.089 8 H 0.118 0.882 9 C -0.204 4.204 10 C 0.314 3.686 11 O -0.413 6.413 12 N -0.346 5.346 13 C -0.023 4.023 14 C -0.195 4.195 15 C 0.063 3.937 16 H 0.096 0.904 17 N -0.308 5.308 18 C 0.017 3.983 19 C -0.387 4.387 20 H 0.091 0.909 21 C -0.198 4.198 22 N -0.550 5.550 23 Si 0.736 3.264 24 H -0.203 1.203 25 H -0.218 1.218 26 H -0.216 1.216 27 C -0.038 4.038 28 C -0.097 4.097 29 C -0.138 4.138 30 H 0.076 0.924 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.088 0.912 34 H 0.087 0.913 35 H 0.137 0.863 36 H 0.138 0.862 37 H 0.086 0.914 38 H 0.080 0.920 39 H 0.091 0.909 40 H 0.087 0.913 41 H 0.086 0.914 42 H 0.096 0.904 43 H 0.097 0.903 44 H 0.046 0.954 45 H 0.020 0.980 46 H 0.068 0.932 47 H 0.063 0.937 48 H 0.090 0.910 49 H 0.077 0.923 50 H 0.136 0.864 51 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 11.176 -20.657 5.093 24.032 hybrid contribution -0.277 0.991 -0.402 1.105 sum 10.899 -19.666 4.690 22.968 Atomic orbital electron populations 1.21755 0.94742 1.01488 1.02516 1.20522 0.96219 0.92780 1.02519 1.19859 0.99226 0.96209 0.93273 1.20892 1.00847 0.94890 0.97367 1.20967 0.99698 0.94927 0.97156 1.19308 1.00009 0.93856 0.93597 1.20233 0.95381 0.91941 1.01330 0.88156 1.21932 0.94450 1.03279 1.00747 1.20091 0.87063 0.81074 0.80352 1.90720 1.28039 1.73435 1.49067 1.48531 1.22844 1.06552 1.56641 1.22415 0.88142 0.93389 0.98346 1.23370 1.00675 0.93447 1.01964 1.21326 0.90352 0.86587 0.95463 0.90382 1.44001 1.40237 1.23121 1.23446 1.20834 0.92440 0.99483 0.85577 1.19295 1.01271 1.04545 1.13630 0.90888 1.24937 0.94988 0.99831 1.00030 1.70133 1.02136 1.36458 1.46283 0.86163 0.77460 0.84082 0.78682 1.20308 1.21765 1.21596 1.22920 0.94958 0.89211 0.96720 1.20884 0.97246 0.93936 0.97624 1.20956 1.00534 0.94915 0.97408 0.92418 0.92553 0.92510 0.91221 0.91257 0.86343 0.86240 0.91447 0.91988 0.90918 0.91325 0.91418 0.90360 0.90350 0.95396 0.98031 0.93170 0.93686 0.91044 0.92327 0.86367 0.86358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 9.89 37.16 0.37 -0.84 16 2 C -0.08 -0.68 6.06 -27.89 -0.17 -0.85 16 3 C -0.09 -0.92 5.13 -104.62 -0.54 -1.45 16 4 C -0.12 -1.30 9.70 -39.58 -0.38 -1.68 16 5 C -0.11 -1.25 9.67 -39.58 -0.38 -1.63 16 6 C -0.07 -0.85 4.40 -104.62 -0.46 -1.31 16 7 C -0.07 -0.81 2.25 -92.92 -0.21 -1.02 16 8 H 0.10 1.04 7.58 -51.93 -0.39 0.64 16 9 C -0.15 -1.39 8.82 37.16 0.33 -1.06 16 10 C 0.53 8.59 7.08 -10.98 -0.08 8.51 16 11 O -0.54 -10.94 15.42 5.55 0.09 -10.85 16 12 N -0.61 -9.79 3.32 -170.52 -0.57 -10.36 16 13 C 0.10 1.25 5.14 -2.53 -0.01 1.24 16 14 C -0.15 -2.35 6.59 -24.58 -0.16 -2.51 16 15 C 0.17 3.35 3.45 -66.09 -0.23 3.12 16 16 H 0.08 1.48 7.89 -51.93 -0.41 1.07 16 17 N -0.59 -14.23 2.94 -171.38 -0.50 -14.73 16 18 C 0.16 3.91 7.80 59.85 0.47 4.38 16 19 C -0.26 -6.89 9.68 -15.06 -0.15 -7.04 16 20 H 0.07 1.88 7.80 -52.49 -0.41 1.48 16 21 C 0.00 0.01 5.06 -17.43 -0.09 -0.08 16 22 N -0.91 -26.24 10.51 55.49 0.58 -25.66 16 23 Si 0.91 21.56 29.58 -169.99 -5.03 16.53 16 24 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 25 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 26 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 27 C 0.09 1.68 6.51 -3.07 -0.02 1.66 16 28 C -0.08 -1.03 7.92 -39.58 -0.31 -1.34 16 29 C -0.12 -1.40 9.70 -39.58 -0.38 -1.79 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 33 H 0.07 0.51 8.09 -51.93 -0.42 0.09 16 34 H 0.07 0.48 8.09 -51.93 -0.42 0.06 16 35 H 0.12 1.01 8.06 -52.49 -0.42 0.58 16 36 H 0.12 1.13 7.95 -52.49 -0.42 0.71 16 37 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.06 0.62 7.40 -51.93 -0.38 0.24 16 39 H 0.07 0.62 4.99 -51.93 -0.26 0.36 16 40 H 0.07 0.70 7.36 -51.93 -0.38 0.32 16 41 H 0.07 0.72 7.07 -51.93 -0.37 0.35 16 42 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 43 H 0.08 1.28 6.06 -51.93 -0.31 0.97 16 44 H 0.03 0.75 7.43 -51.93 -0.39 0.36 16 45 H 0.00 0.03 6.03 -51.93 -0.31 -0.29 16 46 H 0.05 1.32 6.98 -51.93 -0.36 0.95 16 47 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 48 H 0.07 1.62 7.13 -51.93 -0.37 1.25 16 49 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 50 H 0.12 1.57 7.52 -52.48 -0.39 1.18 16 51 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 LS Contribution 396.60 15.07 5.98 5.98 Total: -1.00 -32.05 396.60 -10.39 -42.44 By element: Atomic # 1 Polarization: 8.86 SS G_CDS: -8.52 Total: 0.34 kcal Atomic # 6 Polarization: -1.27 SS G_CDS: -2.41 Total: -3.68 kcal Atomic # 7 Polarization: -50.26 SS G_CDS: -0.49 Total: -50.75 kcal Atomic # 8 Polarization: -10.94 SS G_CDS: 0.09 Total: -10.85 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.03 Total: 16.53 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -32.05 -10.39 -42.44 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972555975.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.149 kcal (2) G-P(sol) polarization free energy of solvation -32.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.441 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds